lerfob.predictor.mathilde.climate

Class MathildeClimatePredictor

java.lang.Object

repicea.simulation.SensitivityAnalysisParameter<ModelParameterEstimates>

repicea.simulation.REpiceaPredictor

lerfob.predictor.mathilde.climate.MathildeClimatePredictor

All Implemented Interfaces:

java.io.Serializable, REpiceaClimateChangeGenerator<MathildeClimatePlot>, REpiceaClimateGenerator<MathildeClimatePlot>

public class MathildeClimatePredictor
extends REpiceaPredictor
implements REpiceaClimateChangeGenerator<MathildeClimatePlot>

The MathildeClimatePredictor class is a model based on the SAFRAN grid values in the LERFoB network of permanent plots. The model has plot random effects that are spatially correlated. If the plot coordinates are not available, then the GeographicalCoordinatesGenerator class provides the mean coordinates for the department. The instance that implements the MathildeClimatePlot interface provides the date. The class is meant to work with dates from 1900 and later. If the date is earlier than 1900, then the class assumes that the climate is similar to that of 1900.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class repicea.simulation.REpiceaPredictor

REpiceaPredictor.CruiseLine, REpiceaPredictor.ErrorTermGroup, REpiceaPredictor.IntervalNestedInPlotDefinition

Nested classes/interfaces inherited from interface repicea.simulation.climate.REpiceaClimateGenerator

REpiceaClimateGenerator.RepresentativeConcentrationPathway

Field Summary

Fields inherited from class repicea.simulation.REpiceaPredictor

DefaultZeroIndex, isRandomEffectsVariabilityEnabled, isResidualVariabilityEnabled, listeners, oXVector

Fields inherited from class repicea.simulation.SensitivityAnalysisParameter

isParametersVariabilityEnabled

Constructor Summary

Constructors

Modifier	Constructor and Description
	MathildeClimatePredictor(boolean isVariabilityEnabled)
protected	MathildeClimatePredictor(boolean isParameterVariabilityEnabled, boolean isRandomEffectVariabilityEnabled, boolean isResidualVariabilityEnabled)

Method Summary

Modifier and Type	Method and Description
protected Estimate<? extends StandardGaussianDistribution>	getBlupsForThisSubject(MonteCarloSimulationCompliantObject subject) This method returns the blups for the subject or nothing if there is no blups for this subject
REpiceaClimateChangeTrend	getClimateTrendForThisStand(MonteCarloSimulationCompliantObject plot) Returns Map of the annual changes for the different climate variable for a MonteCarloSimulationCompliantObject instance, typically a plot.
REpiceaClimateVariableMap	getClimateVariables(MathildeClimatePlot plot) Returns a map of climate variables depending on the geographical coordinates of the plot.
protected double	getFixedEffectPrediction(MathildeClimatePlot plot, Matrix currentBeta, Matrix rcpModifiedBeta)
protected Matrix	getRandomEffects(MonteCarloSimulationCompliantObject subject)
protected static java.util.List<MathildeClimatePlot>	getReferenceStands() This method returns a copy of static member referenceStands.
protected void	init() This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.
void	setRepresentativeConcentrationPathway(REpiceaClimateGenerator.RepresentativeConcentrationPathway rcp) Sets the Representative Concentration Pathway rcp for the climate generator.
protected Matrix	simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject subject, Estimate<?> randomEffectsEstimate) This method simulates random deviates from an estimate and stores them in the simulatedRandomEffects member.

Methods inherited from class repicea.simulation.REpiceaPredictor

addModelBasedSimulatorListener, doBlupsExistForThisSubject, doesThisSubjectHaveResidualErrorTerm, doRandomDeviatesExistForThisSubject, fireModelBasedSimulatorEvent, fireRandomEffectDeviateGeneratedEvent, getCruiseLineForThisSubject, getDefaultRandomEffects, getDefaultRandomEffects, getDefaultResidualError, getGaussianErrorTerms, getIntervalNestedInPlotDefinition, getParametersForThisRealization, getRandomEffectsForThisSubject, getResidualError, getResidualErrorForThisSubject, getSubjectPlusMonteCarloSpecificId, getSubjectPlusMonteCarloSpecificId, hasSubjectBeenTestedForBlups, recordSubjectTestedForBlups, removeModelBasedSimulatorListener, setBlupsForThisSubject, setDefaultRandomEffects, setDefaultResidualError, setDeviatesForRandomEffectsOfThisSubject, setParameterEstimates

Methods inherited from class repicea.simulation.SensitivityAnalysisParameter

getParameterEstimates

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MathildeClimatePredictor

public MathildeClimatePredictor(boolean isVariabilityEnabled)

MathildeClimatePredictor

protected MathildeClimatePredictor(boolean isParameterVariabilityEnabled,
                                   boolean isRandomEffectVariabilityEnabled,
                                   boolean isResidualVariabilityEnabled)

Method Detail

setRepresentativeConcentrationPathway

public void setRepresentativeConcentrationPathway(REpiceaClimateGenerator.RepresentativeConcentrationPathway rcp)

Sets the Representative Concentration Pathway rcp for the climate generator.

Parameters:

rcp - an RepresentativeConcentrationPathway enum

init

protected final void init()

Description copied from class: REpiceaPredictor

This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.

Specified by:

init in class REpiceaPredictor

getReferenceStands

protected static java.util.List<MathildeClimatePlot> getReferenceStands()

This method returns a copy of static member referenceStands.

Returns:

a List of MathildeClimateStandImpl instances

getFixedEffectPrediction

protected final double getFixedEffectPrediction(MathildeClimatePlot plot,
                                                Matrix currentBeta,
                                                Matrix rcpModifiedBeta)

simulateDeviatesForRandomEffectsOfThisSubject

protected Matrix simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject subject,
                                                               Estimate<?> randomEffectsEstimate)

Description copied from class: REpiceaPredictor

This method simulates random deviates from an estimate and stores them in the simulatedRandomEffects member.

Overrides:

simulateDeviatesForRandomEffectsOfThisSubject in class REpiceaPredictor

Parameters:

subject - a MonteCarloSimulationCompliantObject instance

randomEffectsEstimate - the estimate from which the random deviates are generated

Returns:

the random deviates as a Matrix instance (a copy of it)

getBlupsForThisSubject

protected Estimate<? extends StandardGaussianDistribution> getBlupsForThisSubject(MonteCarloSimulationCompliantObject subject)

Description copied from class: REpiceaPredictor

This method returns the blups for the subject or nothing if there is no blups for this subject

Overrides:

getBlupsForThisSubject in class REpiceaPredictor

Parameters:

subject - a MonteCarloSimulationCompliantObject instance

Returns:

an Estimate instance or null

getRandomEffects

protected final Matrix getRandomEffects(MonteCarloSimulationCompliantObject subject)

getClimateVariables

public REpiceaClimateVariableMap getClimateVariables(MathildeClimatePlot plot)

Description copied from interface: REpiceaClimateGenerator

Returns a map of climate variables depending on the geographical coordinates of the plot.

Specified by:

getClimateVariables in interface REpiceaClimateGenerator<MathildeClimatePlot>

Parameters:

plot - a GeographicalCoordinatesProvider instance

Returns:

a REpiceaClimateVariableMap-derived instance

getClimateTrendForThisStand

public REpiceaClimateChangeTrend getClimateTrendForThisStand(MonteCarloSimulationCompliantObject plot)

Description copied from interface: REpiceaClimateChangeGenerator

Returns Map of the annual changes for the different climate variable for a MonteCarloSimulationCompliantObject instance, typically a plot.

Specified by:

getClimateTrendForThisStand in interface REpiceaClimateChangeGenerator<MathildeClimatePlot>

Parameters:

plot - a MonteCarloSimulationCompliantObject instance

Returns:

a Map of ClimateVariable (key) and Double (value)