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AbstractAppVersion - Class in repicea.app
This class retrieves the revision that defines the version of the application.
AbstractAppVersion(String, String) - Constructor for class repicea.app.AbstractAppVersion
 
AbstractAppVersionCompiler - Class in repicea.app
This class records the last version number from the svn repository.
AbstractAppVersionCompiler() - Constructor for class repicea.app.AbstractAppVersionCompiler
 
AbstractDesigner<C> - Class in lerfob.carbonbalancetool
Deprecated.
AbstractDesigner() - Constructor for class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
AbstractEventExecutor<L extends java.util.EventListener,E extends java.util.EventObject> - Class in repicea.util
 
AbstractEventExecutor(L, E) - Constructor for class repicea.util.AbstractEventExecutor
 
AbstractGenericEngine - Class in repicea.app
The AbstractGenericEngine class implements all the methods to run an application.
AbstractGenericEngine() - Constructor for class repicea.app.AbstractGenericEngine
Protected constructor for derived class.
AbstractGenericTask - Class in repicea.app
This class is the basic class for all the GenericTask classes.
AbstractGenericTask() - Constructor for class repicea.app.AbstractGenericTask
Empty constructor.
AbstractMathematicalFunction - Class in repicea.math
The AbstractMathematicalFunction class suits mathematical function that can be derived.
AbstractMathematicalFunction() - Constructor for class repicea.math.AbstractMathematicalFunction
 
AbstractMathematicalFunctionWrapper - Class in repicea.math
The AbstractMathematicalFunctionWrapper class makes it possible to create a function that is based on a nested AbstractMathematicalFunction instance.
AbstractMathematicalFunctionWrapper(AbstractMathematicalFunction) - Constructor for class repicea.math.AbstractMathematicalFunctionWrapper
Constructor.
AbstractOptimizer - Class in repicea.math.optimizer
This class is the main class for all optimizers.
AbstractOptimizer() - Constructor for class repicea.math.optimizer.AbstractOptimizer
Default constructor.
AbstractOptimizer.LineSearchMethod - Enum in repicea.math.optimizer
 
AbstractOptimizer.OptimizationException - Exception in repicea.math.optimizer
The OptimizationException class encompasses all the exception that can be thrown when the optimizer fails to reach convergence.
AbstractProcessor - Class in lerfob.carbonbalancetool.productionlines
 
AbstractProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.AbstractProcessor
 
AbstractProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
AbstractProcessorButton(SystemPanel, Processor) - Constructor for class lerfob.carbonbalancetool.productionlines.AbstractProcessorButton
Constructor.
AbstractProcessorButton(SystemPanel, Processor, REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.AbstractProcessorButton
Constructor.
AbstractProcessorLinkLine - Class in repicea.simulation.processsystem
 
AbstractProcessorLinkLine(SystemPanel, AnchorProvider, AnchorProvider) - Constructor for class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
AbstractProductionLineProcessor - Class in lerfob.carbonbalancetool.productionlines
An abstract for all Processor-derived classes (except the LogCategoryProcessor), which ensures the Processor-derived class contains a CarbonUnitFeature instance and that this CarbonUnitFeature instance can be shown in the GUI.
AbstractProductionLineProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.AbstractProductionLineProcessor
 
AbstractServer - Class in repicea.net.server
 
AbstractServer(ServerConfiguration, boolean) - Constructor for class repicea.net.server.AbstractServer
Constructor.
AbstractServer.ServerReply - Enum in repicea.net.server
 
AbstractStatisticalModel<D extends StatisticalDataStructure> - Class in repicea.stats.model
The AbstractStatisticalModel class implements the StatisticalModel interface.
AbstractStatisticalModel(DataSet) - Constructor for class repicea.stats.model.AbstractStatisticalModel
Default constructor.
AbstractStemTaperEstimate - Class in repicea.simulation.stemtaper
The StemTaperEstimate class extends the Estimate class.
AbstractStemTaperEstimate(List<Double>) - Constructor for class repicea.simulation.stemtaper.AbstractStemTaperEstimate
Constructor.
AbstractStemTaperPredictor - Class in repicea.simulation.stemtaper
This interface is the basis for any stem taper model.
AbstractStemTaperPredictor(boolean, boolean, boolean) - Constructor for class repicea.simulation.stemtaper.AbstractStemTaperPredictor
 
AbstractStemTaperPredictor.BasicStemTaperTree - Interface in repicea.simulation.stemtaper
 
ACCDB - Static variable in class repicea.io.GFileFilter
 
accept(File) - Method in class repicea.io.GFileFilter
 
accept(File) - Method in class repicea.simulation.treelogger.TreeLoggerParameters.TreeLoggerParametersFileFilter
 
AcceptableDropComponent<P> - Interface in repicea.gui.dnd
This interface should be implemented by Component derived classes that accept a drop.
acceptTheseStands(ArrayList<CATCompatibleStand>) - Method in class lerfob.carbonbalancetool.CATFrame
This method is either called by a drag and drop event or externally by another application.
acceptThisObject(ArrayList<CATCompatibleStand>, DropTargetDropEvent) - Method in class lerfob.carbonbalancetool.CATFrame
 
acceptThisObject(P, DropTargetDropEvent) - Method in interface repicea.gui.dnd.AcceptableDropComponent
This method deals with the object being accepted from the drop.
acceptThisObject(D, DropTargetDropEvent) - Method in class repicea.gui.dnd.DnDPanel
 
acceptThisObject(Processor, DropTargetDropEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
actionPerformed(ActionEvent) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
actionPerformed(ActionEvent) - Method in class lerfob.carbonbalancetool.CATFrame
From ActionListener interface.
actionPerformed(ActionEvent) - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
actionPerformed(ActionEvent) - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
actionPerformed(ActionEvent) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
actionPerformed(ActionEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
actionPerformed(ActionEvent) - Method in class repicea.console.MainDialog
 
actionPerformed(ActionEvent) - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
actionPerformed(ActionEvent) - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
actionPerformed(ActionEvent) - Method in class repicea.gui.components.REpiceaTabbedPane
 
actionPerformed(ActionEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
actionPerformed(ActionEvent) - Method in class repicea.gui.components.REpiceaTable
 
actionPerformed(ActionEvent) - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
actionPerformed(ActionEvent) - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
 
actionPerformed(ActionEvent) - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
actionPerformed(ActionEvent) - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
actionPerformed(ActionEvent) - Method in class repicea.gui.genericwindows.REpiceaTipDialog
 
ActionPerformed - Static variable in class repicea.gui.REpiceaAWTProperty
 
actionPerformed(ActionEvent) - Method in class repicea.io.REpiceaIOFileHandlerUI
 
actionPerformed(ActionEvent) - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
actionPerformed(ActionEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
actionPerformed(ActionEvent) - Method in class repicea.io.tools.REpiceaExportToolDialog
 
actionPerformed(ActionEvent) - Method in class repicea.net.RemoteActionListener
 
actionPerformed(ActionEvent) - Method in class repicea.net.server.ClientThread
 
actionPerformed(ActionEvent) - Method in class repicea.net.server.gui.ServerDialog
 
actionPerformed(ActionEvent) - Method in class repicea.serial.REpiceaMemorizerHandler
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.processsystem.ToolPanel
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.processsystem.ToolPanel.KeyEventHandler
 
actionPerformed(ActionEvent) - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
actualizeCarbon(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method actualizes the carbon content of this carbon unit.
actualizeCarbon(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method actualizes the EndProduct instance on a basis that is specified through the time scale parameter.
actualizeCarbonUnits(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method actualizes the different carbon units.
actualizeCarbonUnits(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
This method actualizes the different carbon units.
actualizeTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
AdaptativeGaussHermiteQuadrature - Class in repicea.stats.integral
The AdaptativeGaussHermiteQuadrature class implements the adaptative algorithm, i.e.
AdaptativeGaussHermiteQuadrature(GaussQuadrature.NumberOfPoints) - Constructor for class repicea.stats.integral.AdaptativeGaussHermiteQuadrature
Constructor.
adaptSourceToTransferable(DragGestureEvent) - Method in class repicea.gui.dnd.DragGestureImpl
 
adaptSourceToTransferable(DragGestureEvent) - Method in class repicea.simulation.processsystem.DnDCompatibleButton.InternalDragGestureImpl
 
add(Estimate<?>, Color, Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
add(double, double) - Method in class lerfob.carbonbalancetool.gui.XYSeriesWithIntegratedRenderer
 
add(CarbonUnit) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitList
 
add(CarbonUnitMap<T>) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitMap
 
add(Collection<CarbonUnit>) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitMap
 
add(REpiceaSlider) - Method in class repicea.gui.components.REpiceaSliderGroup
This method adds a REpiceaSlider instance to the group.
add(Component) - Method in class repicea.gui.dnd.DnDPanel
 
add(GExportRecord) - Method in class repicea.io.REpiceaRecordSet
 
add(T) - Method in class repicea.math.FastArrayList
 
add(Matrix) - Method in class repicea.math.Matrix
This method add matrix m to the current matrix.
add(Matrix, Matrix) - Static method in class repicea.math.MatrixUtility
This method adds a matrix to a reference matrix.
add(E, double) - Method in class repicea.simulation.processsystem.AmountMap
This method add a particular amount in a key.
add(GaussianErrorTerm) - Method in class repicea.stats.distributions.GaussianErrorTermList
 
add(BootstrapHybridPointEstimate) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns a MonteCarloEstimate instance that results from the sum of two MonteCarloEstimate instances with the same number of realizations.
add(MonteCarloEstimate) - Method in class repicea.stats.estimates.MonteCarloEstimate
This method returns a MonteCarloEstimate instance that results from the sum of two MonteCarloEstimate instances with the same number of realizations.
add(PointEstimate<?>) - Method in class repicea.stats.estimates.PointEstimate
 
add(PointEstimate<?>) - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
add(PointEstimate<?>) - Method in class repicea.stats.estimates.PopulationTotalEstimate
 
add(E) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
add(int, E) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
addAll(Collection) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitList
 
addAll(int, Collection<? extends E>) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
addAll(Collection<? extends E>) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
addAllAbsent(Collection<? extends E>) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
addBootstrapHybridEstimate(BootstrapHybridPointEstimate) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method is useful for large simulations.
addChangeListener(DatasetChangeListener) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
addComboBoxEntryPropertyListener(PropertyChangeListener) - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
addDefaultRecord() - Method in class repicea.gui.components.REpiceaTableModel
 
addDispatcher(String) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
This method adds a new dispatcher with its name being the log category name.
addElementsAt(List<Integer>, Matrix) - Method in class repicea.math.Matrix
This method add the elements of the parameter matrix to those designated through the indices.
addFatherCompartment(CATCompartment) - Method in class lerfob.carbonbalancetool.CATCompartment
 
addField(P) - Method in class repicea.io.FormatHeader
This method adds a field into the field list and synchronizes the field index.
addField(GExportFieldDetails) - Method in class repicea.io.GExportRecord
This method serves to add a field to the record.
addField(String, Object[]) - Method in class repicea.stats.data.DataSet
 
addIfAbsent(E) - Method in class repicea.util.FixedSizeCopyOnWriteArrayList
 
additionalGradients - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
additionalGradientTermUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
additionalHessians - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
additionalHessianTermUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
additionalLlkTerm - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
additionalLlkTermUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
addLayoutComponent(String, Component) - Method in class repicea.simulation.processsystem.SystemLayout
 
addLinkLine(ValidProcessorLinkLine) - Method in class repicea.simulation.processsystem.SystemPanel
 
addManagerComponents() - Method in class lerfob.carbonbalancetool.productionlines.ExtendedSystemPanel
 
addManagerComponents() - Method in class repicea.gui.dnd.DnDPanel
 
addManagerComponents() - Method in class repicea.simulation.processsystem.SystemPanel
 
addMarketModel(ProductionLine) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
addMatch(LogCategoryToMarketMatch) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
addMatches(Enum<E>[]) - Method in class repicea.gui.components.REpiceaMatchSelector
This method adds a potential treatment to the list of available treatments
addModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
 
addModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
 
addModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class repicea.simulation.REpiceaPredictor
This method adds the listener instance to the list of listeners.
addNumberFieldListener(NumberFormatFieldFactory.NumberFieldListener) - Method in class repicea.gui.components.NumberFormatFieldFactory.JFormattedNumericField
This method adds a listener from the list of listener if it is not already contained in the list.
addObservation(Object[]) - Method in class repicea.stats.data.DataSet
 
addObservation(O) - Method in class repicea.stats.estimates.PointEstimate
This method adds an observation to the sample.
addObservation(PopulationUnitWithEqualInclusionProbability) - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
addOccurrenceDateYr(int) - Method in class repicea.simulation.disturbances.DisturbanceOccurrences
 
addOptimizerListener(OptimizerListener) - Method in class repicea.math.optimizer.AbstractOptimizer
 
addParameter(int, int, double) - Method in class repicea.simulation.ParameterMap
This method stores a double in the map at the specified indices.
addParameter(int, double) - Method in class repicea.simulation.ParameterMap
This method does the same than addParameter(index1, index2, vec) except it is for a one-index implementation.
addParameter(double) - Method in class repicea.simulation.ParameterMap
This method does the same than addParameter(index1, index2, vec) except it is for a no-index implementation.
addPointEstimate(PointEstimate<?>) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method adds a realization of the point estimate.
addProcessorButton(ProcessorButton) - Method in class repicea.simulation.processsystem.SystemPanel
 
addProcessUnit(ProcessUnit<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
addProcessUnit(ProcessUnit<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
 
addProcessUnit(ProcessUnit<E>) - Method in class repicea.simulation.processsystem.ProcessUnit
 
addProductionLineManagerChangeListener(ProductionLineManagerChangeListener) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method adds a ProductionLineManagerChangeListener instance if it is not already contained in the listeners.
addPropertyChangeListener(PropertyChangeListener) - Method in interface repicea.multiprocess.IndependentProcess
This method add a listener to the instance of this class if it is not already included in the listeners list.
addPropertyChangeListener(PropertyChangeListener) - Method in class repicea.net.server.AbstractServer
 
addPropertyChangeListener(PropertyChangeListener) - Method in class repicea.util.PropertyChangeEventGeneratingClass
This method adds a PropertyChangeListener instance to the list of listeners.
addRealization(Matrix) - Method in class repicea.stats.distributions.EmpiricalDistribution
This method sets a given observation of the nonparametric distribution.
addRealization(PopulationMeanEstimate) - Method in class repicea.stats.estimates.LawOfTotalVarianceMonteCarloEstimate
This method is a surrogate for addRealization(Matrix) method.
addRealization(Matrix) - Method in class repicea.stats.estimates.LawOfTotalVarianceMonteCarloEstimate
 
addRecord(Object[]) - Method in class repicea.io.FormatWriter
This method writes a record in the output file.
addRecord(Object[]) - Method in class repicea.io.javacsv.CSVWriter
 
addRecord(Object[]) - Method in class repicea.io.javadbf.DBFWriter
Add a record.
addRecord(Object[]) - Method in class repicea.io.javasql.SQLWriter
 
addRecord(GExportRecord) - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
addRecordSet(REpiceaRecordSet) - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
addRow(Object[]) - Method in class repicea.gui.components.REpiceaTableModel
 
addSaveThread(REpiceaExportTool.InternalWorkerForSaveMethod) - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
addSegment(int, int, REpiceaClimateVariableChangeMap) - Method in class repicea.simulation.climate.REpiceaClimateChangeTrend
 
addSelectableButton(ToolButton) - Method in class repicea.simulation.processsystem.ToolPanel
 
addStatus(CarbonUnit.CarbonUnitStatus) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
addSubProcessor(Processor) - Method in class repicea.simulation.processsystem.Processor
This method adds a process to the sub processes.
addTab(String, Component) - Method in class repicea.gui.components.REpiceaTabbedPane
 
addTask(GenericTask) - Method in class repicea.app.AbstractGenericEngine
This method add a GenericTask instance in the queue of tasks.
addTasks(List<GenericTask>) - Method in class repicea.app.AbstractGenericEngine
This method add a bunch of tasks in the queue of tasks.
addToClassPath(String) - Static method in class repicea.lang.REpiceaSystem
Dynamically adds a directory or a JAR file to the class path.
addToSendingQueue(Serializable) - Method in class repicea.net.RemoteEventManager
 
addTree(FrenchHDRelationship2018TreeImpl) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
addTree(AWSTreeImpl) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
addTreeLoggerChangeListener(TreeLoggerChangeListener) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
This method adds a TreeLoggerChangeListener instance to the listeners only and only if the listeners do not already contain the instance.
addTreeLoggerListener(PropertyChangeListener) - Method in class repicea.simulation.treelogger.TreeLogger
This method adds the listener instance if it is not already contained in the listeners list.
addVFieldAndValue(String, Object) - Method in class repicea.io.javasql.StatementMaker
 
addWindowTrackerListener(UIToolKit.WindowTrackerListener) - Static method in class repicea.gui.UIToolKit
 
addWoodPiece(Tree, WoodPiece) - Method in class repicea.simulation.treelogger.TreeLogger
This method adds a WoodPiece instance in the set of WoodPiece associated to the LoggableTree tree.
AgeYrProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its age.
AlbrechtWindStormModel - Class in lerfob.windstormdamagemodels.awsmodel
This class implements the equations of the different submodels that are part of Albrecht et al.'s wind storm model.
AlbrechtWindStormModel() - Constructor for class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
General constructor.
AlbrechtWindStormModelUI - Class in lerfob.windstormdamagemodels.awsmodel
 
AlbrechtWindStormModelUI(AlbrechtWindStormModel) - Constructor for class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
ALIGN_LEFT - Static variable in class repicea.io.javadbf.Utils
 
ALIGN_RIGHT - Static variable in class repicea.io.javadbf.Utils
 
AllometryCalculableTree - Interface in repicea.simulation.allometrycalculator
The AllometryCalculableTree is an interface that enables the calculation of basal area, mean quadratic diameter, etc...
AllometryCalculator - Class in repicea.simulation.allometrycalculator
This calculator provides the basic allometric features, such as the basal area, the mean quadratic diameter, etc.
AllometryCalculator() - Constructor for class repicea.simulation.allometrycalculator.AllometryCalculator
 
AllSpecies - Static variable in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
AmountMap<E extends java.lang.Enum<?>> - Class in repicea.simulation.processsystem
The AmountMap class contains all the quantities that can be contained in a ProcessUnit instance.
AmountMap() - Constructor for class repicea.simulation.processsystem.AmountMap
 
ancestorAdded(AncestorEvent) - Method in class repicea.gui.REpiceaPanel
 
ancestorMoved(AncestorEvent) - Method in class repicea.gui.REpiceaPanel
 
ancestorRemoved(AncestorEvent) - Method in class repicea.gui.REpiceaPanel
 
anchorLocation(Point) - Method in class lerfob.carbonbalancetool.CATFrame
 
anchorLocation(Point) - Method in class repicea.gui.REpiceaFrame
 
AnchorProvider - Interface in repicea.simulation.processsystem
 
angleCalculated - Variable in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
angleMap - Variable in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
ANY_SPECIES - Static variable in class repicea.simulation.treelogger.TreeLoggerParameters
 
anyElementDifferentFrom(double) - Method in class repicea.math.Matrix
This method tests whether if any element of the Matrix object is different from parameter d.
anyElementLargerThan(double) - Method in class repicea.math.Matrix
This method tests whether if any element of the Matrix object is larger than parameter d.
anyElementSmallerOrEqualTo(double) - Method in class repicea.math.Matrix
This method tests whether if any element of the Matrix object is smaller than or equal to parameter d.
appendFile - Variable in class repicea.io.FormatWriter
 
appendFileEnabled - Variable in class repicea.io.tools.ExportTool
Deprecated.
 
appendFileEnabled - Variable in class repicea.io.tools.REpiceaExportTool
 
applicationMenu - Variable in class repicea.console.MainDialog
 
ApplicationScaleProvider - Interface in repicea.simulation
This interface ensures the stand can provide the scale at which the model applies.
ApplicationScaleProvider.ApplicationScale - Enum in repicea.simulation
 
areaHa - Variable in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
AreaHaProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the plot can provide its area in ha.
areTheseTwoObjectsComparable(Object, Object) - Static method in class repicea.serial.xml.XmlMarshallingUtilities
This method marshalles and compares two instances.
asciiEncoding - Variable in class repicea.console.MainDialog
 
askUserBeforeExit - Variable in class repicea.gui.REpiceaDialog
 
askUserBeforeExit() - Method in class repicea.gui.REpiceaDialog
 
askUserBeforeExit - Variable in class repicea.gui.REpiceaFrame
 
askUserBeforeExit() - Method in class repicea.gui.REpiceaFrame
 
askUserBeforeExit() - Method in interface repicea.gui.REpiceaWindow
 
AsymmetricalCategoryDataset - Class in lerfob.carbonbalancetool.gui
The AsymmetricalCategoryDataset class is the Dataset class required to draw histograms with asymmetrical error bars.
AsymmetricalCategoryDataset(double, double) - Constructor for class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
AutomatedHelper - Class in repicea.gui
The automatedHelper class contains a method and its arguments to be called when the Help button is hit.
AutomatedHelper(Method, Object[]) - Constructor for class repicea.gui.AutomatedHelper
The constructor requires the help method and its arguments.
averageIntake - Variable in class repicea.simulation.processsystem.Processor
Deprecated.
averageLifetime - Variable in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
IMPORTANT: This field can be either the average lifetime or the half-life.
averageLifetimeTextField - Variable in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
AWSDefaultValuesSet(double, double, double) - Constructor for class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables.AWSDefaultValuesSet
 
AWSModelCore - Class in lerfob.windstormdamagemodels.awsmodel
This class implements the core of Albrecht et al.'s wind storm model.
AWSModelCore() - Constructor for class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
General constructor for Albrecht et al.'s wind storm model
AWSModelCore.RandomEffectID - Enum in lerfob.windstormdamagemodels.awsmodel
 
AWSModelCore.SubModelID - Enum in lerfob.windstormdamagemodels.awsmodel
This Enum variable defines the different steps to implement in order to obtain predictions.
AWSReferenceTables - Class in lerfob.windstormdamagemodels.awsmodel
This class handles the data and the methods that provides the yield tables and the relative dominant height/dominant diameter ratio for the Albrecht Wind Storm Model.
AWSReferenceTables() - Constructor for class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables
Empty constructor
AWSReferenceTables.AWSDefaultValuesSet - Class in lerfob.windstormdamagemodels.awsmodel
This nested class provides a set of default values.
AWSStand - Interface in lerfob.windstormdamagemodels.awsmodel
The AlbrechtWindStormModelStand interface defines the stand-level methods necessary to Albrecht et al.'s wind storm model.
AWSStand.StandVariable - Enum in lerfob.windstormdamagemodels.awsmodel
This Enum variable defines all the stand-level variables required by this model.
AWSStandImpl - Class in lerfob.windstormdamagemodels.awsmodel
This class is an implementation of the AWSStand and AWSTreatment.
AWSStandImpl(String, AWSTree.AWSTreeSpecies, double, double, int, double, double, boolean, double, double, double, boolean, int, double, double, double, double, int, double, double, Double, double[]) - Constructor for class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
AWSStandImpl.TestStandVariable - Enum in lerfob.windstormdamagemodels.awsmodel
 
AWSTreatment - Interface in lerfob.windstormdamagemodels.awsmodel
 
AWSTreatment.TreatmentVariable - Enum in lerfob.windstormdamagemodels.awsmodel
This Enum variable defines all the treatment-related variables required by this model.
AWSTree - Interface in lerfob.windstormdamagemodels.awsmodel
This interface provides the method required at the tree level to implement Albrecht et al.'s wind storm model.
AWSTree.AWSTreeSpecies - Enum in lerfob.windstormdamagemodels.awsmodel
The TreeSpecies enum defines the species considered in the model.
AWSTree.TreeVariable - Enum in lerfob.windstormdamagemodels.awsmodel
 
AWSTreeComparator() - Constructor for class lerfob.windstormdamagemodels.awsmodel.CommonUtility.AWSTreeComparator
 
AWSTreeImpl - Class in lerfob.windstormdamagemodels.awsmodel
Simple implementation of AWSTree for testing.
AWSTreeImpl(AWSTree.AWSTreeSpecies, double, double, double) - Constructor for class lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl
 
AWSTreeImpl.TestTreeVariable - Enum in lerfob.windstormdamagemodels.awsmodel
 

B

backdoorThread - Variable in class repicea.net.server.JavaLocalGatewayServer
 
BarkProportionProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the instance can provide the bark proportion with respect to the wood volume.
BasalAreaLargerThanSubjectM2Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide the basal area of the trees with larger diameter than its own dbh.
BasalAreaM2HaProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its own basal area.
BasalAreaM2Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its own basal area.
BasicBound - Class in repicea.stats.distributions
The basic class for bounded distributions.
BasicBound(boolean) - Constructor for class repicea.stats.distributions.BasicBound
 
BasicClient - Class in repicea.net.server
 
BasicClient(InetSocketAddress, int) - Constructor for class repicea.net.server.BasicClient
Constructor.
BasicClient(InetSocketAddress, int, ServerConfiguration.Protocol, boolean) - Constructor for class repicea.net.server.BasicClient
Constructor.
BasicClient.BasicClientException - Exception in repicea.net.server
 
BasicClient.ClientRequest - Enum in repicea.net.server
 
BasicClient.ExceptionType - Enum in repicea.net.server
 
basicDensityFromModelChkBox - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
BasicLogCategory - Class in lerfob.treelogger.basictreelogger
The BasicLogCategory class is the basic implementation of the TreeLogCategory abstract class.
BasicLogCategory(String, String, double) - Constructor for class lerfob.treelogger.basictreelogger.BasicLogCategory
Constructor.
BasicSerialCloner - Class in repicea.serial.cloner
The TemporaryMemorizer class is useful to memorize objects for a short period of time.
BasicSerialCloner() - Constructor for class repicea.serial.cloner.BasicSerialCloner
Constructor for this class.
BasicTreeLogger - Class in lerfob.treelogger.basictreelogger
 
BasicTreeLogger() - Constructor for class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
BasicTreeLoggerParameters - Class in lerfob.treelogger.basictreelogger
 
BasicTreeLoggerParameters() - Constructor for class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
Default constructor.
BasicTreeLoggerParameters.MessageID - Enum in lerfob.treelogger.basictreelogger
 
BasicTreeLoggerParametersDialog - Class in lerfob.treelogger.basictreelogger
 
BasicTreeLoggerParametersDialog(Window, BasicTreeLoggerParameters) - Constructor for class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
BasicTreeLoggerWoodPiece - Class in lerfob.treelogger.basictreelogger
 
BasicTreeLoggerWoodPiece(LogCategory, LoggableTree, boolean, double) - Constructor for class lerfob.treelogger.basictreelogger.BasicTreeLoggerWoodPiece
 
basicWoodDensityFactors - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
Deprecated.
basicWoodDensityFromModel - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
basicWoodDensityFromModelEnabled - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
BasicWoodDensityProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the instance can provide its basic wood density.
betaVector - Variable in class repicea.math.optimizer.AbstractOptimizer
 
biomassComboBox - Variable in class lerfob.carbonbalancetool.CATFrame
 
biomassFUTextField - Variable in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
BiomassParameters - Class in lerfob.carbonbalancetool.biomassparameters
 
BiomassParameters(REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
Empty constructor for class.newInstance() call.
BiomassParameters() - Constructor for class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
Empty constructor for class.newInstance() call.
BiomassParametersDialog - Class in lerfob.carbonbalancetool.biomassparameters
 
BiomassParametersDialog(Window, BiomassParameters) - Constructor for class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
Constructor.
BiomassParametersDialog.MessageID - Enum in lerfob.carbonbalancetool.biomassparameters
 
biomassParametersMap - Variable in class lerfob.carbonbalancetool.CATSettings
 
blupImplementation(Stand, HDRelationshipPredictor.RegressionElements) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method accounts for the random effects in the predictions if the random effect variability is enabled.
BLUPS_JUST_SET - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
BoldStroke - Static variable in class repicea.simulation.processsystem.UISetup
 
BootstrapHybridPointEstimate - Class in repicea.stats.estimates
This class implements the bootstrap estimator of the total as developed by Fortin et al.
BootstrapHybridPointEstimate() - Constructor for class repicea.stats.estimates.BootstrapHybridPointEstimate
 
BootstrapHybridPointEstimate.VariancePointEstimate - Class in repicea.stats.estimates
 
BouchonVolumeEquations - Class in lerfob.allometricrelationships
This class implements Bouchon's volume equation for oak and European beech.
BouchonVolumeEquations() - Constructor for class lerfob.allometricrelationships.BouchonVolumeEquations
 
Bound(boolean) - Constructor for class repicea.stats.distributions.TruncatedGaussianDistribution.Bound
 
boundedClasses - Static variable in class repicea.serial.xml.XmlMarshallingUtilities
 
BoundedDistribution - Interface in repicea.stats.distributions
 
branchExpansionFactorBroadleaved - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
branchExpansionFactorConiferous - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
branchExpansionFactorFromModel - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
branchExpansionFactorFromModelEnabled - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
branchExpansionFactors - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
branchFromModelChkBox - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
browseAction(Component, int, String, List<FileFilter>, int) - Static method in class repicea.gui.CommonGuiUtility
This method instantiates a JFileChooser and returns the result in the FileChooserOutput object.
browseAction(Component, int, String, List<FileFilter>, int, FileSystemView) - Static method in class repicea.gui.CommonGuiUtility
This method instantiates a JFileChooser and returns the result in the FileChooserOutput object.
BrowserCaller - Class in repicea.net
This method opens a web browser given an URL.
BrowserCaller() - Constructor for class repicea.net.BrowserCaller
 
button - Variable in class repicea.simulation.processsystem.DragGestureCreateLinkListener
 
button - Variable in class repicea.simulation.processsystem.ToolPanel.KeyEventHandler
 
ButtonDefaultBorder - Static variable in class repicea.simulation.processsystem.UISetup
 
buttonMoveRecognizer - Variable in class repicea.simulation.processsystem.ProcessorButton
 
ButtonSelectedBorder - Static variable in class repicea.simulation.processsystem.UISetup
 
BWDModel - Class in lerfob.windstormdamagemodels.bockwindddamagemodel
This class implements the wind damage model found in Bock et al.
BWDModel() - Constructor for class lerfob.windstormdamagemodels.bockwindddamagemodel.BWDModel
Simple constructor for this class
BWDStand - Interface in lerfob.windstormdamagemodels.bockwindddamagemodel
This interface ensures the compatibility of a Stand instance with Bock et al.'s wind damage model.
BWDTree - Interface in lerfob.windstormdamagemodels.bockwindddamagemodel
This interface ensures the compatibility of a Tree instance with Bock et al.'s wind damage model.
bypassShutdownForTesting - Variable in class repicea.net.server.JavaLocalGatewayServer
 
BySpeciesSelectionProperty - Static variable in class lerfob.carbonbalancetool.CATOptionPanel
 

C

C_C02_FACTOR - Static variable in class lerfob.carbonbalancetool.CATSettings
 
C_CH4_FACTOR - Static variable in class lerfob.carbonbalancetool.CATSettings
 
Calculable - Interface in repicea.math.formula
The calculable interface ensures the instance returns a double.
calculate() - Method in interface repicea.math.formula.Calculable
This method returns the result of the calculable instance.
calculate() - Method in class repicea.math.formula.MathFormula
 
calculateAndIntegrateCarbon() - Method in class lerfob.carbonbalancetool.CATCompartment
This method calculates and integrates the carbon for this compartment by calling the method library and using the appropriate method.
calculateCarbon() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method launches the calculation of the different carbon compartments.
calculateConvergence(Matrix, Matrix, double) - Method in class repicea.math.optimizer.NewtonRaphsonOptimizer
This method returns a double that is the convergence indicator based on the gradient, the hessian and the value of the log-likelihood function.
calculateInCO2 - Variable in class lerfob.carbonbalancetool.CATFrame
 
caller - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
caller - Variable in class lerfob.carbonbalancetool.CATFrame
 
caller - Variable in class repicea.console.MainDialog
 
caller - Variable in class repicea.net.server.ClientThread
 
callHelp() - Method in class repicea.gui.AutomatedHelper
This method runs the help method with its argument.
canBeRunInInfiniteSequence() - Method in interface lerfob.carbonbalancetool.CATCompatibleStand
This method returns true if the carbon balance can be calculated in infinite sequence.
cancel() - Method in class repicea.app.AbstractGenericTask
 
cancel() - Method in interface repicea.app.GenericTask
This method is called to cancel a running task.
cancel() - Method in class repicea.multiprocess.JavaProcessWrapper
 
cancel() - Method in class repicea.simulation.treelogger.TreeLogger
 
cancel - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
cancelAction() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
cancelAction() - Method in class repicea.console.MainDialog
 
cancelAction() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
cancelAction() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
cancelAction() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
cancelAction() - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
cancelAction() - Method in class repicea.gui.REpiceaDialog
 
cancelAction() - Method in class repicea.gui.REpiceaFrame
 
cancelAction() - Method in interface repicea.gui.REpiceaWindow
 
cancelAction() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
cancelAction() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
cancelAction() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
cancelAction() - Method in class repicea.net.server.gui.ServerDialog
 
cancelAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
CancellableWarningMessage - Class in repicea.gui.genericwindows
This dialog shows a warning when the projection exceeds a particular numbers of steps It is possible to disable this warning through check box Author Mathieu Fortin - August 2009
CancellableWarningMessage(JDialog, String) - Constructor for class repicea.gui.genericwindows.CancellableWarningMessage
Constructor.
CancellableWarningMessage.MessageID - Enum in repicea.gui.genericwindows
 
cancelOnClose - Variable in class repicea.gui.REpiceaDialog
 
cancelOnClose - Variable in class repicea.gui.REpiceaFrame
 
cancelRunningTask() - Method in class repicea.app.AbstractGenericEngine
This method cancels the current task if the queue is not empty.
canImport(TransferHandler.TransferSupport) - Method in class repicea.gui.dnd.ReplaceTextTransferHandler
 
CarbonAccountingTool - Class in lerfob.carbonbalancetool
LERFoBCarbonAccountingTool is the class that implements a tool for the calculation of the carbon balance in a series of CarbonToolCompatibleStand instances (LERFoB-CAT).
CarbonAccountingTool() - Constructor for class lerfob.carbonbalancetool.CarbonAccountingTool
Constructor for stand alone application.
CarbonAccountingTool(CarbonAccountingTool.CATMode) - Constructor for class lerfob.carbonbalancetool.CarbonAccountingTool
Generic constructor.
CarbonAccountingTool.CATMode - Enum in lerfob.carbonbalancetool
 
carbonContentBroadleaved - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
carbonContentConiferous - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
carbonContentFactors - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
carbonContentFromModel - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
carbonContentFromModelChkBox - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
carbonContentFromModelEnabled - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
CarbonToolSettingsVector() - Constructor for class lerfob.carbonbalancetool.CATUtility.CarbonToolSettingsVector
 
CarbonUnit - Class in lerfob.carbonbalancetool.productionlines
A CarbonUnit instance is a piece of carbon.
CarbonUnit(int, String, CarbonUnitFeature, AmountMap<CarbonUnit.Element>, String) - Constructor for class lerfob.carbonbalancetool.productionlines.CarbonUnit
General constructor.
CarbonUnit.CarbonUnitStatus - Enum in lerfob.carbonbalancetool.productionlines
 
CarbonUnit.Element - Enum in lerfob.carbonbalancetool.productionlines
 
CarbonUnitFeature - Class in lerfob.carbonbalancetool.productionlines
 
CarbonUnitFeature(AbstractProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
CarbonUnitFeature.LifetimeMode - Enum in lerfob.carbonbalancetool.productionlines
 
CarbonUnitFeaturePanel - Class in lerfob.carbonbalancetool.productionlines
 
CarbonUnitFeaturePanel(CarbonUnitFeature) - Constructor for class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
CarbonUnitFeaturePanel.MessageID - Enum in lerfob.carbonbalancetool.productionlines
 
CarbonUnitList - Class in lerfob.carbonbalancetool.productionlines
This class handles the addition of carbon units in its own list.
CarbonUnitList() - Constructor for class lerfob.carbonbalancetool.productionlines.CarbonUnitList
 
CarbonUnitMap<T extends java.lang.Enum<?>> - Class in lerfob.carbonbalancetool.productionlines
 
CarbonUnitMap(T) - Constructor for class lerfob.carbonbalancetool.productionlines.CarbonUnitMap
 
caretUpdate(CaretEvent) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
This class listens to the text field of its Gui interface.
caretUpdate(CaretEvent) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
caretUpdate(CaretEvent) - Method in class repicea.io.tools.REpiceaExportTool
 
caretUpdate(CaretEvent) - Method in class repicea.simulation.processsystem.Processor
 
caretUpdate(CaretEvent) - Method in class repicea.simulation.treelogger.LogCategoryPanel
 
cast(Object) - Method in enum lerfob.windstormdamagemodels.awsmodel.AWSStand.StandVariable
 
cast(Object) - Method in enum lerfob.windstormdamagemodels.awsmodel.AWSTreatment.TreatmentVariable
 
cast(Object) - Method in enum lerfob.windstormdamagemodels.awsmodel.AWSTree.TreeVariable
 
CATAboveGroundBiomassProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its dry biomass.
CATAboveGroundCarbonProvider - Interface in lerfob.carbonbalancetool
This interface ensures that the instance can provide its above ground carbon in Mg.
CATAboveGroundVolumeProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its above ground volume.
CATAdditionalElementsProvider - Interface in lerfob.carbonbalancetool
This interface ensures that the wood piece can return its additional element concentrations.
CATBasicWoodDensityProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its basic wood density.
CATBasicWoodDensityProvider.AverageBasicDensity - Enum in lerfob.carbonbalancetool
Deprecated.
CATBelowGroundBiomassProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its dry below ground biomass.
CATBelowGroundCarbonProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its dry below ground carbon.
CATBelowGroundVolumeProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its belowground volume.
CATCarbonContentRatioProvider - Interface in lerfob.carbonbalancetool
This interface ensures the instance can provide its carbon content.
CATCarbonContentRatioProvider.AverageCarbonContent - Enum in lerfob.carbonbalancetool
This enum variable contains the average carbon content ratio.
CATCompartment - Class in lerfob.carbonbalancetool
The CarbonCompartment class handles the calculation of the carbon content for the different compartment (root, aboveground, wood products, etc.)
CATCompartment(CATCompartmentManager, CATCompartment.CompartmentInfo) - Constructor for class lerfob.carbonbalancetool.CATCompartment
General constructor for a CarbonCompartment object.
CATCompartment.CompartmentInfo - Enum in lerfob.carbonbalancetool
This enum contains basic information on the carbon compartments.
CATCompartment.PoolCategory - Enum in lerfob.carbonbalancetool
 
CATCompartmentCompileLibrary - Class in lerfob.carbonbalancetool
This class contains functions to compute either the integral of the carbon compartment or the evolution of carbon within this compartment.
CATCompartmentCompileLibrary() - Constructor for class lerfob.carbonbalancetool.CATCompartmentCompileLibrary
 
CATCompartmentManager - Class in lerfob.carbonbalancetool
 
CATCompartmentManager(CATSettings) - Constructor for class lerfob.carbonbalancetool.CATCompartmentManager
Constructor for this class
CATCompatibleEvenAgedStand - Interface in lerfob.carbonbalancetool
Deprecated.
CATCompatibleStand - Interface in lerfob.carbonbalancetool
This method ensures the stand is compatible with LERFoB-CAT.
CATCompatibleTree - Interface in lerfob.carbonbalancetool
The CarbonToolCompatibleTree interface ensures the tree is compatible with the carbon assessment tool.
CATDecayFunction - Class in lerfob.carbonbalancetool
The decay function interface is designated for lifetime decreasing functions.
CATDecayFunction() - Constructor for class lerfob.carbonbalancetool.CATDecayFunction
 
CATDecayFunction.ParameterID - Enum in lerfob.carbonbalancetool
 
CATDecayFunction.VariableID - Enum in lerfob.carbonbalancetool
 
CATDiameterBasedTreeLogCategory - Class in lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
CATDiameterBasedTreeLogCategory(Enum<?>, Enum<?>, double, double, double, boolean, DiameterBasedTreeLogCategory) - Constructor for class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogCategory
 
CATDiameterBasedTreeLogCategoryPanel - Class in lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
CATDiameterBasedTreeLogCategoryPanel(CATDiameterBasedTreeLogCategory) - Constructor for class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogCategoryPanel
 
CATDiameterBasedTreeLogger - Class in lerfob.carbonbalancetool.catdiameterbasedtreelogger
The CATDiameterBasedTreeLogger class implements a tree logger for CAT.
CATDiameterBasedTreeLogger() - Constructor for class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
CATDiameterBasedTreeLoggerParameters - Class in lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
CATDiameterBasedTreeLoggerParameters() - Constructor for class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
General constructor.
CATDiameterBasedTreeLoggerParameters.DefaultSpecies - Enum in lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
CATDiameterBasedTreeLoggerParametersDialog - Class in lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
CATDiameterBasedTreeLoggerParametersDialog(Window, CATDiameterBasedTreeLoggerParameters) - Constructor for class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParametersDialog
 
CATExponentialFunction - Class in lerfob.carbonbalancetool
This class provides an exponential function to act as decay function in the calculation of end product lifetime.
CATExponentialFunction() - Constructor for class lerfob.carbonbalancetool.CATExponentialFunction
 
CATExportTool - Class in lerfob.carbonbalancetool.io
 
CATExportTool(SettingMemory, CATSimulationResult) - Constructor for class lerfob.carbonbalancetool.io.CATExportTool
Constructor.
CATExportTool.ExportOption - Enum in lerfob.carbonbalancetool.io
 
CATFrame - Class in lerfob.carbonbalancetool
The CarbonAccountingToolDialog is the UI interface of the CarbonAccountingTool class.
CATFrame(CarbonAccountingTool, Window) - Constructor for class lerfob.carbonbalancetool.CATFrame
General constructor of this class.
CATFrame.MessageID - Enum in lerfob.carbonbalancetool
 
CATGaussianSensitivityAnalysisParameter - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATGaussianSensitivityAnalysisParameter(double) - Constructor for class lerfob.carbonbalancetool.sensitivityanalysis.CATGaussianSensitivityAnalysisParameter
 
CATGrowthSimulationImportFromOtherApp - Class in lerfob.carbonbalancetool.io
The CATGrowthSimulationImportFromOtherApp class makes it possible to import data from other applications.
CATGrowthSimulationImportFromOtherApp() - Constructor for class lerfob.carbonbalancetool.io.CATGrowthSimulationImportFromOtherApp
 
CATGrowthSimulationRecordReader - Class in lerfob.carbonbalancetool.io
 
CATGrowthSimulationRecordReader() - Constructor for class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
General constructor.
CATGrowthSimulationRecordReader.CATGrowthSimulationFieldID - Enum in lerfob.carbonbalancetool.io
 
CATGrowthSimulationRecordReader.CATGrowthSimulationFieldLevel - Enum in lerfob.carbonbalancetool.io
 
CATGrowthSimulationRecordReader.MessageID - Enum in lerfob.carbonbalancetool.io
 
CATGrowthSimulationSpeciesSelector - Class in lerfob.carbonbalancetool.io
 
CATGrowthSimulationSpeciesSelector(Object[]) - Constructor for class lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector
 
CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog - Class in lerfob.carbonbalancetool.io
 
CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog.MessageID - Enum in lerfob.carbonbalancetool.io
 
CATGrowthSimulationSpeciesSelector.ColumnName - Enum in lerfob.carbonbalancetool.io
 
CATGrowthSimulationSpeciesSelectorDialog(CATGrowthSimulationSpeciesSelector, Window, Object[]) - Constructor for class lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog
 
CATOptionPanel - Class in lerfob.carbonbalancetool
This inner class is just a JPanel with check boxes to display the compartment options.
CATOptionPanel() - Constructor for class lerfob.carbonbalancetool.CATOptionPanel
 
CATProductCompartment - Class in lerfob.carbonbalancetool
This method takes in charge the evolution of the carbon in the wood products
CATProductCompartment(CATCompartmentManager, CATCompartment.CompartmentInfo) - Constructor for class lerfob.carbonbalancetool.CATProductCompartment
Constructor.
CATScenarioComparisonDialog - Class in lerfob.carbonbalancetool
 
CATScenarioComparisonDialog(CATFrame, CATPanelView) - Constructor for class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
CATSensitivityAnalysisParameter<E extends Estimate> - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATSensitivityAnalysisParameter(boolean) - Constructor for class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameter
 
CATSensitivityAnalysisParameterWrapper - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATSensitivityAnalysisParameterWrapper(CATSensitivityAnalysisSettings.VariabilitySource) - Constructor for class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
CATSensitivityAnalysisSettings - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATSensitivityAnalysisSettings.VariabilitySource - Enum in lerfob.carbonbalancetool.sensitivityanalysis
 
CATSensitivityAnalysisSettingsDlg - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATSensitivityAnalysisSettingsDlg(CATSensitivityAnalysisSettings, Window) - Constructor for class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
CATSettings - Class in lerfob.carbonbalancetool
The CarbonAccountingToolSettings class handles the production lines, the wood piece dispatcher and the biomass parameters.
CATSettings(SettingMemory) - Constructor for class lerfob.carbonbalancetool.CATSettings
Constructor.
CATSettings.AssessmentReport - Enum in lerfob.carbonbalancetool
 
CATSettings.CATSpecies - Enum in lerfob.carbonbalancetool
The enum representing the species.
CATSettings.GWP - Class in lerfob.carbonbalancetool
 
CATSimulationDifference - Class in lerfob.carbonbalancetool
The CarbonAssessmentToolSimulationDifference class handles differences between two scenarios and provides the results.
CATSimulationResult - Interface in lerfob.carbonbalancetool
The CarbonAssessmentToolSimulationResult interface ensures the object can provide the results of a carbon simulation.
CATSpeciesSelectionDialog - Class in lerfob.carbonbalancetool.io
 
CATSpeciesSelectionDialog(Window) - Constructor for class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
CATTask - Class in lerfob.carbonbalancetool
 
CATTask(CATTask.Task, CarbonAccountingTool) - Constructor for class lerfob.carbonbalancetool.CATTask
 
CATTask.SetProperRealizationTask - Class in lerfob.carbonbalancetool
 
CATTask.Task - Enum in lerfob.carbonbalancetool
This enum defines the different tasks performed by the InternalSwingWorker class.
CATTimeTable - Class in lerfob.carbonbalancetool
 
CATTimeTable(int, int) - Constructor for class lerfob.carbonbalancetool.CATTimeTable
 
CATUniformSensitivityAnalysisParameter - Class in lerfob.carbonbalancetool.sensitivityanalysis
 
CATUniformSensitivityAnalysisParameter(double) - Constructor for class lerfob.carbonbalancetool.sensitivityanalysis.CATUniformSensitivityAnalysisParameter
 
CATUseClassSpeciesAmountMap(List<String>) - Constructor for class lerfob.carbonbalancetool.CATUtilityMaps.CATUseClassSpeciesAmountMap
 
CATUtility - Class in lerfob.carbonbalancetool
 
CATUtility() - Constructor for class lerfob.carbonbalancetool.CATUtility
 
CATUtility.BiomassParametersName - Enum in lerfob.carbonbalancetool
 
CATUtility.CarbonToolSettingsVector<E extends CATUtility.ParameterWrapper<?>> - Class in lerfob.carbonbalancetool
 
CATUtility.ParameterWrapper<P> - Interface in lerfob.carbonbalancetool
 
CATUtility.ProductionManagerName - Enum in lerfob.carbonbalancetool
 
CATUtility.ProductionProcessorManagerWrapper - Class in lerfob.carbonbalancetool
 
CATUtilityMaps - Class in lerfob.carbonbalancetool
This class contains map of different sorts which handle the results of the simulations.
CATUtilityMaps() - Constructor for class lerfob.carbonbalancetool.CATUtilityMaps
 
CATUtilityMaps.CATSpeciesAmountMap - Class in lerfob.carbonbalancetool
A Map with
1st key the species names
values AmountMap instances
CATUtilityMaps.CATUseClassSpeciesAmountMap - Class in lerfob.carbonbalancetool
A Map with
1st key UseClass instances
2nd key the species names
values AmountMap instances
CATUtilityMaps.MonteCarloEstimateMap - Class in lerfob.carbonbalancetool
A Map with
1st key Element instances
values MonteCarloEstimate instances
CATUtilityMaps.SpeciesMonteCarloEstimateMap - Class in lerfob.carbonbalancetool
A Map with
1st key the species name
2nd key Element instances
values MonteCarloEstimate instances
CATUtilityMaps.UseClassSpeciesMonteCarloEstimateMap - Class in lerfob.carbonbalancetool
A Map with
1st key UseClass instances
2nd key the species name
3rd key the Element instances
values MonteCarloEstimate instances
CATYieldTableRecordReader - Class in lerfob.carbonbalancetool.io
 
CATYieldTableRecordReader(CATSettings.CATSpecies) - Constructor for class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
General constructor.
CATYieldTableRecordReader.CATYieldTableFieldID - Enum in lerfob.carbonbalancetool.io
 
CATYieldTableRecordReader.CATYieldTableFieldLevel - Enum in lerfob.carbonbalancetool.io
 
CATYieldTableRecordReader.MessageID - Enum in lerfob.carbonbalancetool.io
 
CenteredGaussianDistribution - Class in repicea.stats.distributions
The CenteredGaussianDistribution class is designed for dealing with univariate or multivariate error terms in linear and non linear model.
CenteredGaussianDistribution(Matrix, double, StatisticalUtility.TypeMatrixR) - Constructor for class repicea.stats.distributions.CenteredGaussianDistribution
General constructor.
CenteredGaussianDistribution(Matrix) - Constructor for class repicea.stats.distributions.CenteredGaussianDistribution
Constructor for univariate distribution.
CentralMomentsGettable - Interface in repicea.stats
The CentralMomentsGettable interface ensures the mean and the variance are available.
CentralMomentsSettable - Interface in repicea.stats
The CentralMomentsSettable interface ensures the mean and the variance can be set.
CH4_C_FACTOR - Static variable in class lerfob.carbonbalancetool.CATSettings
 
checkAvailableMemory() - Static method in class repicea.lang.MemoryWatchDog
Checks if the available memory is still above the threshold is used.
checkEnabledFeatures(boolean) - Method in class repicea.console.MainDialog
 
checkFields() - Method in class repicea.io.tools.ImportFieldManager
 
checkFileValidity() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
This method checks if the filename is valid.
checkFileValidity() - Method in class repicea.io.tools.REpiceaExportToolDialog
This method checks if the filename is valid.
checkForEndlessLoops() - Method in class repicea.simulation.processsystem.SystemManager
 
checkInputFieldsFormat(Object[]) - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
 
checkInputFieldsFormat(Object[]) - Method in class repicea.io.tools.REpiceaRecordReader
This method checks if the input values of the current record are of the appropriate format.
checkInputFieldsValue(Object[], Enum<?>) - Method in class repicea.io.tools.REpiceaRecordReader
 
checkUsedMemory() - Static method in class repicea.lang.MemoryWatchDog
Checks the memory that is currently used.
ChiSquaredDistribution - Class in repicea.stats.distributions
The ChiSquareDistribution class represents a univariate Chi Square distribution with a given degrees of freedom.
ChiSquaredDistribution(int, double) - Constructor for class repicea.stats.distributions.ChiSquaredDistribution
Constructor for univariate Chi-squared distribution.
ChiSquaredDistribution(int, Matrix) - Constructor for class repicea.stats.distributions.ChiSquaredDistribution
Constructor for multivariate Chi-squared distribution (Wishart distribution).
clear() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitMap
 
clear() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
clear() - Method in class repicea.app.Logger
This method clears the JTextArea.
clear() - Method in class repicea.math.FastArrayList
 
clear() - Method in class repicea.util.Index
 
clientQueue - Variable in class repicea.net.server.AbstractServer
 
ClientThread - Class in repicea.net.server
 
ClientThread(AbstractServer, int) - Constructor for class repicea.net.server.ClientThread
Public constructor.
ClientThreadPanel - Class in repicea.net.server.gui
This private class is the GUI interface of the ClientThread class.
ClientThreadPanel(int) - Constructor for class repicea.net.server.gui.ClientThreadPanel
 
clone() - Method in class lerfob.carbonbalancetool.CATUtilityMaps.CATSpeciesAmountMap
 
clone() - Method in class repicea.io.GExportFieldDetails
 
clone() - Method in class repicea.io.GExportRecord
This method provides a deep clone of the record.
clone() - Method in class repicea.io.RelativePathFile
This method returns a deep clone of the RelativePathFile.
clone() - Method in class repicea.simulation.processsystem.AmountMap
 
cloneThisObject(MemorizerPackage) - Method in class repicea.serial.cloner.BasicSerialCloner
 
cloneThisObject(P) - Method in interface repicea.serial.cloner.SerialCloner
This method produces a deep clone of the object.
cloneThisObject(P) - Method in class repicea.serial.cloner.XmlSerialCloner
 
close() - Method in class repicea.app.SettingMemory
 
close() - Method in class repicea.io.javacsv.CSVReader
 
close() - Method in class repicea.io.javacsv.CSVWriter
 
close() - Method in class repicea.io.javadbf.DBFReader
 
close() - Method in class repicea.io.javadbf.DBFWriter
 
close() - Method in class repicea.io.javasql.SQLReader
 
close() - Method in class repicea.io.javasql.SQLWriter
 
close() - Method in class repicea.net.RemoteEventManager
 
close() - Method in class repicea.net.server.BasicClient
This method sends a request to the server to close the connection and closes the output and input streams.
close() - Method in class repicea.net.TCPSocketWrapper
 
close() - Method in class repicea.net.UDPSocketWrapper
 
close - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
closeAllButton - Variable in class repicea.gui.components.REpiceaTabbedPane
 
closeAndRestartTheseThreads(Collection<ClientThread>) - Method in class repicea.net.server.AbstractServer
 
closeButton - Variable in class repicea.gui.components.REpiceaTabbedPane
 
closeOtherButton - Variable in class repicea.gui.components.REpiceaTabbedPane
 
closeSocket() - Method in class repicea.net.server.ClientThread
 
CmdProcess - Class in repicea.multiprocess
 
CmdProcess(List<String>, File) - Constructor for class repicea.multiprocess.CmdProcess
General constructor.
CmdProcess(List<String>) - Constructor for class repicea.multiprocess.CmdProcess
Sub constructor with the commands only.
CO2_C_FACTOR - Static variable in class lerfob.carbonbalancetool.CATSettings
 
columnNames - Variable in class repicea.gui.components.REpiceaMatchSelector
 
combineMatrices(Matrix, Matrix) - Static method in class repicea.stats.StatisticalUtility
This method combines two row vectors of dummy variables.
comboBox - Variable in class repicea.gui.components.REpiceaComboBoxOpenButton
 
comboBoxPanel - Variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
CombustionEmissions - Class in lerfob.carbonbalancetool.productionlines.combustion
The CombustionEmissions class handles the combustion factors provided by the LRGP in the SATAN research project (2015-2019).
CombustionEmissions(Object[]) - Constructor for class lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions
 
CombustionEmissions.CombustionProcess - Enum in lerfob.carbonbalancetool.productionlines.combustion
 
CombustionEmissionsMap - Static variable in class lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions
 
CommercialVolumeM3Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its commercial volume.
CommonGuiUtility - Class in repicea.gui
The CommonGuiUtility class includes static methods that facilitates the Gui management.
CommonGuiUtility() - Constructor for class repicea.gui.CommonGuiUtility
 
CommonGuiUtility.FileChooserOutput - Class in repicea.gui
This class provides the result of a file chooser dialog.
CommonUtility - Class in lerfob.windstormdamagemodels.awsmodel
This class implements static method that are used in Albrecht et al.'s wind storm model.
CommonUtility() - Constructor for class lerfob.windstormdamagemodels.awsmodel.CommonUtility
 
CommonUtility.AWSTreeComparator - Class in lerfob.windstormdamagemodels.awsmodel
 
compare(LifeCycleAnalysis) - Method in class lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis
Deprecated.
This method enables the comparison with another life cycle analysis.
compare(Object, Object) - Method in class lerfob.windstormdamagemodels.awsmodel.CommonUtility.AWSTreeComparator
 
compare(DbhCmProvider, DbhCmProvider) - Method in class repicea.simulation.allometrycalculator.DbhComparator
 
compare(HeightMProvider, HeightMProvider) - Method in class repicea.simulation.allometrycalculator.HeightComparator
 
compareTo(Object) - Method in class lerfob.carbonbalancetool.CATCompartment
 
compareTo(GeographicalCoordinatesGenerator.PlotCoordinates) - Method in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator.PlotCoordinates
 
compareTo(Object) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl
 
compareTo(File) - Method in class repicea.io.RelativePathFile
 
compareTo(Object) - Method in class repicea.simulation.stemtaper.StemTaperCrossSection
 
compareTo(Object) - Method in class repicea.stats.data.Observation
 
compareTo(GaussianErrorTerm) - Method in class repicea.stats.distributions.GaussianErrorTerm
 
compareTo(Object) - Method in class repicea.stats.integral.QuadratureNode
 
compareTo(Object) - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel.LikelihoodValue
 
compareTo(Object) - Method in class repicea.stats.model.glm.HosmerLemeshowTest.Couplet
 
CompartmentSelectionProperty - Static variable in class lerfob.carbonbalancetool.CATOptionPanel
 
CompleteFilename - Static variable in class lerfob.app.LERFOBJARSVNAppVersion
 
CompleteFilename - Static variable in class repicea.app.REpiceaJARSVNAppVersion
 
completeLLK - Variable in class repicea.stats.model.AbstractStatisticalModel
The complete model likelihood.
component - Variable in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
componentAdapter - Variable in class repicea.serial.REpiceaMemorizerHandler
 
componentHidden(ComponentEvent) - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
componentMoved(ComponentEvent) - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
componentResized(ComponentEvent) - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
componentShown(ComponentEvent) - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
CompositeLogLikelihood - Class in repicea.stats.model
 
CompositeLogLikelihood(IndividualLogLikelihood, Matrix, Matrix) - Constructor for class repicea.stats.model.CompositeLogLikelihood
 
CompositeSimpsonRule - Class in repicea.stats.integral
This class implements the Composite Simpson's rule.
CompositeSimpsonRule(int) - Constructor for class repicea.stats.integral.CompositeSimpsonRule
Constructor.
CompositeSimpsonRule(List<Double>) - Constructor for class repicea.stats.integral.CompositeSimpsonRule
Constructor 2.
computeDummyVariables(int, String) - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
computeProbabilityOfTotalDamage(AWSTree.AWSTreeSpecies) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method computes the probability of observing more than 75% of damage in the stand for a particular tree species.
computeProportionOfDamageIfNotTotallyDamaged(AWSTree.AWSTreeSpecies) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method computes the damage proportion from 0 to 75% for a particular tree species.
conditionToListenIsMet() - Method in class repicea.multiprocess.IndependentProcessIncomingCommunicationWorker
This method should return true if the thread has to keep listening to the input standard stream for some message.
ConfidenceInterval - Class in repicea.stats.estimates
 
ConfidenceInterval(Matrix, Matrix, double) - Constructor for class repicea.stats.estimates.ConfidenceInterval
 
confidenceIntervalSlider - Variable in class lerfob.carbonbalancetool.CATFrame
 
connect() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
connectListenerAndObject(Object, RemoteListener) - Method in class repicea.net.RemoteEventManager
This method should be used to match the objects and the listeners.
connectRemoteListeners() - Method in class repicea.net.RemoteEventManager
This method connects the remote listeners to the appropriate object.
connectRemoteListeners() - Method in class repicea.net.server.ServerSideRemoteEventConnector
 
connectToSystemOutputStream() - Method in class repicea.app.Logger
This method connects this instance to the System output streams (error and output).
constructMatrices(String) - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
constructMatrices(String) - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
constructMatrices(String) - Method in interface repicea.stats.data.StatisticalDataStructure
This method builds the matrices that are required to fit the model.
constructRMatrix(Matrix, double, double, StatisticalUtility.TypeMatrixR) - Static method in class repicea.stats.StatisticalUtility
Construct a within-subject correlation matrix using a variance parameter, a correlation parameter and a column vector of coordinates.
constructRMatrix(Matrix, double, double, double, StatisticalUtility.TypeMatrixR) - Static method in class repicea.stats.StatisticalUtility
Construct a within-subject correlation matrix using a rho parameter, a gamma parameter, a residual parameter and a column vector of coordinates.
contains(byte[], byte) - Static method in class repicea.io.javadbf.Utils
 
contains(T) - Method in class repicea.math.FastArrayList
 
contains(Object) - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
controlPanel - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
convergenceAchieved - Variable in class repicea.math.optimizer.AbstractOptimizer
 
convergenceCriterion - Variable in class repicea.math.optimizer.AbstractOptimizer
 
conversionFactor - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
convertArrayType(Object[], Class<?>) - Static method in class repicea.lang.reflect.ReflectUtility
This method is used to convert an array of particular class into an array of another class.
convertFilenameForLabel(String, int) - Static method in class repicea.gui.CommonGuiUtility
This method truncates a filename and keeps only the last characters whose length is set through the maxLength parameter.
convertFromListToVector(List<T>) - Static method in class repicea.util.ObjectUtility
This method converts a List of T instance into a Vector of the same instances
convertGExportFieldDetailsToFormatField(GExportFieldDetails) - Method in class repicea.io.FormatWriter
This method generates the appropriate FormatField given a GExportFieldDetails instance.
convertGExportFieldDetailsToFormatField(GExportFieldDetails) - Method in class repicea.io.javacsv.CSVWriter
 
convertGExportFieldDetailsToFormatField(GExportFieldDetails) - Method in class repicea.io.javadbf.DBFWriter
 
convertGExportFieldDetailsToFormatField(GExportFieldDetails) - Method in class repicea.io.javasql.SQLWriter
 
convertIntoAppropriateClass() - Method in interface repicea.serial.DeprecatedObject
This method is to be used to return the appropriate object.
convertIntoProcessorLinkLine() - Method in class lerfob.carbonbalancetool.productionlines.PreEndOfLifeLinkLine
 
convertIntoProcessorLinkLine() - Method in class repicea.simulation.processsystem.PreProcessorLinkLine
 
convertOriginalToRelative(Point) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertOriginalToRelative(Dimension) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertRelativeToOriginal(Point) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertRelativeToOriginal(Dimension) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertToOriginal(int) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertToRelative(int) - Static method in class repicea.simulation.processsystem.SystemLayout
 
convertToSpeciesMap(CarbonUnitList, List<String>) - Static method in class lerfob.carbonbalancetool.CATUtilityMaps
This method returns a Map with the species name as keys and the total amount map as values.
CopulaExpression - Class in repicea.stats.model.glm.copula
This class is a basic class for all the copula expressions contained in the CopulaLibrary class.
CopulaExpression(String) - Constructor for class repicea.stats.model.glm.copula.CopulaExpression
 
copulaExpression - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
CopulaLibrary - Class in repicea.stats.model.glm.copula
This class contains many different copula forms.
CopulaLibrary() - Constructor for class repicea.stats.model.glm.copula.CopulaLibrary
 
CopulaLibrary.DistanceLinkFunctionCopulaExpression - Class in repicea.stats.model.glm.copula
A copula based on a link function and the euclidian distance between the two observations.
CopulaLibrary.SimpleCopulaExpression - Class in repicea.stats.model.glm.copula
This copula is a simple copula with one constant parameter.
CopulaLibrary.SimpleLogisticCopulaExpression - Class in repicea.stats.model.glm.copula
This copula is a logistic copula with a single intercept parameter.
copy(String, String) - Static method in class repicea.io.FileUtility
This static method copy a source file over a target file
copyList(List) - Static method in class repicea.util.ObjectUtility
This method copies all the element of a List into a new ArrayList instance.
copyMap(Map) - Static method in class repicea.util.ObjectUtility
This method makes it possible to clone a Map type object
copySet(Set) - Static method in class repicea.util.ObjectUtility
 
copyVector(Vector) - Static method in class repicea.util.ObjectUtility
This method copies all the element of a vector into a new vector.
CorrelationEstimate - Class in repicea.stats.estimates
The CorrelationEstimate class represents a Pearson's correlation estimate.
CorrelationEstimate(double, int) - Constructor for class repicea.stats.estimates.CorrelationEstimate
Constructor.
Couplet(double, double) - Constructor for class repicea.stats.model.glm.HosmerLemeshowTest.Couplet
 
createAboutMenu() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
createAboutMenu() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
createButtonWithRedCircleIcon() - Static method in class repicea.gui.UIControlManager
This method returns a button with a red circle icon and no text.
createCarbonUnitFromAWoodPiece(int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
createClientThread(AbstractServer, int) - Method in class repicea.net.server.AbstractServer
 
createClientThread(AbstractServer, int) - Method in class repicea.net.server.JavaLocalGatewayServer
 
createCommonButton(UIControlManager.CommonControlID) - Static method in class repicea.gui.UIControlManager
This method creates a button corresponding to the buttonName parameter.
createCommonMenu(UIControlManager.CommonMenuTitle) - Static method in class repicea.gui.UIControlManager
This method creates a menu corresponding to the menuTitle parameter.
createCommonMenuItem(UIControlManager.CommonControlID) - Static method in class repicea.gui.UIControlManager
This method creates a menu item corresponding to the menuItemID parameter.
createCommonMenuItem(UIControlManager.CommonControlID, GenericTaskFactory) - Static method in class repicea.gui.UIControlManager
This method creates a menu item corresponding to the menuItemID parameter.
createDeepCopyOf(Object) - Static method in class repicea.serial.xml.XmlMarshallingUtilities
This method creates a deep clone of an object.
createDefaultTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
createDefaultTreeLoggerParameters() - Method in class repicea.simulation.treelogger.TreeLogger
This method returns a set of default parameters to make sure the logger can work.
createEditMenu() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
CreateEndOfLifeLinkButton(REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateEndOfLifeLinkButton
 
createEndOfLifeLinkRecognizer - Variable in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton
 
createExportTool() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method returns an export tool adapted to the carbon accounting tool.
createField(DataInput) - Static method in class repicea.io.javadbf.DBFField
Creates a DBFField object from the data read from the given DataInputStream.
createFileMenu() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
createFormatReader(String...) - Static method in class repicea.io.FormatReader
This method selects the appropriate FormatReader class.
createFormatWriter(boolean, String...) - Static method in class repicea.io.FormatWriter
This method selects the appropriate FormatWriter class.
createImportFieldManager(String, String...) - Static method in class repicea.io.tools.ImportFieldManager
This method returns an ImportFieldManager loaded from the filename parameter.
createIndependentProcess() - Method in class repicea.multiprocess.CmdProcess
 
createIndependentProcess() - Method in class repicea.multiprocess.JavaProcess
 
createInterface() - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
createInternalPanel() - Method in class repicea.gui.dnd.DnDPanel
 
createInternalPanel() - Method in class repicea.simulation.processsystem.SystemPanel
 
CreateLandfillProcessorButton(REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateLandfillProcessorButton
 
createLandfillSite(ProductionLineManager) - Static method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
createLeftInForestModel(ProductionLineManager) - Static method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
CreateLeftInForestProcessorButton(REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateLeftInForestProcessorButton
 
CreateLinkButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.ToolPanel.CreateLinkButton
 
createLinkRecognizer - Variable in class repicea.simulation.processsystem.ProcessorButton
 
createLogCategoriesForThisSpecies(Enum<?>) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
 
createNewFolder(File) - Method in class repicea.gui.ParentDrivenFileSystemView
 
createNewProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateLandfillProcessorButton
 
createNewProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateLeftInForestProcessorButton
 
createNewProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateProductionLineProcessorButton
 
createNewProcessor() - Method in class repicea.simulation.processsystem.DnDCompatibleButton
This method returns a Processor that is represented by the DnD button in the toolbar.
createNewProcessor() - Method in class repicea.simulation.processsystem.ToolPanel.CreateProcessorButton
 
createNumberFormatField(NumberFormatFieldFactory.Type, NumberFormatFieldFactory.Range, boolean) - Static method in class repicea.gui.components.NumberFormatFieldFactory
This method returns JFormattedNumericField instances with some bounds and number type (integer or double).
createNumberFormatField(int, NumberFormatFieldFactory.Type, NumberFormatFieldFactory.Range, boolean) - Static method in class repicea.gui.components.NumberFormatFieldFactory
This method returns JFormattedNumericField instances with some bounds and number type (integer or double).
CreateProcessorButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.ToolPanel.CreateProcessorButton
 
createProcessUnits(ProcessUnit, int) - Method in class repicea.simulation.processsystem.Processor
 
createProcessUnitsFromThisProcessor(ProcessUnit, int) - Method in class lerfob.carbonbalancetool.productionlines.AbstractProductionLineProcessor
 
createProcessUnitsFromThisProcessor(ProcessUnit, int) - Method in class lerfob.carbonbalancetool.productionlines.LandfillProcessor
 
createProcessUnitsFromThisProcessor(ProcessUnit, int) - Method in class lerfob.carbonbalancetool.productionlines.LeftInForestProcessor
 
createProcessUnitsFromThisProcessor(ProcessUnit, int) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
createProcessUnitsFromThisProcessor(ProcessUnit, int) - Method in class repicea.simulation.processsystem.Processor
 
createProcessWrapper() - Method in class repicea.console.Trigger
 
CreateProductionLineProcessorButton(REpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateProductionLineProcessorButton
 
createRecordSets() - Method in class repicea.io.tools.ExportTool
Deprecated.
This method creates the different record sets depending on the selected export options.
createRecordSets(List<Enum>) - Method in class repicea.io.tools.REpiceaExportTool
This method instantiates a InternalSwingWorkerForRecordSet-derived class, which handles the construction of the GRecordSet instance.
createRevisionFile(String, String) - Method in class repicea.app.AbstractAppVersionCompiler
 
createSelectAFilePanel(JTextField, JButton, JLabel) - Static method in class repicea.gui.CommonGuiUtility
 
createSimpleHorizontalPanel(Component, Component, int, boolean) - Static method in class repicea.gui.UIControlManager
This static method creates an horizontal JPanel with a label and a control.
createSimpleHorizontalPanel(REpiceaTranslator.TextableEnum, Component, int, boolean) - Static method in class repicea.gui.UIControlManager
This static method creates an horizontal JPanel with a label and a control.
createSimplePanel(Component, int) - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
createStemTaperSegmentList(List<Double>, boolean) - Static method in class repicea.simulation.stemtaper.StemTaperSegmentList
This static methods provides a list of StemTaperSegment instances embedded in a StemTaperSegmentList.
createSystemLayout() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
createSystemLayout() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
createSystemPanel() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
createSystemPanel() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
createTasks() - Method in interface repicea.app.GenericTaskFactory
This method returns a list of GenericTask instances.
createTransferable(JComponent) - Method in class repicea.gui.dnd.ReplaceTextTransferHandler
 
createTreeLoggerInstance() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns a TreeLogger instance adapted to these parameters.
createUI() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
createUI() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
createUI() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
createUI() - Method in class repicea.console.MainDialog
 
createUI() - Method in class repicea.simulation.processsystem.ToolPanel
 
createViewMenu() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
createViewport() - Method in class repicea.gui.components.REpiceaScrollPane
 
createZoomSlider() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
CrossSectionDiameterProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree object can provide the diameter of any cross section along its bole, typically through a stem taper model.
CrownBaseHeightProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its own crown base height.
CrownLengthMProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree can provide its own crown length (m).
CrownRadiusMProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree can provide its own crown radius (m).
CRUISE_LINE - Static variable in class repicea.simulation.HierarchicalLevel
 
CruiseLine(String, MonteCarloSimulationCompliantObject) - Constructor for class repicea.simulation.REpiceaPredictor.CruiseLine
 
CruiseLineProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This class ensures that the plot instance can provide its cruise line.
CSV - Static variable in class repicea.io.GFileFilter
 
CSVField - Class in repicea.io.javacsv
This class represents a field of a CSV file.
CSVField(String) - Constructor for class repicea.io.javacsv.CSVField
Constructor for a CSV field.
CSVHeader - Class in repicea.io.javacsv
This private class defines the header of a CSV file.
CSVHeader(String) - Constructor for class repicea.io.javacsv.CSVHeader
 
CSVHeader() - Constructor for class repicea.io.javacsv.CSVHeader
 
CSVReader - Class in repicea.io.javacsv
 
CSVReader(String) - Constructor for class repicea.io.javacsv.CSVReader
Constructor with default encoding
CSVReader(String, Charset) - Constructor for class repicea.io.javacsv.CSVReader
Constructor with specific encoding
CSVWriter - Class in repicea.io.javacsv
 
CSVWriter(File, boolean, String) - Constructor for class repicea.io.javacsv.CSVWriter
 
CSVWriter(File, boolean) - Constructor for class repicea.io.javacsv.CSVWriter
CSVWriter constructor using the default splitter ";".
currentBiomassParameters - Variable in class lerfob.carbonbalancetool.CATSettings
 
currentMemoryMenu - Variable in class repicea.console.MainDialog
 
currentProcessorManager - Variable in class lerfob.carbonbalancetool.CATSettings
 
cursorBeforeDragging - Variable in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
CustomizedREpiceaGUIPermission() - Constructor for class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.CustomizedREpiceaGUIPermission
 
CustomJList() - Constructor for class repicea.simulation.treelogger.TreeLoggerParametersDialog.CustomJList
 

D

data - Variable in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
DatabaseConnectionManager - Class in repicea.io.javasql
The DatabaseConnectionManager ensures that only one connection is made to a particular database.
DatabaseConnectionManager() - Constructor for class repicea.io.javasql.DatabaseConnectionManager
 
DataBlock - Class in repicea.stats.data
 
DataBlock(String, String) - Constructor for class repicea.stats.data.DataBlock
 
dataInputStream - Variable in class repicea.io.javadbf.DBFReader
 
DataSet - Class in repicea.stats.data
The DataSet class contains many observations and implements the method to read a dataset with a FormatReader instance.
DataSet(String) - Constructor for class repicea.stats.data.DataSet
 
DataSet(String, boolean) - Constructor for class repicea.stats.data.DataSet
General constructor.
DataSet(List<String>) - Constructor for class repicea.stats.data.DataSet
An empty dataset ready to be filled with observations.
dataSet - Variable in class repicea.stats.data.GenericStatisticalDataStructure
 
DataSet.ActionType - Enum in repicea.stats.data
 
dateYr - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
DateYrProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This method ensures the stand instance can provide the current year date.
DBF - Static variable in class repicea.io.GFileFilter
 
DBFException - Exception in repicea.io.javadbf
 
DBFException() - Constructor for exception repicea.io.javadbf.DBFException
 
DBFException(String) - Constructor for exception repicea.io.javadbf.DBFException
 
DBFField - Class in repicea.io.javadbf
DBFField represents a field specification in an dbf file.
DBFField() - Constructor for class repicea.io.javadbf.DBFField
 
DBFHeader - Class in repicea.io.javadbf
This private class defines the header of a DBF file.
DBFHeader() - Constructor for class repicea.io.javadbf.DBFHeader
 
DBFReader - Class in repicea.io.javadbf
DBFReader class can creates objects to represent DBF data.
DBFReader(String) - Constructor for class repicea.io.javadbf.DBFReader
Initializes a DBFReader object.
DBFWriter - Class in repicea.io.javadbf
An object of this class can create a DBF file.
DBFWriter() - Constructor for class repicea.io.javadbf.DBFWriter
Deprecated.
DBFWriter(File) - Constructor for class repicea.io.javadbf.DBFWriter
Deprecated.
The append option is automatically determined in this writer depending on whether the file exists. This feature is unsafe. The constructor with the append parameter is preferable to this one.
DBFWriter(File, boolean) - Constructor for class repicea.io.javadbf.DBFWriter
Creates a DBFWriter which can append to records to an existing DBF file.
dbhCm - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
DbhCmProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its own dbh.
DbhCmStandardDeviationProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures that the tree instance can provide the standard deviation of its dbh.
DbhComparator - Class in repicea.simulation.allometrycalculator
The DbhComparator class implements the Comparator interface for DbhCmProvider instances.
DbhComparator(boolean) - Constructor for class repicea.simulation.allometrycalculator.DbhComparator
General constructor.
DbhComparator() - Constructor for class repicea.simulation.allometrycalculator.DbhComparator
Default constructor for ascending comparison.
decideWhatToDoInCaseOfFailure(GenericTask) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
decideWhatToDoInCaseOfFailure(GenericTask) - Method in class repicea.app.AbstractGenericEngine
This method is called whenever an exception is thrown while running a task.
decideWhatToDoInCaseOfFailure(GenericTask) - Method in class repicea.console.Trigger
 
decomposeUsingToken(String, String) - Static method in class repicea.util.ObjectUtility
This method decomposes a String into a vector of String instances according to a particular token
DeepCloneable - Interface in repicea.util
This interface ensures the clone is a deep copy of the original instance.
DEFAULT_BETA_JUST_SET - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
DEFAULT_INDEX - Static variable in class repicea.simulation.ParameterMap
 
DEFAULT_RANDOM_EFFECT_AT_THIS_LEVEL_JUST_SET - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
DEFAULT_RESIDUAL_ERROR_JUST_SET - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
DefaultColor - Static variable in class repicea.simulation.processsystem.UISetup
 
DefaultLeftHandSideProcessors - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
DefaultREpiceaGUIPermission - Class in repicea.gui.permissions
 
DefaultREpiceaGUIPermission(boolean) - Constructor for class repicea.gui.permissions.DefaultREpiceaGUIPermission
 
DefaultStroke - Static variable in class repicea.simulation.processsystem.UISetup
 
DefaultZeroIndex - Static variable in class repicea.simulation.REpiceaPredictor
 
defineAvailableExportOptions() - Method in class lerfob.carbonbalancetool.io.CATExportTool
 
defineAvailableExportOptions() - Method in class repicea.io.tools.ExportTool
Deprecated.
This method sets the available export options.
defineAvailableExportOptions() - Method in class repicea.io.tools.REpiceaExportTool
This method sets the available export options.
defineFieldsToImport() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
defineFieldsToImport() - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
 
defineFieldsToImport() - Method in class repicea.io.tools.REpiceaRecordReader
This method defines the fields to be imported.
defineGroupFieldEnum() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
defineGroupFieldEnum() - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
 
defineGroupFieldEnum() - Method in class repicea.io.tools.REpiceaRecordReader
This method set the Enum var that corresponds to the group field.
degradableOrganicCarbonFractionSlider - Variable in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
DeprecatedObject - Interface in repicea.serial
This interface identifies the classes that are no longer in use.
DerivableMathematicalFunction - Interface in repicea.math
This interface returns the first and second derivatives of a mathematical function.
DerivableMatrixFunction<ParameterID> - Interface in repicea.math
This interface returns the first and second derivatives of a matrix function.
description - Variable in class repicea.io.tools.ImportFieldElement
 
deserializeFromRecords(List<List<Object>>) - Method in interface repicea.io.FormatCompliant
This method deserializes the records into the appropriate instances.
diagonalVector() - Method in class repicea.math.Matrix
This method return a vector that contains the diagonal element of this.
DiameterBasedTreeLogCategory - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLogCategory(Enum<?>, Object, double, double, double, boolean, DiameterBasedTreeLogCategory) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
General contructor.
DiameterBasedTreeLogCategory(Enum<?>, Object, double, boolean, DiameterBasedTreeLogCategory) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
A default constructor with 100% conversion factor and no downgrading.
DiameterBasedTreeLogCategory(Enum<?>, Object, double, DiameterBasedTreeLogCategory) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
A default constructor with 100% conversion factor, no downgrading and not from stump.
DiameterBasedTreeLogCategoryPanel - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLogCategoryPanel(DiameterBasedTreeLogCategory) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
DiameterBasedTreeLogCategoryPanel.MessageID - Enum in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLogger - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLogger() - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
DiameterBasedTreeLogger(boolean) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
Constructor for derived class.
DiameterBasedTreeLoggerParameters - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLoggerParameters(Class<? extends TreeLogger<?, ?>>) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
Constructor for derived classes
DiameterBasedTreeLoggerParameters() - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
Official constructor.
DiameterBasedTreeLoggerParameters.Grade - Enum in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLoggerParametersDialog - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedTreeLoggerParametersDialog(Window, DiameterBasedTreeLoggerParameters) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParametersDialog
 
DiameterBasedWoodPiece - Class in lerfob.treelogger.diameterbasedtreelogger
 
DiameterBasedWoodPiece(DiameterBasedTreeLogCategory, LoggableTree, boolean, double) - Constructor for class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedWoodPiece
Constructor.
disconnect() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
DisconnectAutoShutdown - Static variable in class repicea.gui.REpiceaAWTProperty
 
dispatchThisWoodPiece(String) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
This method produces a Map whose keys are the markets and values are the proportion of the wood piece that is sent to a particular market.
Dispersion - Static variable in class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
 
displayResult() - Method in class lerfob.carbonbalancetool.CATFrame
 
disposableProportionSlider - Variable in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
disposedToProcessor - Variable in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
distanceCalculated - Variable in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
distanceFields - Variable in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
distanceFieldsEnumeration - Variable in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
distanceIndex - Variable in class repicea.stats.distributions.GaussianErrorTerm
 
DistanceLinkFunctionCopulaExpression(LinkFunction.Type, String, String, double) - Constructor for class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
distanceMap - Variable in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
Distribution - Interface in repicea.stats
The Distribution interface provides the basic function for a probability density (or mass) function.
Distribution.Type - Enum in repicea.stats
 
DisturbanceAffectedProvider - Interface in repicea.simulation.disturbances
 
DisturbanceOccurrences - Class in repicea.simulation.disturbances
 
DisturbanceOccurrences(DisturbanceAffectedProvider, List<Integer>) - Constructor for class repicea.simulation.disturbances.DisturbanceOccurrences
Constructor for multiple occurrences
DisturbanceOccurrences(DisturbanceAffectedProvider) - Constructor for class repicea.simulation.disturbances.DisturbanceOccurrences
Basic constructor
DisturbanceOccurrences(DisturbanceAffectedProvider, int) - Constructor for class repicea.simulation.disturbances.DisturbanceOccurrences
Constructor for single occurrences
DisturbanceTypeProvider - Interface in repicea.simulation.disturbances
 
DisturbanceTypeProvider.DisturbanceType - Enum in repicea.simulation.disturbances
 
dndButtons - Variable in class repicea.simulation.processsystem.ToolPanel
 
DnDCompatibleButton - Class in repicea.simulation.processsystem
This interface ensures a DnDButton in the toolbar provides an appropriate format for the drag and drop.
DnDCompatibleButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.DnDCompatibleButton
 
DnDCompatibleButton.InternalDragGestureImpl - Class in repicea.simulation.processsystem
 
DnDPanel<D extends REpiceaUIObject> - Class in repicea.gui.dnd
The DnDPanel class handles the drop of any object of class P.
DnDPanel(ListManager<D>, Class<D>) - Constructor for class repicea.gui.dnd.DnDPanel
Constructor.
DnDPanel.InternalEmbeddingPanel - Class in repicea.gui.dnd
 
DnDPanel.InternalPanel - Class in repicea.gui.dnd
 
doBlupsExistForThisSubject(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
doesContainAnyNaN() - Method in class repicea.math.Matrix
This method returns true if the matrix contains at least one value NaN.
doesThisSubjectHaveResidualErrorTerm(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
doEstimation(StatisticalModel<? extends StatisticalDataStructure>) - Method in interface repicea.stats.estimators.Estimator
 
doEstimation(StatisticalModel<? extends StatisticalDataStructure>) - Method in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
doEstimation(StatisticalModel<? extends StatisticalDataStructure>) - Method in class repicea.stats.estimators.OLSEstimator
 
doEstimation() - Method in class repicea.stats.model.AbstractStatisticalModel
 
doEstimation() - Method in interface repicea.stats.model.StatisticalModel
This method computes the parameter estimates.
doInBackground() - Method in class repicea.app.AbstractGenericTask
Compared to the super class, the doInBackground() no longer throws exceptions.
doLinkAction() - Method in class repicea.simulation.processsystem.SystemPanel
 
DominantDiameterCmProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its own dominant diameter, ie.
DominantHeightMProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its own dominant height, ie.
done() - Method in class repicea.app.AbstractGenericTask
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.CATFrame
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
doNotListenToAnymore() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
doNotListenToAnymore() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
doNotListenToAnymore() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
doNotListenToAnymore() - Method in class repicea.console.MainDialog
 
doNotListenToAnymore() - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
doNotListenToAnymore() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
doNotListenToAnymore() - Method in class repicea.gui.components.REpiceaSlider
 
doNotListenToAnymore() - Method in class repicea.gui.components.REpiceaSliderGroup
 
doNotListenToAnymore() - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
doNotListenToAnymore() - Method in class repicea.gui.dnd.DnDPanel.InternalPanel
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
doNotListenToAnymore() - Method in class repicea.gui.genericwindows.REpiceaTipDialog
 
doNotListenToAnymore() - Method in class repicea.gui.REpiceaPanel
 
doNotListenToAnymore() - Method in interface repicea.gui.SynchronizedListening
This method remove the listeners.
doNotListenToAnymore() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
doNotListenToAnymore() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
doNotListenToAnymore() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
doNotListenToAnymore() - Method in class repicea.net.server.gui.ServerDialog
 
doNotListenToAnymore() - Method in class repicea.serial.REpiceaMemorizerHandler
 
doNotListenToAnymore() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
doNotListenToAnymore() - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
doNotListenToAnymore() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
doNotListenToAnymore() - Method in class repicea.simulation.processsystem.ToolPanel
 
doNotListenToAnymore() - Method in class repicea.simulation.treelogger.LogCategoryPanel
 
doNotListenToAnymore() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
DopalepDbhIncrementPredictor - Class in lerfob.predictor.dopalep
 
DopalepDbhIncrementPredictor(boolean, boolean, boolean) - Constructor for class lerfob.predictor.dopalep.DopalepDbhIncrementPredictor
 
DopalepPlot - Interface in lerfob.predictor.dopalep
 
DopalepTree - Interface in lerfob.predictor.dopalep
 
doProcess(List<ProcessUnit>) - Method in class lerfob.carbonbalancetool.productionlines.AbstractProcessor
 
doProcess(List<ProcessUnit>) - Method in class repicea.simulation.processsystem.Processor
 
doRandomDeviatesExistForThisSubject(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
doThisJob() - Method in class lerfob.carbonbalancetool.CATTask
 
doThisJob() - Method in class repicea.app.AbstractGenericTask
This method is the inner part of the doInBackground method.
doThisJob() - Method in class repicea.io.tools.REpiceaRecordReader.InternalTask
 
doThisJob() - Method in class repicea.multiprocess.JavaProcessWrapper
 
doThisJob() - Method in class repicea.net.server.ServerTask
 
doThisJob() - Method in class repicea.stats.data.DataSet
 
doubleFormating(Double, String, int, int) - Static method in class repicea.io.javadbf.Utils
 
DouglasFCBALoggableTree - Interface in lerfob.treelogger.douglasfirfcba
 
DouglasFCBALoggableTree.Species - Enum in lerfob.treelogger.douglasfirfcba
 
DouglasFCBATreeLogger - Class in lerfob.treelogger.douglasfirfcba
 
DouglasFCBATreeLogger() - Constructor for class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
DouglasFCBATreeLoggerParameters - Class in lerfob.treelogger.douglasfirfcba
 
DouglasFCBATreeLoggerParameters() - Constructor for class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
DouglasFCBATreeLoggerParameters.Grade - Enum in lerfob.treelogger.douglasfirfcba
 
downgradingProportion - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
downloadExamplesMenuItem - Variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
DragFromThisComponent - Static variable in class repicea.gui.dnd.DragGestureImpl
 
DragGestureButtonMoveHandler(ProcessorButton) - Constructor for class repicea.simulation.processsystem.ProcessorButton.DragGestureButtonMoveHandler
 
DragGestureCreateEndOfLifeLinkListener(ProcessorButton) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton.DragGestureCreateEndOfLifeLinkListener
 
DragGestureCreateLinkListener - Class in repicea.simulation.processsystem
 
DragGestureCreateLinkListener(ProcessorButton) - Constructor for class repicea.simulation.processsystem.DragGestureCreateLinkListener
 
DragGestureImpl<P> - Class in repicea.gui.dnd
The DragGestureImpl class handles the first step of the drag and drop procedure by creating a TransferableObject instance of class P.
DragGestureImpl() - Constructor for class repicea.gui.dnd.DragGestureImpl
 
DragGestureImpl(DragSourceListener, Image) - Constructor for class repicea.gui.dnd.DragGestureImpl
 
DragGestureMoveComponentHandler<C extends java.awt.Component> - Class in repicea.gui.dnd
The DragGestureMoveComponentHandler makes it possible to move the component in a panel.
DragGestureMoveComponentHandler(C) - Constructor for class repicea.gui.dnd.DragGestureMoveComponentHandler
 
dragGestureRecognized(DragGestureEvent) - Method in class repicea.gui.dnd.DragGestureImpl
 
dragGestureRecognized(DragGestureEvent) - Method in class repicea.simulation.processsystem.DragGestureCreateLinkListener
 
DrainageGroupProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that the stand object can provide its drainage group: xeric, mesic, subhydric or hydric.
DrainageGroupProvider.DrainageGroup - Enum in repicea.simulation.covariateproviders.plotlevel
 
draw(Graphics) - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
draw(Graphics) - Method in class repicea.simulation.processsystem.ProcessorLinkLine
 
drawRandomVector(int, Distribution.Type) - Static method in class repicea.stats.StatisticalUtility
This method generates a random vector
drawRandomVector(int, Distribution.Type, Random) - Static method in class repicea.stats.StatisticalUtility
This method generates a random vector
drawVerticalItem(Graphics2D, CategoryItemRendererState, Rectangle2D, CategoryPlot, CategoryAxis, ValueAxis, StatisticalCategoryDataset, int, int, int) - Method in class lerfob.carbonbalancetool.gui.EnhancedStatisticalBarRenderer
 
DrexhageAndColinRootBiomassPredictor - Class in lerfob.biomassmodel.drexhagecolin
This class implements two models for predicting the below ground dry biomass of oak and beech tree.
DrexhageAndColinRootBiomassPredictor() - Constructor for class lerfob.biomassmodel.drexhagecolin.DrexhageAndColinRootBiomassPredictor
 
drop(DropTargetDropEvent) - Method in class repicea.gui.dnd.DropTargetImpl
 
DropTargetImpl<P> - Class in repicea.gui.dnd
The DropTargetImpl class handles the drop during a drag and drop process.
DropTargetImpl(AcceptableDropComponent<P>, Class, int, List<Component>) - Constructor for class repicea.gui.dnd.DropTargetImpl
Constructor 1.
DropTargetImpl(AcceptableDropComponent<P>, Class, List<Component>) - Constructor for class repicea.gui.dnd.DropTargetImpl
Constructor 2.
DropTargetImpl(AcceptableDropComponent<P>, Class) - Constructor for class repicea.gui.dnd.DropTargetImpl
Constructor 3.
DropTargetImpl(AcceptableDropComponent<P>, Class, int) - Constructor for class repicea.gui.dnd.DropTargetImpl
Constructor 4.
dsl - Variable in class repicea.gui.dnd.DragGestureImpl
 

E

EcologicalRegionProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its ecological region code.
EcologicalTypeProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its ecological type code.
editingCanceled(ChangeEvent) - Method in class repicea.gui.components.REpiceaTableModel
 
editingStopped(ChangeEvent) - Method in class repicea.gui.components.REpiceaTableModel
 
elementWiseDivide(Matrix) - Method in class repicea.math.Matrix
This method compute the elementwise division of this / m
elementWiseMultiply(Matrix) - Method in class repicea.math.Matrix
This method compute the elementwise product of this x m
elementWiseMultiply(Matrix, Matrix) - Static method in class repicea.math.MatrixUtility
This method returns the element wise product of two matrices.
elementWisePower(double) - Method in class repicea.math.Matrix
This method computes the elements of the matrix at a given power.
ElevationMProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand object can provide its own elevation above sea level.
emissionsByFUField - Variable in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
emissionsByFunctionalUnit - Variable in class lerfob.carbonbalancetool.productionlines.AbstractProcessor
 
emissionsByFunctionUnit - Variable in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
EmpiricalDistribution - Class in repicea.stats.distributions
The EmpiricalDistribution class handles empirical distribution from observations or realizations.
EmpiricalDistribution() - Constructor for class repicea.stats.distributions.EmpiricalDistribution
Constructor.
emulateFertilityClass(FertilityClassEmulator.FertilityClass) - Method in interface lerfob.predictor.FertilityClassEmulator
This method allows to tweak the plot random effect in order to reproduce a sort of site index.
emulateFertilityClass(FertilityClassEmulator.FertilityClass) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
This method sets the fertility class.
emulateFertilityClass(FertilityClassEmulator.FertilityClass) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
 
emulateFertilityClass(FertilityClassEmulator.FertilityClass) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
This method sets the fertility class.
emulateFertilityClass(FertilityClassEmulator.FertilityClass) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
 
enableAllControls(Container, boolean) - Static method in class repicea.gui.CommonGuiUtility
This method is a recursive method that enables/disables all the controls, ie.
enableOnlyIfComparison(boolean) - Method in class lerfob.carbonbalancetool.CATOptionPanel
 
enableThoseComponents(Container, Class<? extends Component>, boolean) - Static method in class repicea.gui.CommonGuiUtility
This method is a recursive method that enables/disables all the buttons in a container.
encodingMenu - Variable in class repicea.console.MainDialog
 
EndOfLifeLinkLine - Class in lerfob.carbonbalancetool.productionlines
 
EndOfLifeLinkLine(SystemPanel, Processor, Processor) - Constructor for class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
EndOfLifeLinkLineStrokeBold - Static variable in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
EndOfLifeLinkLineStrokeDefault - Static variable in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
EndUseWoodProductCarbonUnit - Class in lerfob.carbonbalancetool.productionlines
A EndUseWoodProductCarbonUnit object results from a TreeLogger job.
EndUseWoodProductCarbonUnit(double, int, EndUseWoodProductCarbonUnitFeature, AmountMap<CarbonUnit.Element>, String) - Constructor for class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
Deprecated.
EndUseWoodProductCarbonUnit(int, String, EndUseWoodProductCarbonUnitFeature, AmountMap<CarbonUnit.Element>, String) - Constructor for class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
The constructor of this class.
EndUseWoodProductCarbonUnitFeature - Class in lerfob.carbonbalancetool.productionlines
An EndProductFeature instance contains four elements : a use class, a lifecycle analysis, a lifetime duration, and a substitution factor.
EndUseWoodProductCarbonUnitFeature(ProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
The empty constructor is handled by the interface.
EndUseWoodProductCarbonUnitFeature.UseClass - Enum in lerfob.carbonbalancetool.productionlines
 
EndUseWoodProductCarbonUnitFeaturePanel - Class in lerfob.carbonbalancetool.productionlines
The EndProductFeaturePanel class is the GUI interface of the EndProductFeature class.
EndUseWoodProductCarbonUnitFeaturePanel(EndUseWoodProductCarbonUnitFeature) - Constructor for class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
The constructor is linked to its representing class.
EndUseWoodProductCarbonUnitFeaturePanel.MessageID - Enum in lerfob.carbonbalancetool.productionlines
 
englishTitle - Static variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
EnhancedProcessorInternalDialog - Class in lerfob.carbonbalancetool.productionlines
 
EnhancedProcessorInternalDialog(Window, ProcessorButton) - Constructor for class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
EnhancedProcessorInternalDialog.MessageID - Enum in lerfob.carbonbalancetool.productionlines
 
EnhancedStatisticalBarRenderer - Class in lerfob.carbonbalancetool.gui
The EnhancedStatisticalBarRenderer class makes it possible to draw histograms with asymmetrical error bars.
EnhancedStatisticalBarRenderer() - Constructor for class lerfob.carbonbalancetool.gui.EnhancedStatisticalBarRenderer
 
enlarge - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
A carbon unit object is considered to be equal if it has the same creation date and the same carbon unit features.
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis
Deprecated.
 
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor
 
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
equals(Object) - Method in class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor
 
equals(Object) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
equals(Object) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
equals(Object) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
equals(Object) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
equals(Object) - Method in class repicea.math.Matrix
 
equals(Object) - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
equals(Object) - Method in class repicea.simulation.treelogger.LogCategory
 
equals(Object) - Method in class repicea.simulation.treelogger.TreeLoggerDescription
 
equals(Object) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
Estimate<D extends Distribution> - Class in repicea.stats.estimates
The Estimate class is the basic class for all estimates.
Estimate(D) - Constructor for class repicea.stats.estimates.Estimate
 
Estimate.EstimatorType - Enum in repicea.stats.estimates
The type of estimator.
estimatedParameterIndices - Variable in class repicea.simulation.ModelParameterEstimates
 
Estimator - Interface in repicea.stats.estimators
 
Estimator.EstimatorException - Exception in repicea.stats.estimators
The EstimatorException class encompasses all the exception that can be thrown when the optimizer fails to reach convergence.
EstimatorException(String) - Constructor for exception repicea.stats.estimators.Estimator.EstimatorException
 
estimatorType - Variable in class repicea.stats.estimates.Estimate
 
EuropeanBeechBasicTree - Interface in lerfob.treelogger.europeanbeech
 
EuropeanBeechBasicTreeLogCategory - Class in lerfob.treelogger.europeanbeech
 
EuropeanBeechBasicTreeLogCategory(EuropeanBeechBasicTreeLoggerParameters.Grade, Object, double) - Constructor for class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogCategory
Constructor.
EuropeanBeechBasicTreeLogger - Class in lerfob.treelogger.europeanbeech
 
EuropeanBeechBasicTreeLogger() - Constructor for class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogger
General constructor
EuropeanBeechBasicTreeLoggerParameters - Class in lerfob.treelogger.europeanbeech
 
EuropeanBeechBasicTreeLoggerParameters() - Constructor for class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters
 
EuropeanBeechBasicTreeLoggerParameters.Grade - Enum in lerfob.treelogger.europeanbeech
 
EvaluableFunction<P> - Interface in repicea.math
This interface ensures that the class can provide a value.
event - Variable in class repicea.util.AbstractEventExecutor
 
eventDispatched(AWTEvent) - Method in class repicea.gui.UIToolKit
Invoked when an event is dispatched in the AWT.
EventHandler(PropertyChangeEventGeneratingClass, PropertyChangeEvent) - Constructor for class repicea.util.PropertyChangeEventGeneratingClass.EventHandler
 
Executable - Interface in repicea.app
 
execute() - Method in interface repicea.multiprocess.IndependentProcess
This method starts the independent process.
ExpansionFactorProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its own expansion factor, i.e.
ExpectedMemoryCapacityException(String) - Constructor for exception repicea.lang.MemoryWatchDog.ExpectedMemoryCapacityException
 
expMatrix() - Method in class repicea.math.Matrix
Compute the exponential of the elements of this matrix.
ExponentialFunctionWrapper - Class in repicea.math
The LogFunctionWrapper class is a specific AbstractMathematicalFunctionWrapper for exp functions.
ExponentialFunctionWrapper(AbstractMathematicalFunction) - Constructor for class repicea.math.ExponentialFunctionWrapper
 
exportRecordSets() - Method in class lerfob.carbonbalancetool.io.CATExportTool
 
exportRecordSets() - Method in class repicea.io.tools.REpiceaExportTool
This method creates the different record sets depending on the selected export options.
ExportTool - Class in repicea.io.tools
Deprecated.
ExportTool(boolean) - Constructor for class repicea.io.tools.ExportTool
Deprecated.
General constructor.
ExportTool() - Constructor for class repicea.io.tools.ExportTool
Deprecated.
General constructor with multiple selection mode set to false.
ExportTool.FieldName - Enum in repicea.io.tools
Deprecated.
The FieldName enum class defines the field names during the export.
ExportTool.InternalSwingWorkerForRecordSet - Class in repicea.io.tools
Deprecated.
The abstract InternalSwingWorkerForRecordSet class is derived from the AbstractGenericTask class.
ExportToolDialog - Class in repicea.io.tools
Deprecated.
ExportToolDialog(ExportTool, Window) - Constructor for class repicea.io.tools.ExportToolDialog
Deprecated.
Constructor.
ExportToolDialog.MessageID - Enum in repicea.io.tools
Deprecated.
 
ExtendedFileFilter - Interface in repicea.util
This interface applies to FileFilter instance with known extensions.
ExtendedSystemLayout - Class in lerfob.carbonbalancetool.productionlines
 
ExtendedSystemLayout() - Constructor for class lerfob.carbonbalancetool.productionlines.ExtendedSystemLayout
 
ExtendedSystemPanel - Class in lerfob.carbonbalancetool.productionlines
 
ExtendedSystemPanel(SystemManager, SystemLayout) - Constructor for class lerfob.carbonbalancetool.productionlines.ExtendedSystemPanel
 
extractFromTree(LoggableTree, Object...) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogCategory
 
extractFromTree(LoggableTree, Object...) - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
extractFromTree(LoggableTree, Object...) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
extractFromTree(LoggableTree, Object...) - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogCategory
 
extractFromTree(LoggableTree, Object...) - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogCategory
 
extractFromTree(LoggableTree, Object...) - Method in class repicea.simulation.treelogger.LogCategory
This method returns a wood piece if it can be extract from the tree.
extractSequences(String, String, String) - Static method in class repicea.util.ObjectUtility
This method extracts substrings between particular sequences, typically between "(" and ")".
extractSubEstimate(List<Integer>) - Method in class repicea.stats.estimates.MonteCarloEstimate
This method returns a subset of the MonteCarloEstimate.

F

Factorial(int) - Static method in class repicea.math.MathUtility
This method returns the factorial of parameter i.
FactorialRatio(int, int) - Static method in class repicea.math.MathUtility
This method returns the ratio of two factorial factorial of parameter i.
FagaceesSpeciesProvider - Interface in lerfob.fagacees
This interface ensures the tree instance can provide its species in the Fagacees model, i.e.
FagaceesSpeciesProvider.FgSpecies - Enum in lerfob.fagacees
 
FastArrayList<T extends java.io.Serializable> - Class in repicea.math
The FastArrayList class is used by any AbstractMathematicalFunction-derived class.
FertilityClassEmulator - Interface in lerfob.predictor
This interface ensures the ModelBasedSimulator class can emulate fertility classes through plot random effects predictors.
FertilityClassEmulator.FertilityClass - Enum in lerfob.predictor
 
FGMCompositeLogLikelihood - Class in repicea.stats.model.glm.copula
 
FGMCompositeLogLikelihood(IndividualLogLikelihood, Matrix, Matrix, HierarchicalStatisticalDataStructure, CopulaExpression) - Constructor for class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
FGMCopulaGLModel - Class in repicea.stats.model.glm.copula
The FGMCopulaGLModel class implements a Farlie-Gumbel-Morgenstein (FGM) copula for binary outcomes.
FGMCopulaGLModel(GeneralizedLinearModel, CopulaExpression) - Constructor for class repicea.stats.model.glm.copula.FGMCopulaGLModel
Constructor for this class
FGMCopulaGLModel.LikelihoodValue - Class in repicea.stats.model.glm.copula
 
FIELD_TYPE_C - Static variable in class repicea.io.javadbf.DBFField
 
FIELD_TYPE_D - Static variable in class repicea.io.javadbf.DBFField
 
FIELD_TYPE_F - Static variable in class repicea.io.javadbf.DBFField
 
FIELD_TYPE_L - Static variable in class repicea.io.javadbf.DBFField
 
FIELD_TYPE_M - Static variable in class repicea.io.javadbf.DBFField
 
FIELD_TYPE_N - Static variable in class repicea.io.javadbf.DBFField
 
fieldID - Variable in class repicea.io.tools.ImportFieldElement
 
fieldListString - Variable in class repicea.io.javasql.SQLHeader
 
fieldNames - Variable in class repicea.stats.data.DataSet
 
fieldTypeClass - Variable in class repicea.io.tools.ImportFieldElement
 
fieldTypes - Variable in class repicea.stats.data.DataSet
 
FileChooserOutput(String, boolean) - Constructor for class repicea.gui.CommonGuiUtility.FileChooserOutput
 
filename - Variable in class repicea.app.SettingMemory
 
filename - Variable in class repicea.gui.components.REpiceaMatchSelector
 
filenameField - Variable in class repicea.io.tools.ExportToolDialog
Deprecated.
 
filenameField - Variable in class repicea.io.tools.REpiceaExportToolDialog
 
FileUtility - Class in repicea.io
This class just contains static methods that facilitates the handling of the files.
FileUtility() - Constructor for class repicea.io.FileUtility
 
filterList(Class<? extends CarbonUnit>, String, Object) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitList
This method filters the CarbonUnitList instance.
finalCutHadToBeCarriedOut - Variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
finalize() - Method in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
finalize() - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
finalize() - Method in class repicea.simulation.processsystem.PreProcessorLinkLine
 
finalize() - Method in class repicea.simulation.processsystem.ProcessorButton
 
finalize() - Method in class repicea.simulation.processsystem.ProcessorLinkLine
 
finalize() - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
finalTask - Variable in class repicea.app.AbstractGenericEngine
 
findCurrentLocation() - Method in class repicea.console.Trigger
 
findFirstParameterOfThisClass(Class<?>, Object...) - Static method in class repicea.simulation.REpiceaBinaryEventPredictor
This method scans the parameters and finds the first object that is an instance of this class.
findMatchingTreeLoggers(TreeLoggerCompatibilityCheck) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
findMatchingTreeLoggers(TreeLoggerCompatibilityCheck) - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
findMaxInAnArrayOfDouble(double[]) - Static method in class repicea.util.ObjectUtility
This static method finds the maximum value in a one-dimension array
findMinInAnArrayOfDouble(double[]) - Static method in class repicea.util.ObjectUtility
This static method finds the maximum value in a one-dimension array
fireCurrentStatus() - Method in class repicea.net.server.ClientThread
This method fires the current status of the worker
fireDesignerChangeEvent() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
fireDesignerChangeEvent() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
fireDesignerChangeEvent() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
fireEvent() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
Deprecated.
fireModelBasedSimulatorEvent(REpiceaPredictorEvent) - Method in class repicea.simulation.REpiceaPredictor
 
fireNumberFieldEvent(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class repicea.gui.components.NumberFormatFieldFactory.JFormattedNumericField
 
fireOptimizerEvent(String) - Method in class repicea.math.optimizer.AbstractOptimizer
 
firePropertyChange(REpiceaAWTProperty, Object, Object) - Method in class repicea.gui.REpiceaDialog
 
firePropertyChange(REpiceaAWTProperty, Object, Object) - Method in interface repicea.gui.REpiceaEventFireComponent
This method fires an event when the parameters are loaded or saved
firePropertyChange(REpiceaAWTProperty, Object, Object) - Method in class repicea.gui.REpiceaFrame
 
firePropertyChange(String, Object, Object) - Method in class repicea.net.server.AbstractServer
 
firePropertyChange(String, Object, Object) - Method in class repicea.net.server.ClientThread
 
firePropertyChange(String, Object, Object) - Method in class repicea.util.PropertyChangeEventGeneratingClass
This method serves to send a PropertyChangeEvent instance on the Event Dispatch Thread.
fireRandomEffectDeviateGeneratedEvent(MonteCarloSimulationCompliantObject, Estimate<? extends StandardGaussianDistribution>, Matrix) - Method in class repicea.simulation.REpiceaPredictor
 
fireTreeLoggerEvent(TreeLogger<?, ?>) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
firstTasksToDo() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
firstTasksToDo() - Method in class repicea.app.AbstractGenericEngine
This method sets the first tasks to execute when the engine starts.
firstTasksToDo() - Method in class repicea.console.Trigger
 
firstTasksToDo() - Method in class repicea.net.server.AbstractServer
 
firstTasksToDo() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
fixedEffectsPrediction(FrenchHDRelationship2014Stand, FrenchHDRelationship2014Tree, Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
This method computes the fixed effect prediction and put the prediction, the Z vector, and the species name into m_oRegressionOutput member.
fixedEffectsPrediction(FrenchHDRelationship2018Plot, FrenchHDRelationship2018Tree, Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
This method computes the fixed effect prediction and put the prediction, the Z vector, and the species name into m_oRegressionOutput member.
fixedEffectsPrediction(Stand, Tree, Matrix) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method computes the fixed effect prediction and put the prediction, the Z vector, and the species name into m_oRegressionOutput member.
fixedPred - Variable in class repicea.simulation.hdrelationships.HDRelationshipPredictor.RegressionElements
 
FixedSizeCopyOnWriteArrayList<E> - Class in repicea.util
 
FixedSizeCopyOnWriteArrayList(int) - Constructor for class repicea.util.FixedSizeCopyOnWriteArrayList
 
FixedSizeCopyOnWriteArrayList(Collection<? extends E>) - Constructor for class repicea.util.FixedSizeCopyOnWriteArrayList
 
FixedSizeCopyOnWriteArrayList(E[]) - Constructor for class repicea.util.FixedSizeCopyOnWriteArrayList
 
flush() - Method in class repicea.app.Logger
 
FormatCompliant - Interface in repicea.io
This interface ensures the instance can provides and deserialize a record set.
FormatField - Class in repicea.io
This class defines a basic field in a data set.
FormatField() - Constructor for class repicea.io.FormatField
 
FormatField(String) - Constructor for class repicea.io.FormatField
 
FormatField.NonAvailableFormatField - Class in repicea.io
 
FormatHeader<P extends FormatField> - Class in repicea.io
 
FormatHeader() - Constructor for class repicea.io.FormatHeader
 
FormatReader<H extends FormatHeader> - Class in repicea.io
Format reader is a general class for all the readers that exists (e.g.
FormatReader(String) - Constructor for class repicea.io.FormatReader
 
FormatWriter<H extends FormatHeader> - Class in repicea.io
Format reader is a general class for all the writers that exists (e.g.
FormatWriter() - Constructor for class repicea.io.FormatWriter
Deprecated.
Use constructor FormatWriter(File outputFile) instead
FormatWriter(File, boolean) - Constructor for class repicea.io.FormatWriter
 
formerImplementation - Variable in class lerfob.carbonbalancetool.CATSettings
 
FrenchCommercialVolume2014Predictor - Class in lerfob.predictor.volume.frenchcommercialvolume2014
The FrenchCommercialVolume2014Predictor class implements a model of volume for individual trees.
FrenchCommercialVolume2014Predictor(boolean) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Predictor
General constructor.
FrenchCommercialVolume2014Predictor() - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Predictor
Default constructor for deterministic mode.
FrenchCommercialVolume2014Tree - Interface in lerfob.predictor.volume.frenchcommercialvolume2014
 
FrenchCommercialVolume2014Tree.FrenchCommercialVolume2014TreeSpecies - Enum in lerfob.predictor.volume.frenchcommercialvolume2014
 
FrenchCommercialVolume2014TreeImpl - Class in lerfob.predictor.volume.frenchcommercialvolume2014
A basic implementation of the FrenchCommercialVolume2014Tree interface.
FrenchCommercialVolume2014TreeImpl(int, double, double, String, double) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
Protected constructor
FrenchCommercialVolume2014TreeImpl(int, double, double, String) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
Public constructor
FrenchCommercialVolume2020Predictor - Class in lerfob.predictor.volume.frenchcommercialvolume2020
The FrenchCommercialVolume2020Predictor class implements a model of volume for individual trees.
FrenchCommercialVolume2020Predictor(boolean) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
General constructor.
FrenchCommercialVolume2020Predictor() - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
Default constructor for deterministic mode.
FrenchCommercialVolume2020Tree - Interface in lerfob.predictor.volume.frenchcommercialvolume2020
Makes sure the tree can provide the information to run the volume model.
FrenchCommercialVolume2020Tree.FrenchCommercialVolume2020TreeSpecies - Enum in lerfob.predictor.volume.frenchcommercialvolume2020
 
FrenchCommercialVolume2020TreeImpl - Class in lerfob.predictor.volume.frenchcommercialvolume2020
A basic implementation of the FrenchCommercialVolume2020Tree interface.
FrenchCommercialVolume2020TreeImpl(int, double, double, String, double, double, double) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
Protected constructor
FrenchCommercialVolume2020TreeImpl(int, double, double, String) - Constructor for class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
Public constructor
FrenchDepartmentProvider - Interface in lerfob.simulation.covariateproviders.plotlevel
This interface ensures that the stand instance can provide its department.
FrenchDepartmentProvider.FrenchDepartment - Enum in lerfob.simulation.covariateproviders.plotlevel
 
FrenchDepartmentProvider.FrenchRegionPriorTo2016 - Enum in lerfob.simulation.covariateproviders.plotlevel
 
FrenchHDRelationship2014InternalPredictor - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014
 
FrenchHDRelationship2014InternalPredictor(boolean, boolean, boolean, FrenchHDRelationshipTree.FrenchHdSpecies) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
FrenchHDRelationship2014Predictor - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014
This class implements the general height-diameter relationships for the French National Forest Inventory.
FrenchHDRelationship2014Predictor(boolean) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
General constructor for all combinations of uncertainty sources.
FrenchHDRelationship2014Predictor() - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
Default constructor with all sources of uncertainty disabled.
FrenchHDRelationship2014Stand - Interface in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014
This interface ensures the compatibility between an instance representing a particular stand and the French general HD relationship.
FrenchHDRelationship2014Tree - Interface in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014
The HeightableTree interface ensures the compatibility with the French general HD relationship.
FrenchHDRelationship2018ClimateGenerator - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
The FrenchHDRelationship2018ClimateGenerator class implements a model of climate that provides the seasonal mean temperature and precipitation (e.g.
FrenchHDRelationship2018ExtPlot - Interface in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
The FrenchHDRelationship2018ExtStand interface is an extension of the FrenchHDRelationship2018Stand interface.
FrenchHDRelationship2018InternalPredictor - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
 
FrenchHDRelationship2018InternalPredictor(boolean, boolean, boolean, FrenchHDRelationshipTree.FrenchHdSpecies, FrenchHDRelationship2018Predictor) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
FrenchHDRelationship2018Plot - Interface in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
This interface ensures the compatibility between an instance representing a particular plot and the French general HD relationship.
FrenchHDRelationship2018PlotImpl - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
The FrenchHDRelationship2018PlotImpl class is a basic implementation of the FrenchHDRelationship2018Plot.
FrenchHDRelationship2018PlotImpl(String, double, double, double, boolean, int, double, int) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
Constructor.
FrenchHDRelationship2018PlotImpl(String, double, double, double, boolean, double, double, int) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
Constructor for French NFI.
FrenchHDRelationship2018Predictor - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
This class implements the general height-diameter relationships for the French National Forest Inventory.
FrenchHDRelationship2018Predictor(boolean) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
General constructor for all combinations of uncertainty sources.
FrenchHDRelationship2018Predictor() - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
Default constructor with all sources of uncertainty disabled.
FrenchHDRelationship2018Tree - Interface in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
The HeightableTree interface ensures the compatibility with the French general HD relationship.
FrenchHDRelationship2018TreeImpl - Class in lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
The FrenchHDRelationship2018TreeImpl class is a basic implementation of the FrenchHDRelationship2018Tree.
FrenchHDRelationship2018TreeImpl(int, double, double, Double, String, FrenchHDRelationship2018PlotImpl) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
Constructor.
FrenchHDRelationship2018TreeImpl(int, double, double, String, FrenchHDRelationship2018PlotImpl) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
Constructor for NFI data.
FrenchHDRelationship2018TreeImpl(double, String, FrenchHDRelationship2018PlotImpl) - Constructor for class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
Constructor for NFI data.
FrenchHDRelationshipTree - Interface in lerfob.predictor.hdrelationships
 
FrenchHDRelationshipTree.FrenchHdSpecies - Enum in lerfob.predictor.hdrelationships
 
FrenchHeightPredictor<Stand extends HDRelationshipStand,Tree extends HDRelationshipTree> - Interface in lerfob.predictor.hdrelationships
 
FrenchHeightPredictor.FrenchHeightPredictorVersion - Enum in lerfob.predictor.hdrelationships
 
FrenchNFIThinnerPlot - Interface in lerfob.predictor.thinners.frenchnfithinner2018
 
FrenchNFIThinnerPlotImpl - Class in lerfob.predictor.thinners.frenchnfithinner2018
Basic implementation of the FrenchNFIThinnerPlot interface.
FrenchNFIThinnerPlotImpl(String, String, double, double, double, boolean, double) - Constructor for class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
Constructor.
FrenchNFIThinnerPredictor - Class in lerfob.predictor.thinners.frenchnfithinner2018
This thinner is based on the NFI data for the remeasurement campaigns that took place from 2010 to 2016.
FrenchNFIThinnerPredictor(boolean, boolean) - Constructor for class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
Constructor.
FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies - Enum in lerfob.predictor.thinners.frenchnfithinner2018
 
FrenchRegion2016Provider - Interface in lerfob.simulation.covariateproviders.plotlevel
 
FrenchRegion2016Provider.FrenchRegion2016 - Enum in lerfob.simulation.covariateproviders.plotlevel
 
frenchTitle - Static variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
FullNameEnum - Interface in repicea.util
 
functionUnitBiomass - Variable in class lerfob.carbonbalancetool.productionlines.AbstractProcessor
 
functionUnitBiomass - Variable in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
futureLink - Variable in class repicea.simulation.processsystem.SystemPanel
 

G

gamma(double) - Static method in class repicea.math.GammaFunction
This method returns the result of the Gamma function.
GammaFunction - Class in repicea.math
This class implements the Gamma function.
GammaFunction() - Constructor for class repicea.math.GammaFunction
 
GaussHermiteQuadrature - Class in repicea.stats.integral
The GaussHermiteQuadrature class provides the x values and their weights for numerical integration.
GaussHermiteQuadrature(GaussQuadrature.NumberOfPoints) - Constructor for class repicea.stats.integral.GaussHermiteQuadrature
Constructor.
GaussHermiteQuadrature() - Constructor for class repicea.stats.integral.GaussHermiteQuadrature
Constructor.
GaussianDistribution - Class in repicea.stats.distributions
This class implements the Gaussian probability density function.
GaussianDistribution(Matrix, Matrix) - Constructor for class repicea.stats.distributions.GaussianDistribution
This constructor creates a Gaussian function with mean mu and variance sigma2.
GaussianErrorTerm - Class in repicea.stats.distributions
 
GaussianErrorTerm(GaussianErrorTermList.IndexableErrorTerm) - Constructor for class repicea.stats.distributions.GaussianErrorTerm
 
GaussianErrorTerm(GaussianErrorTermList.IndexableErrorTerm, double) - Constructor for class repicea.stats.distributions.GaussianErrorTerm
 
GaussianErrorTermEstimate - Class in repicea.stats.estimates
The GaussianErrorTermEstimate class handles the complex covariance structure in linear and nonlinear models.
GaussianErrorTermEstimate(Matrix, double, StatisticalUtility.TypeMatrixR) - Constructor for class repicea.stats.estimates.GaussianErrorTermEstimate
General constructor.
GaussianErrorTermEstimate(Matrix) - Constructor for class repicea.stats.estimates.GaussianErrorTermEstimate
Constructor for univariate distribution.
GaussianErrorTermForHeight(GaussianErrorTermList.IndexableErrorTerm, double, double) - Constructor for class repicea.simulation.hdrelationships.HDRelationshipPredictor.GaussianErrorTermForHeight
 
GaussianErrorTermList - Class in repicea.stats.distributions
 
GaussianErrorTermList() - Constructor for class repicea.stats.distributions.GaussianErrorTermList
 
GaussianErrorTermList.IndexableErrorTerm - Interface in repicea.stats.distributions
This interface ensures the instance can return an index that will serve as distance for the calculation of the variance-covariance matrix.
GaussianEstimate - Class in repicea.stats.estimates
This class contains the elements related to the random effects, i.e.
GaussianEstimate() - Constructor for class repicea.stats.estimates.GaussianEstimate
Common constructor.
GaussianEstimate(Matrix, Matrix) - Constructor for class repicea.stats.estimates.GaussianEstimate
Constructor with the mean and variance.
GaussianEstimate(double, double) - Constructor for class repicea.stats.estimates.GaussianEstimate
Constructor for univariate distribution.
GaussianUtility - Class in repicea.stats.distributions.utility
The Gaussian class implements common static methods that are related to the density or the cumulative probability of the Gaussian distribution.
GaussianUtility() - Constructor for class repicea.stats.distributions.utility.GaussianUtility
 
GaussLegendreQuadrature - Class in repicea.stats.integral
The GaussLegendreQuadrature class implements a numerical integration method based on Legendre polynomials.
GaussLegendreQuadrature(GaussQuadrature.NumberOfPoints) - Constructor for class repicea.stats.integral.GaussLegendreQuadrature
Constructor.
GaussQuadrature - Class in repicea.stats.integral
The GaussQuadrature class is the basic class for all the Gaussian quadrature methods, such as the Gauss-Hermite and the Gauss-Legendre quadrature.
GaussQuadrature() - Constructor for class repicea.stats.integral.GaussQuadrature
 
GaussQuadrature.NumberOfPoints - Enum in repicea.stats.integral
The enum NumberOfPoints defines the number of quadrature points.
GeneralizedLinearModel - Class in repicea.stats.model.glm
This class implements generalized linear models.
GeneralizedLinearModel(DataSet, LinkFunction.Type, String, Matrix) - Constructor for class repicea.stats.model.glm.GeneralizedLinearModel
General constructor
GeneralizedLinearModel(DataSet, LinkFunction.Type, String) - Constructor for class repicea.stats.model.glm.GeneralizedLinearModel
Constructor using a vector of 0s as starting values for the parameters
GeneralizedLinearModel(GeneralizedLinearModel) - Constructor for class repicea.stats.model.glm.GeneralizedLinearModel
Constructor for derived class.
GenericChooseFileDialog - Class in repicea.gui.genericwindows
The GenericChooseFileDialog class implements a simple dialog that allows the user to select either a file or a directory.
GenericChooseFileDialog(Window, String, String, String, int) - Constructor for class repicea.gui.genericwindows.GenericChooseFileDialog
Constructor with no file filters.
GenericChooseFileDialog(Window, String, String, String, List<FileFilter>, int) - Constructor for class repicea.gui.genericwindows.GenericChooseFileDialog
General constructor.
GenericHierarchicalSpatialDataStructure - Class in repicea.stats.data
This class is the basic class for a hierarchical and spatial data structure.
GenericHierarchicalSpatialDataStructure(DataSet) - Constructor for class repicea.stats.data.GenericHierarchicalSpatialDataStructure
General constructor.
GenericHierarchicalStatisticalDataStructure - Class in repicea.stats.data
This class is the basic class for hierarchical data structure.
GenericHierarchicalStatisticalDataStructure(DataSet) - Constructor for class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
General constructor.
GenericStatisticalDataStructure - Class in repicea.stats.data
The StatisticalDataStructure class is an abstract class that implements all the features to be able to fit a statistical model.
GenericStatisticalDataStructure(DataSet) - Constructor for class repicea.stats.data.GenericStatisticalDataStructure
General constructor.
GenericTask - Interface in repicea.app
GenericTask instances are used by the engine to perform any task.
GenericTaskFactory - Interface in repicea.app
The GenericTaskFactory interface ensures a particular instance can create its own task.
GeographicalCoordinatesGenerator - Class in lerfob.predictor.mathilde.climate
 
GeographicalCoordinatesGenerator.PlotCoordinates - Class in lerfob.predictor.mathilde.climate
 
GeographicalCoordinatesProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the plot instance can provide its geographical location.
get(int) - Method in class repicea.math.FastArrayList
 
get(int, int) - Method in class repicea.simulation.ParameterMap
This method returns a Matrix instance from the list of double that were stored in the map according to the two indices.
get(int) - Method in class repicea.simulation.ParameterMap
This method returns the same than get(index1, index2) in case of a single index implementation.
get() - Method in class repicea.simulation.ParameterMap
This method returns the same than get(index1, index2) in case of no index implementation.
getAboveGroundBiomassMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the aboveground biomass for a collection of trees.
getAboveGroundBiomassMg() - Method in interface lerfob.carbonbalancetool.CATAboveGroundBiomassProvider
This method returns the total above ground biomass (Mg), INCLUDING bark and WITHOUT expansion factor.
getAboveGroundCarbonMg(CATCompatibleTree, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the aboveground carbon of a particular tree (Mg), INCLUDING bark.
getAboveGroundCarbonMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the aboveground carbon for a collection of trees.
getAboveGroundCarbonMg() - Method in interface lerfob.carbonbalancetool.CATAboveGroundCarbonProvider
This method returns the aboveground carbon (Mg), INCLUDING bark and WITHOUT expansion factor.
getAboveGroundVolumeM3(CATCompatibleTree, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the aboveground volume of a particular tree (m3), INCLUDING bark.
getAboveGroundVolumeM3(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the aboveground volume for a collection of trees.
getAboveGroundVolumeM3() - Method in interface lerfob.carbonbalancetool.CATAboveGroundVolumeProvider
This method returns the total above ground volume (m3) , INCLUDING bark and WITHOUT any expansion factor.
getAbsoluteValue() - Method in class repicea.math.Matrix
This method returns a Matrix object that contains the absolute values of the original matrix.
getAdditionalElementConcentrations() - Method in interface lerfob.carbonbalancetool.CATAdditionalElementsProvider
This method returns a Map with the concentrations of additional elements (typically N, K, S, P).
getAdjugateMatrix() - Method in class repicea.math.Matrix
This method returns the adjugate matrix of this matrix.
getAgeYr() - Method in interface repicea.simulation.covariateproviders.plotlevel.AgeYrProvider
This method returns the age (yrs) of the stand.
getAlbrechtWindStormModelTrees() - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSStand
This methods makes the trees of the stand accessible.
getAlbrechtWindStormModelTrees() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getAllMathildeClimatePlots() - Method in interface lerfob.predictor.mathilde.climate.MathildeClimatePlot
This method returns all the plots of the sample so that it is possible to generate the blups with respect to the reference stands in the MathildeClimatePredictor class.
getAllocatedMemoryJVM() - Method in class repicea.console.TriggerSettings
 
getAmountMap() - Method in class repicea.simulation.processsystem.ProcessUnit
This method returns the quantities contained in this process unit.
getAngleBetweenObservations() - Method in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
getAngleBetweenObservations() - Method in interface repicea.stats.data.HierarchicalSpatialDataStructure
This method returns the angle map between the observations.
getAnglesBetweenObservations(int, int) - Method in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
getApplicationScale() - Method in interface repicea.simulation.ApplicationScaleProvider
This method returns the scale at which the model applies.
getArchitecture() - Method in class repicea.console.TriggerSettings
 
getAreaHa() - Method in interface repicea.simulation.covariateproviders.plotlevel.AreaHaProvider
This method returns the plot area in ha.
getAvailableExportOptions() - Method in class lerfob.carbonbalancetool.io.CATExportTool
 
getAvailableExportOptions() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
getAvailableExportOptions() - Method in class repicea.io.tools.REpiceaExportTool
 
getAvailableTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getAverageChangeOverThisPeriod(int, int, int, REpiceaClimateVariableMap.ClimateVariable) - Method in class repicea.simulation.climate.REpiceaClimateChangeTrend
Return the average change over a particular time interval with respect to a reference date.
getAverageDryBiomassByTree(double, double) - Static method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
getAverageIntake() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getAverageLifetime(MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
getAverageSubstitution() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
getAverageYield() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getAWSStandVariable(Enum) - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSStand
 
getAWSStandVariable(Enum) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getAWSTreatmentVariable(AWSTreatment.TreatmentVariable) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getAWSTreatmentVariable(AWSTreatment.TreatmentVariable) - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSTreatment
 
getAWSTreeVariable(Enum) - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSTree
 
getAWSTreeVariable(Enum) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl
 
getBarkProportionOfWoodVolume() - Method in interface lerfob.carbonbalancetool.CATCompatibleTree
 
getBarkProportionOfWoodVolume() - Method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
 
getBarkProportionOfWoodVolume() - Method in interface repicea.simulation.covariateproviders.treelevel.BarkProportionProvider
Returns the bark proportion with respect to the wood volume.
getBarkProportionOfWoodVolume() - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
getBarkVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the volume (m3) of this wood piece without any expansion factor.
getBasalAreaLargerThanSubjectM2Ha(MathildeTreeSpeciesProvider.MathildeTreeSpecies) - Method in interface lerfob.predictor.mathilde.MathildeTree
This method returns the basal area of all the trees of the species with dbh larger than this tree instance.
getBasalAreaLargerThanSubjectM2Ha() - Method in interface repicea.simulation.covariateproviders.treelevel.BasalAreaLargerThanSubjectM2Provider
This method returns the basal area of all the trees with dbh larger than this tree instance.
getBasalAreaM2() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getBasalAreaM2(Collection<? extends LightAllometryCalculableTree>) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method computes the basal area of a collection of trees.
getBasalAreaM2Ha() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getBasalAreaM2Ha() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getBasalAreaM2Ha() - Method in interface repicea.simulation.covariateproviders.plotlevel.BasalAreaM2HaProvider
This method returns the basal area of the stand in m2/ha.
getBasalAreaM2HaMinusThisSubject(HDRelationshipTree) - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Stand
This method returns the basal area per hectare minus the basal area of the tree.
getBasalAreaM2HaMinusThisSubject(HDRelationshipTree) - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Plot
This method returns the basal area per hectare minus the basal area of the tree.
getBasalAreaM2HaMinusThisSubject(HDRelationshipTree) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getBasalAreaM2HaOfThisSpecies(MathildeTreeSpeciesProvider.MathildeTreeSpecies) - Method in interface lerfob.predictor.mathilde.recruitment.MathildeRecruitmentStand
This method returns the basal area of a particular species in the stand.
getBasalAreaM2HaOtherTrees() - Method in interface lerfob.predictor.dopalep.DopalepTree
This method returns the basal area of the other trees.
getBasicDensity() - Method in enum lerfob.carbonbalancetool.CATBasicWoodDensityProvider.AverageBasicDensity
Deprecated.
 
getBasicWoodDensity() - Method in interface lerfob.carbonbalancetool.CATBasicWoodDensityProvider
This method returns the basic wood density calculated as the oven dry weight / green volume (e.g.
getBasicWoodDensity() - Method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
 
getBasicWoodDensity() - Method in interface repicea.simulation.covariateproviders.treelevel.BasicWoodDensityProvider
This method returns the basic wood density calculated as the oven dry weight / green volume (e.g.
getBasicWoodDensity() - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
getBasicWoodDensityFromThisTree(CATCompatibleTree, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the basic density factor for this tree.
getBelowGroundBiomassMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getBelowGroundBiomassMg() - Method in interface lerfob.carbonbalancetool.CATBelowGroundBiomassProvider
This method returns the dry belowground biomass (Mg), INCLUDING bark and WITHOUT expansion factor.
getBelowGroundCarbonMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getBelowGroundCarbonMg() - Method in interface lerfob.carbonbalancetool.CATBelowGroundCarbonProvider
This method returns the belowground carbon (Mg), INCLUDING bark and WITHOUT expansion factor.
getBelowGroundVolumeM3(CATCompatibleTree, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the belowground volume of a particular instance, INCLUDING bark and
getBelowGroundVolumeM3(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getBelowGroundVolumeM3() - Method in interface lerfob.carbonbalancetool.CATBelowGroundVolumeProvider
This method returns the belowground volume (m3), INCLUDING bark and WITHOUT expansion factor.
getBeta() - Method in class repicea.math.AbstractMathematicalFunction
This method returns the vector of parameters.
getBeta() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getBeta() - Method in class repicea.stats.model.CompositeLogLikelihood
 
getBeta() - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
getBinPath(Class) - Static method in class repicea.util.ObjectUtility
This method returns the path of a particular class.
getBiomassMgAtCreationDate() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the dry biomass of the product as it was created.
getBiomassOfFunctionalUnitMg() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getBivariateCumulativeProbability(double, double, double) - Static method in class repicea.stats.distributions.utility.GaussianUtility
This method returns the cumulative probability probability of a bivariate standard normal distribution for quantiles x1 and x2.
getBivariateCumulativeProbability(double, double, boolean, boolean, double) - Static method in class repicea.stats.distributions.utility.GaussianUtility
This method returns the cumulative probability or complementary probability of a bivariate standard normal distribution for quantiles x1 and x2.
getBlockConfiguration() - Method in class repicea.math.Matrix
This method returns a list of indices that defines the blocks in the matrix.
getBlocksOfThisLevel(String) - Method in class repicea.stats.data.DataBlock
This method returns the list of block corresponding to a particular hierarchical level.
getBlups(FrenchHDRelationship2014Stand, FrenchHDRelationship2014Tree) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
For testing purpose only
getBlups(FrenchHDRelationship2018Plot, FrenchHDRelationship2018Tree) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
For testing purpose only
getBlupsForThisSubject(FrenchHDRelationship2014Stand) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
getBlupsForThisSubject(FrenchHDRelationship2018Plot) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
getBlupsForThisSubject(Stand) - Method in interface lerfob.predictor.hdrelationships.FrenchHeightPredictor
Returns the estimated blups for the plot.
getBlupsForThisSubject(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getBlupsForThisSubject(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
getBlupsForThisSubject(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getBlupsForThisSubject(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
This method returns the blups for the subject or nothing if there is no blups for this subject
getBottomHeight() - Method in class repicea.simulation.stemtaper.StemTaperSegment
This method returns the height (m) of the lower cross section.
getBoundValue() - Method in class repicea.stats.distributions.BasicBound
 
getBudgetMap() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getBudgetMap() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the "rotation-averaged" carbon stocks in each compartment.
getBufferedImage() - Method in class lerfob.carbonbalancetool.CATFrame
 
getBufferedImage() - Method in class repicea.gui.REpiceaDialog
This method reads the image that serves as icon for the frame.
getBufferedImage() - Method in class repicea.gui.REpiceaFrame
This method reads the image that serves as icon for the frame.
getBuild() - Method in class repicea.app.AbstractAppVersion
This method returns the build.
getCalculatedCarbonArray() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getCaller() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
getCaller() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
getCaller() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
getCaller() - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
getCaller() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
getCaller() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
getCaller() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getCaller() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
getCaller() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
getCaller() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
getCaller() - Method in class repicea.simulation.processsystem.SystemManagerDialog
This method returns the SystemManager instance behind this dialog.
getCarbonCompartmentManager() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
getCarbonContentFromThisTree(CATCompatibleTree, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This method returns the carbon content ratio for this tree, INCLUDING bark.
getCarbonContentRatio() - Method in interface lerfob.carbonbalancetool.CATCarbonContentRatioProvider
This method returns the ratio tons of carbon - tons of dry biomass.
getCarbonEmissionPerM3() - Method in class lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis
Deprecated.
 
getCarbonEvolution(double) - Method in class lerfob.carbonbalancetool.CATCompartment
This method return a Matrix with the carbon stock per ha.
getCarbonToolSettings() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method returns the settings of the carbon accounting tool.
getCarbonToolSettings() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getCarbonToolSettings() - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
getCarbonUnitFeature() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
getCarbonUnitFeature() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
 
getCarbonUnitFeature() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnit
 
getCarbonUnitMap() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getCarbonUnits(CarbonUnit.CarbonUnitStatus) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method returns the CarbonUnitList instance that match the type of carbon.
getCarbonUnits(CarbonUnit.CarbonUnitStatus) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
This method returns the CarbonUnitList instance that match the type of carbon.
getCarbonUnitsArray() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getCATSpecies() - Method in interface lerfob.carbonbalancetool.CATCompatibleTree
This method returns the species of the tree.
getCATSpecies() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
getCATSpeciesFromThisString(String) - Static method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
This method returns the CATSpecies defined by the speciesName parameter.
getCdfValue() - Method in class repicea.stats.distributions.TruncatedGaussianDistribution.Bound
 
getCH4Factor() - Method in class lerfob.carbonbalancetool.CATSettings.GWP
This method returns the CO2 eq of the CH4 gas
getChangeFromTo(int, int, REpiceaClimateVariableMap.ClimateVariable) - Method in class repicea.simulation.climate.REpiceaClimateChangeTrend
Provides the change in the variable between the start and the end dates.
getCharactersetName() - Method in class repicea.io.javadbf.DBFReader
 
getCharactersetName() - Method in class repicea.io.javadbf.DBFWriter
 
getClassName(String) - Static method in class repicea.serial.xml.XmlMarshallingUtilities
This method returns the new class name if it has been changed.
getClassPathURLs() - Static method in class repicea.lang.REpiceaSystem
Provides the different URLs in the class path.
getClientThreads() - Method in class repicea.net.server.AbstractServer
This method returns the vector of client threads.
getClimateTrendForThisStand(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getClimateTrendForThisStand(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
getClimateTrendForThisStand(MonteCarloSimulationCompliantObject) - Method in interface repicea.simulation.climate.REpiceaClimateChangeGenerator
Returns Map of the annual changes for the different climate variable for a MonteCarloSimulationCompliantObject instance, typically a plot.
getClimateVariables(GeographicalCoordinatesProvider) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018ClimateGenerator
 
getClimateVariables(MathildeClimatePlot) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getClimateVariables(MathildeClimatePlot) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
getClimateVariables(P) - Method in interface repicea.simulation.climate.REpiceaClimateGenerator
Returns a map of climate variables depending on the geographical coordinates of the plot.
getCode() - Method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
This method returns the code of the department.
getCode() - Method in enum repicea.util.REpiceaTranslator.Language
This method returns the two-character code associated with the Language instance.
getCOFactor() - Method in class lerfob.carbonbalancetool.CATSettings.GWP
This method returns the CO2 eq of the CO gas
getCofactor(int, int) - Method in class repicea.math.Matrix
This method returns the cofactor of this matrix with respect to the element i,j.
getColor() - Method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
This method returns the color of the compartment for rendering.
getColor(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getColumnClass(int) - Method in class repicea.gui.components.REpiceaTableModel
 
getColumnCount() - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getColumnIndex(Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getColumnKey(int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getColumnKeys() - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getCombinations(int, int) - Static method in class repicea.stats.StatisticalUtility
This method returns the number of combinations.
getComboBox() - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
This method returns the JComboBox instance for adding listeners or other eventual changes.
getCombustionEmissionFactorsInCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Returns the combustion emission factors in CO2 eq.
getCombustionEmissionsArrayCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the emissions through out the lifetime of the end use wood product.
getCombustionProcess() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getCommercialBiomassMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getCommercialCarbonMg(Collection<CATCompatibleTree>, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getCommercialVolumeM3(Collection<CATCompatibleTree>) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getCommercialVolumeM3(Collection<? extends AllometryCalculableTree>) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method computes the commercial volume for a collection of commercial trees.
getCommercialVolumeM3() - Method in interface repicea.simulation.covariateproviders.treelevel.CommercialVolumeM3Provider
This method calculates the commercial volume, that is the volume from the stump up to a small-end diameter that defines the commercial limit.
getCompartmentID() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getCompartmentManager() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getCompartments() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getCompartmentToBeShown() - Method in class lerfob.carbonbalancetool.CATOptionPanel
This method iterates on the Setting map to find the compartment that are requested by the used
getCompatibleTreeLoggers(TreeLoggerCompatibilityCheck) - Method in class repicea.simulation.treelogger.TreeLoggerManager
This method returns the TreeLoggerDescription instances that are compatible with the reference object.
getCompleteLogLikelihood() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getCompleteLogLikelihood() - Method in interface repicea.stats.model.StatisticalModel
This method returns the model log-likelihood function.
getCompleteName() - Method in interface repicea.util.FullNameEnum
This method returns the complete name of the enum variable, i.e.
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.Estimate
This method returns the probability of getting a lower valueand upper bound of a confidence intervals at probability level 1 - alpha
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.GaussianErrorTermEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.GaussianEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.JackknifeEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.MonteCarloEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.PointEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.SimpleEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.TruncatedGaussianEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.UniformEstimate
 
getConfidenceIntervalBounds(double) - Method in class repicea.stats.estimates.VarianceEstimate
 
getConfiguration() - Method in class repicea.net.server.AbstractServer
 
getContent() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method returns a Collection of UserInterfaceableObject instances that are to be set in the different tabs of the dialog.
getContent() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
getContent() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
getControlPanel() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getControlPanel() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
getConvergenceCriterion() - Method in class repicea.math.optimizer.AbstractOptimizer
 
getConvergenceCriterion() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getConvergenceCriterion() - Method in interface repicea.stats.model.StatisticalModel
This method returns the value of the convergence criterion.
getCopula() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
getCreationDate() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns the creation date of the product
getCrossSectionDiameterCm(double, boolean) - Method in interface repicea.simulation.covariateproviders.treelevel.CrossSectionDiameterProvider
This method returns the diameter (cm) for a given cross section along the bole.
getCrossSectionHeights() - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
This method returns the heights of the cross sections for which the square diameters were predicted.
getCrownBaseHeightM() - Method in interface repicea.simulation.covariateproviders.treelevel.CrownBaseHeightProvider
This method returns the crown base height of the tree object.
getCrownLengthM() - Method in interface repicea.simulation.covariateproviders.treelevel.CrownLengthMProvider
This method returns the crown length (m).
getCrownRadiusM() - Method in interface repicea.simulation.covariateproviders.treelevel.CrownRadiusMProvider
This method returns the crown radius (m).
getCruiseLineForThisSubject(String, MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
This method checks if a cruise line exists for this plot
getCruiseLineID() - Method in interface repicea.simulation.covariateproviders.plotlevel.CruiseLineProvider
This method returns the cruise line ID.
getCumulativeProbability(double) - Static method in class repicea.stats.distributions.utility.GaussianUtility
This method returns the cumulative probability probability of a standard normal distribution for quantile x.
getCumulativeProbability(double, boolean) - Static method in class repicea.stats.distributions.utility.GaussianUtility
This method returns the cumulative probability or the complementary probability of a standard normal distribution for quantile x.
getCurrentBiomassParameters() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns the currently selected BiomassParameters instance.
getCurrentCarbonArray() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns an array that contains the current carbon (tC) or null if the carbon unit has not been actualized.
getCurrentCarbonSubstitution(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns an array that contains the substitution for specific lost volumes.
getCurrentLanguage() - Static method in class repicea.util.REpiceaTranslator
This method returns the current language of the UIControlManager.
getCurrentLogCategoryNames() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
getCurrentProductionProcessorManager() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns the currently selected ProductionProcessorManager instance.
getCurrentStatusMap() - Method in class repicea.net.server.ClientThread
 
getCurrentZoom() - Method in class repicea.simulation.processsystem.SystemLayout
 
getCustomizableBiomassParameters() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns the customizable biomass parameters manager.
getCustomizableProductionProcessorManager() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns the customizable production manager.
getCutPoint(AWSModelCore.SubModelID) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getDamagedTreesOfThisStand(AWSStand, AWSTreatment) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method returns a collection of damaged trees.
getData() - Method in class repicea.stats.sampling.PopulationUnit
This method returns the response that was observed in this unit of the population.
getDataSet() - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
getDataSet() - Method in interface repicea.stats.data.StatisticalDataStructure
This method returns the DataSet instance behind the StatisticalDataStructure.
getDataStructure() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getDataStructure() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
getDataStructure() - Method in interface repicea.stats.model.StatisticalModel
This method returns the data structure.
getDataStructureFromDataSet(DataSet) - Method in class repicea.stats.model.AbstractStatisticalModel
This method returns the appropriate StatisticalDataStructure from the dataSet.
getDataStructureFromDataSet(DataSet) - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
getDataStructureFromDataSet(DataSet) - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
getDataStructureFromDataSet(DataSet) - Method in class repicea.stats.model.lm.LinearModel
 
getDataType() - Method in class repicea.io.javadbf.DBFField
Returns the data type of the field.
getDateIndexForThisTree(CATCompatibleTree) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getDateYr() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getDateYr() - Method in interface repicea.simulation.covariateproviders.plotlevel.DateYrProvider
This method returns the current date in years.
getDbhCm() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getDbhCm() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getDbhCm() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getDbhCm() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl
 
getDbhCm() - Method in interface repicea.simulation.covariateproviders.treelevel.DbhCmProvider
This method returns the diameter at breast height of the tree.
getDbhCmStandardDeviation() - Method in interface repicea.simulation.covariateproviders.treelevel.DbhCmStandardDeviationProvider
This method returns the standard deviation of the DBH (cm)
getDecayFunction() - Method in class lerfob.carbonbalancetool.CATSettings
 
getDecayFunction() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getDecimalCount() - Method in class repicea.io.javadbf.DBFField
Returns the decimal part.
getDecimalNb() - Method in class repicea.io.GExportFieldDetails
 
getDeepClone() - Method in class repicea.math.Matrix
 
getDeepClone() - Method in interface repicea.util.DeepCloneable
This method returns a deep clone of the object.
getDefaultIcon() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel.CreateEndOfLifeLinkButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.DnDCompatibleButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.ProcessorButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.SelectableJButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.ToolPanel.CreateLinkButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.ToolPanel.CreateProcessorButton
 
getDefaultIcon() - Method in class repicea.simulation.processsystem.ToolPanel.MoveProcessorButton
 
getDefaultRandomEffects(HierarchicalLevel) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getDefaultRandomEffects() - Method in class repicea.simulation.REpiceaPredictor
 
getDefaultRandomEffects(HierarchicalLevel) - Method in class repicea.simulation.REpiceaPredictor
 
getDefaultResidualError(Enum<?>) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getDefaultResidualError(Enum<?>) - Method in class repicea.simulation.REpiceaPredictor
 
getDefaultSpecies() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
 
getDefaultSpecies() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
getDefaultSpecies() - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters
 
getDefaultSpecies() - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters
 
getDefaultSpecies() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method can be override in order to specify a default species.
getDefaultValues(AWSTree.AWSTreeSpecies) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables
This method returns a set of default values for a particular species.
getDegradableOrganicCarbonFraction() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
getDegreesOfFreedom() - Method in class repicea.stats.distributions.ChiSquaredDistribution
This method returns the degrees of freedom.
getDepartment(String) - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
This method retrieves the department enum variable given the code (typically "01" for AIN).
getDescription() - Method in class repicea.io.GFileFilter
 
getDescription() - Method in class repicea.simulation.treelogger.TreeLoggerParameters.TreeLoggerParametersFileFilter
 
getDeterminant() - Method in class repicea.math.Matrix
This method returns the determinant of this matrix using Laplace's method for small matrices and LU decomposition for larger matrices.
getDifferenceEstimate(Estimate<?>) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getDifferenceEstimate(Estimate<?>) - Method in class repicea.stats.estimates.Estimate
This method returns an difference estimate.
getDifferenceEstimate(Estimate<?>) - Method in class repicea.stats.estimates.MonteCarloEstimate
 
getDimensionRelativeToScreen(double, double) - Static method in class repicea.gui.UIControlManager
This method returns a Dimension instance whose width and height are the specified fraction of the screen dimension.
getDimensions(Object[]) - Static method in class repicea.lang.reflect.ReflectUtility
This method returns the dimensions of an array.
getDisposableProportion() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
getDistanceBetweenObservations(int, int) - Method in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
This method computes the Euclidian distance between two observations regardless of the dimensions.
getDistanceIndex() - Method in class repicea.stats.distributions.GaussianErrorTermList
 
getDistancesBetweenObservations() - Method in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
getDistancesBetweenObservations() - Method in interface repicea.stats.data.HierarchicalSpatialDataStructure
This method returns the distance map between the observations.
getDistribution() - Method in class repicea.stats.RandomVariable
This method returns the assumed distribution for the random variable.
getDisturbanceType() - Method in interface repicea.simulation.disturbances.DisturbanceTypeProvider
Returns the type of disturbance
getDominantDiameterCm() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getDominantDiameterCM(Collection<? extends AllometryCalculableTree>, double, boolean) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method returns the dominant diameter for the trees contained in the trees collection.
getDominantDiameterCm() - Method in interface repicea.simulation.covariateproviders.plotlevel.DominantDiameterCmProvider
This method returns the stand dominant diameter (cm)
getDominantHeightM() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getDominantHeightM(Collection<? extends AllometryCalculableTree>, double, boolean) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method returns the dominant height for the trees contained in the trees collection.
getDominantHeightM() - Method in interface repicea.simulation.covariateproviders.plotlevel.DominantHeightMProvider
This method returns the stand dominant height (m)
getDominantHeightOrDiameter(Collection<AWSTree>, double, boolean) - Static method in class lerfob.windstormdamagemodels.awsmodel.CommonUtility
This static method returns either the dominant height or the dominant diameter
getDominantSpecies() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getDrainageDummy() - Method in enum repicea.simulation.covariateproviders.plotlevel.DrainageGroupProvider.DrainageGroup
 
getDrainageGroup() - Method in interface repicea.simulation.covariateproviders.plotlevel.DrainageGroupProvider
This method returns the drainage group: xeric, mesic, subhydric or hydric.
getDummy() - Method in enum lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Tree.FrenchCommercialVolume2014TreeSpecies
 
getDummyMatrix(List, int) - Method in class repicea.stats.data.DataSet
 
getEcologicalType() - Method in interface repicea.simulation.covariateproviders.plotlevel.EcologicalTypeProvider
This method returns the ecological type code (4 characters) as defined by the Quebec Ministry of Natural Resources and Wildlife
getEcoRegion() - Method in interface repicea.simulation.covariateproviders.plotlevel.EcologicalRegionProvider
This method returns the ecological region type (2 characters) as defined by the Quebec Ministry of Natural Resouces and Wildlife
getElements(List<Integer>) - Method in class repicea.math.Matrix
This method returns the elements defined by the List indices in a row vector.
getElevationM() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getElevationM() - Method in interface repicea.simulation.covariateproviders.plotlevel.ElevationMProvider
This method returns the elevation above sea level (m).
getEligible(LoggableTree) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogger
 
getEligible(LoggableTree) - Method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
getEligible(LoggableTree) - Method in class repicea.simulation.treelogger.TreeLogger
This method determines whether or not the tree is eligible for this tree logger.
getEligibleTreesFromACollection(Collection<?>) - Method in class repicea.simulation.treelogger.TreeLogger
This method extracts a collection of TreePetroLoggable objects from a collection of LoggableTree instances.
getEmissionFactorInCO2EqForOneMgOfDryBiomass() - Method in class lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions
This method returns the total emissions in Mg of CO2 eq.
getEmissionsMgCO2ByFunctionalUnit() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getEncoding() - Method in class repicea.console.TriggerSettings
 
getEncodingName() - Method in enum repicea.console.TriggerSettings.Encoding
 
getEndDateYr() - Method in class repicea.simulation.climate.REpiceaClimateChangeTrend
Returns the last end date of the trend.
getEndProductFeature() - Method in class lerfob.carbonbalancetool.productionlines.AbstractProductionLineProcessor
 
getEndValue(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getEndValue(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getEnumName(String, String) - Static method in class repicea.serial.xml.XmlMarshallingUtilities
This method returns the new enum name if it has been changed.
getErrorForIndexableInstance(GaussianErrorTermList.IndexableErrorTerm) - Method in class repicea.stats.distributions.GaussianErrorTermList
 
getErrorGroup(Tree) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
 
getErrorTermIndex() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getErrorTermIndex() - Method in interface repicea.stats.distributions.GaussianErrorTermList.IndexableErrorTerm
This method returns the index of the error term.
getEstimate(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getEstimator() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getEstimator() - Method in interface repicea.stats.model.StatisticalModel
This method returns the optimizer of the log-likelihood function.
getEstimatorType() - Method in class repicea.stats.estimates.Estimate
This method returns the type of the estimator.
getEvent() - Method in class repicea.net.RemoteEvent
This method returns the embedded EventObject instance.
getEvolutionMap() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getEvolutionMap() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the carbon stock evolution in each compartment.
getExportOption() - Method in class repicea.io.tools.ExportTool.InternalSwingWorkerForRecordSet
Deprecated.
 
getExportOption() - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
getExtension() - Method in class repicea.io.GFileFilter
 
getExtension() - Method in class repicea.simulation.treelogger.TreeLoggerParameters.TreeLoggerParametersFileFilter
 
getExtension() - Method in interface repicea.util.ExtendedFileFilter
This method returns the extension of the file.
getFailureReason() - Method in class repicea.app.AbstractGenericTask
 
getFailureReason() - Method in interface repicea.app.Executable
This method returns the exception that has caused the task to terminate incorrectly.
getFailureReason() - Method in class repicea.simulation.treelogger.TreeLogger
 
getFalseZeroProbability(Matrix, MathildeRecruitmentStand, MathildeTreeSpeciesProvider.MathildeTreeSpecies) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
 
getFatherAnchor() - Method in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
getFatherAnchor() - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
getFatherAnchor() - Method in class repicea.simulation.processsystem.PreProcessorLinkLine
 
getFatherAnchor() - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
getFatherCompartment() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getFertilityClassMap() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
getFertilityClassMap() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
getFgSpecies() - Method in interface lerfob.fagacees.FagaceesSpeciesProvider
This method returns the FgSpecies enum that corresponds to the tree or the stand.
getField(int) - Method in class repicea.io.FormatHeader
This method returns the field contained at the specified index in the list of fields.
getField(int) - Method in class repicea.io.FormatReader
This method returns the field information provided by the header.
getField(int) - Method in class repicea.io.javadbf.DBFReader
Returns the asked Field.
getField(Enum) - Method in class repicea.io.tools.ImportFieldManager
This method returns the ImportFieldElement object corresponding to the FieldID parameter.
getFieldCount() - Method in class repicea.io.FormatReader
This method returns the number of fields of this file.
getFieldID() - Method in class repicea.io.tools.ImportFieldElement
This method returns the Enum variable who serves as ID for the field.
getFieldLength() - Method in class repicea.io.javadbf.DBFField
Returns field length.
getFieldLevel() - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.CATGrowthSimulationFieldID
 
getFieldLevel() - Method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.CATYieldTableFieldID
 
getFieldLevel() - Method in interface repicea.io.tools.LevelProviderEnum
This method returns an Enum that makes it possible to sort the fields according to their level.
getFieldList() - Method in class repicea.io.FormatHeader
This method returns the list of fields contained in the header.
getFieldList() - Method in class repicea.io.GExportRecord
This method provides the list of fields contained in this record.
getFieldListString() - Method in class repicea.io.javasql.SQLHeader
 
getFieldName() - Method in class repicea.io.tools.ImportFieldElement
 
getFieldNameList() - Method in class repicea.io.GExportRecord
This method returns the list of field names.
getFieldNames() - Method in class repicea.stats.data.DataSet
Returns the field names in a list.
getFields() - Method in class repicea.io.tools.ImportFieldManager
This method provides the vector of ImportFieldElement objects.
getFieldsToSave() - Method in interface repicea.io.FormatCompliant
This method returns the FormatField instances that serve to define the header of the file.
getFieldType() - Method in class repicea.io.tools.ImportFieldElement
This method returns the type of field which can be a String, a Double or an Integer.
getFieldTypeOfThisField(int) - Method in class repicea.stats.data.DataSet
 
getFieldTypeOfThisField(String) - Method in class repicea.stats.data.DataSet
 
getFieldTypes() - Method in class repicea.stats.data.DataSet
 
getFile() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
This method the file the users selected.
getFileFilter() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
getFileFilter() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getFileFilter() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
getFileFilter() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getFileFilter() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
getFileFilter() - Method in class repicea.gui.components.REpiceaMatchSelector
 
getFileFilter() - Method in enum repicea.io.GFileFilter.FileType
This method returns the GFileFilter instance associated with this FileType.
getFileFilter() - Method in interface repicea.io.IOUserInterfaceableObject
This method returns the appropriate FileFilter instance for this class.
getFileFilter() - Method in class repicea.io.tools.ImportFieldManager
 
getFileFilter() - Method in interface repicea.simulation.Parameterizable
Deprecated.
This method returns the appropriate FileFilter instance for this class.
getFileFilter() - Method in class repicea.simulation.processsystem.SystemManager
 
getFileFilter() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
getFileFilter() - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
getFileInAScrollPane() - Method in class repicea.gui.genericwindows.REpiceaGenericShowDialog
This method edits the html file into a scroll panel.
getFilename() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
getFilename() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getFilename() - Method in class repicea.gui.CommonGuiUtility.FileChooserOutput
This method returns the selected path.
getFilename() - Method in class repicea.gui.components.REpiceaMatchSelector
 
getFilename() - Method in class repicea.io.FormatReader
This method returns the name of the file this reader is supposed to read.
getFilename() - Method in class repicea.io.FormatWriter
This method returns the name of the output file.
getFilename() - Method in interface repicea.io.IOUserInterfaceableObject
This method returns the filename of the parameters.
getFilename() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
getFilename() - Method in class repicea.io.tools.ImportFieldManager
 
getFilename() - Method in class repicea.io.tools.REpiceaExportTool
 
getFilename() - Method in interface repicea.simulation.Parameterizable
Deprecated.
This method returns the filename of the parameters.
getFilename() - Method in class repicea.simulation.processsystem.SystemManager
 
getFilename() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
getFilename() - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
getFileSpecifications() - Method in class repicea.io.tools.ImportFieldManager
The file specification is an array of strings that first contains the filename.
getFileType() - Method in class repicea.io.GFileFilter
This method returns the file type associated with the file filter.
getFileType(String) - Static method in class repicea.io.GFileFilter
This static method returns the file type of a filename string
getFirstInstanceWithThisName(Enum<?>) - Method in class lerfob.carbonbalancetool.CATUtility.CarbonToolSettingsVector
 
getFixedEffectOnlyPrediction(DopalepPlot, DopalepTree) - Method in class lerfob.predictor.dopalep.DopalepDbhIncrementPredictor
 
getFixedEffectOnlyPrediction(MathildeDiameterIncrementStand, MathildeTree) - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
getFixedEffectOnlyPrediction(Matrix, MathildeDiameterIncrementStand, MathildeTree) - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
getFixedEffectOnlyPrediction(Matrix, MathildeMortalityStand, MathildeTree) - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
getFixedEffectOnlyPrediction(Matrix, MathildeThinningStand) - Method in class lerfob.predictor.mathilde.thinning.MathildeStandThinningPredictor
 
getFixedEffectOnlyPrediction(Matrix, MathildeThinningStand, MathildeTree) - Method in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
getFixedEffectOnlyPrediction(Matrix, MathildeThinningStand) - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeStandThinningPredictor
Deprecated.
 
getFixedEffectOnlyPrediction(Matrix, MathildeThinningStand, MathildeTree) - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
 
getFixedEffectPrediction(MathildeClimatePlot, Matrix) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getFixedEffectPrediction(MathildeClimatePlot) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getFixedEffectPrediction(MathildeClimatePlot, Matrix, Matrix) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
getFont(UIControlManager.FontType) - Static method in class repicea.gui.UIControlManager
This method returns the font associated to this FontType enum variable
getFormatFields() - Method in class repicea.io.tools.ImportFieldManager
 
getFormerRegion() - Method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
This method returns the region before 2016.
getFrenchCommercialVolume2014TreeSpecies() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getFrenchCommercialVolume2014TreeSpecies() - Method in interface lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Tree
This method returns the species of the tree instance.
getFrenchCommercialVolume2014TreeSpecies() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getFrenchCommercialVolume2020TreeSpecies() - Method in interface lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Tree
This method returns the species of the tree instance.
getFrenchCommercialVolume2020TreeSpecies() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getFrenchDepartment() - Method in interface lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider
This method returns the French department in which the stand instance is located.
getFrenchHdSpeciesFromThisString(String) - Static method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
getFrenchHDTreeSpecies() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Tree
This method ensures the species compatibility with the hd relationship.
getFrenchHDTreeSpecies() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Tree
This method ensures the species compatibility with the hd relationship.
getFrenchHDTreeSpecies() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getFrenchNFIThinnerSpeciesFromThisString(String) - Static method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method returns a FrenchNFIThinnerSpecies instance that matches the species name.
getFrenchRegion2016() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getFrenchRegion2016() - Method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
This method returns the new region as defined in 2016.
getFrenchRegion2016() - Method in interface lerfob.simulation.covariateproviders.plotlevel.FrenchRegion2016Provider
This method returns the region (version 2016) the plot is located in.
getFrenchRegion2016FromThisString(String) - Static method in interface lerfob.simulation.covariateproviders.plotlevel.FrenchRegion2016Provider
This method returns a FrenchRegion2016 instance that matches the region name.
getGaussianErrorTerms(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
getGlobalWarmingPotential() - Static method in class lerfob.carbonbalancetool.CATSettings
This method returns the Global Warming Potential according to the selected assessment report.
getGOther() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getGrade() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
getGradient() - Method in class lerfob.carbonbalancetool.CATExponentialFunction
 
getGradient() - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor.InternalMathematicalFunction
 
getGradient() - Method in class repicea.math.AbstractMathematicalFunction
 
getGradient() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getGradient() - Method in interface repicea.math.DerivableMathematicalFunction
This method returns a vector that contains the first derivatives of the function with respect to its parameters.
getGradient(ParameterID) - Method in interface repicea.math.DerivableMatrixFunction
This method returns a vector that contains the first derivatives of the function with respect to its parameters.
getGradient() - Method in class repicea.math.ExponentialFunctionWrapper
 
getGradient() - Method in class repicea.math.LogFunctionWrapper
 
getGradient() - Method in class repicea.stats.LinearStatisticalExpression
 
getGradient() - Method in class repicea.stats.model.CompositeLogLikelihood
 
getGradient() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
getGradient() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
 
getGradient() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
getGradient() - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
getGradient() - Method in class repicea.stats.model.glm.LikelihoodGLM
 
getGradient() - Method in class repicea.stats.model.glm.LinkFunction
 
getGroup() - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getGroupList() - Method in class repicea.io.tools.REpiceaRecordReader
This method returns a list of Strings that represents the groups.
getGroupMap() - Method in class repicea.io.tools.REpiceaRecordReader
This method returns the indices of all the observations according to their corresponding groups.
getGroupName(int) - Method in class repicea.io.tools.REpiceaRecordReader
This method returns the group name for this particular group ID.
getGrowthStepLengthYr() - Method in interface repicea.simulation.covariateproviders.plotlevel.GrowthStepLengthYrProvider
This method returns the growth step length in years.
getGuiInterface() - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method returns the GUI interface.
getGUIPermission() - Method in interface repicea.gui.permissions.REpiceaGUIPermissionProvider
This method returns the Permission instance associated with the object.
getGUIPermission() - Method in class repicea.simulation.processsystem.SystemManager
 
getGUIPermission() - Method in class repicea.simulation.processsystem.ToolPanel
 
getGUIPermission() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
getHarvestedCrownVolumeM3() - Method in interface lerfob.treelogger.maritimepine.MaritimePineBasicLoggableTree
This method returns the volume (m3) of fine wood debris harvested in the crown.
getHarvestedStand() - Method in interface lerfob.carbonbalancetool.CATCompatibleStand
This method returns a CarbonToolCompatibleStand with all its trees set to cut.
getHarvestedStumpVolumeM3() - Method in interface lerfob.treelogger.maritimepine.MaritimePineBasicLoggableTree
This method returns the volume (m3) of harvest stump and roots.
getHDRelationshipTreeErrorGroup() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getHDRelationshipTreeErrorGroup() - Method in interface repicea.simulation.hdrelationships.HDRelationshipTree
This method returns the error group in case of different error correlation structure.
getHeader() - Method in class repicea.io.FormatReader
This method returns the header of the file that is to be read.
getHeader() - Method in class repicea.io.FormatWriter
This method returns the header of the output file.
getHeatProductionArrayMgWh() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the emissions through out the lifetime of the end use wood product.
getHeatProductionEvolutionKWhPerHa() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getHeatProductionEvolutionKWhPerHa() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the heat production (KWh) for one ha.
getHeatProductionEvolutionMgWhHa(double) - Method in class lerfob.carbonbalancetool.CATProductCompartment
 
getHeatProductionInMgWhForOneMgOfDryBiomass() - Method in class lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions
This methods returns the total heat production in KWh for one Mg of dry biomass.
getHeatProductionMgWh() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Returns the heat production in MgWh for one Mg of dry biomass.
getHeightM() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getHeightM() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getHeightM() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getHeightM() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl
 
getHeightM() - Method in interface repicea.simulation.covariateproviders.treelevel.HeightMProvider
This method returns the tree height in m.
getHeights() - Method in class repicea.simulation.stemtaper.StemTaperSegmentList
This method returns a List of Double instance that corresponds to the heights (m) across all segments.
getHeightsToEvaluate() - Method in class repicea.simulation.stemtaper.StemTaperSegment
This method returns a List of Double that corresponds to the height for which the stem taper must be predicted.
getHeightsWithoutReplicates() - Method in class repicea.simulation.stemtaper.StemTaperSegmentList
This method returns a List of Double instance that corresponds to the heights (m) across all segments without replicates.
getHelper(Class<?>) - Static method in class repicea.gui.UIControlManager
This method returns the help method for this class.
getHessian() - Method in class lerfob.carbonbalancetool.CATExponentialFunction
 
getHessian() - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor.InternalMathematicalFunction
 
getHessian() - Method in class repicea.math.AbstractMathematicalFunction
 
getHessian() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getHessian() - Method in interface repicea.math.DerivableMathematicalFunction
This method returns a matrix that contains the second derivatives of the function with respect to its parameters.
getHessian(ParameterID, ParameterID) - Method in interface repicea.math.DerivableMatrixFunction
This method returns a matrix that contains the second derivatives of the matrix function with respect to its parameters.
getHessian() - Method in class repicea.math.ExponentialFunctionWrapper
 
getHessian() - Method in class repicea.math.LogFunctionWrapper
 
getHessian() - Method in class repicea.stats.LinearStatisticalExpression
 
getHessian() - Method in class repicea.stats.model.CompositeLogLikelihood
 
getHessian() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
getHessian() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
 
getHessian() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
getHessian() - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
getHessian() - Method in class repicea.stats.model.glm.LikelihoodGLM
 
getHessian() - Method in class repicea.stats.model.glm.LinkFunction
 
getHessianAtMaximum() - Method in class repicea.math.optimizer.AbstractOptimizer
 
getHierarchicalLevel() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getHierarchicalLevel() - Method in interface lerfob.predictor.dopalep.DopalepPlot
 
getHierarchicalLevel() - Method in interface lerfob.predictor.dopalep.DopalepTree
 
getHierarchicalLevel() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.climate.MathildeClimatePlot
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementStand
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.MathildeTree
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.mortality.MathildeMortalityStand
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.recruitment.MathildeRecruitmentStand
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.thinning.MathildeThinningStand
 
getHierarchicalLevel() - Method in interface lerfob.predictor.mathilde.thinningbeta.MathildeThinningStand
Deprecated.
 
getHierarchicalLevel() - Method in interface lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlot
 
getHierarchicalLevel() - Method in interface lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Tree
 
getHierarchicalLevel() - Method in interface lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Tree
 
getHierarchicalLevel() - Method in interface repicea.simulation.hdrelationships.HDRelationshipStand
 
getHierarchicalLevel() - Method in interface repicea.simulation.hdrelationships.HDRelationshipTree
 
getHierarchicalLevel() - Method in interface repicea.simulation.MonteCarloSimulationCompliantObject
This method returns the hierarchical levels of the object.
getHierarchicalLevel() - Method in class repicea.simulation.REpiceaPredictor.CruiseLine
 
getHierarchicalLevel() - Method in class repicea.simulation.REpiceaPredictor.IntervalNestedInPlotDefinition
 
getHierarchicalLevel() - Method in class repicea.stats.data.DataBlock
This method returns the hierarchical level of the data block.
getHierarchicalLevelSpecifications() - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
getHierarchicalStructure() - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
getHierarchicalStructure() - Method in interface repicea.stats.data.HierarchicalStatisticalDataStructure
This method returns the index of the observations by levels and id within the level.
getHierarchicalStructureLevel() - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
getHierarchicalStructureLevel() - Method in interface repicea.stats.data.HierarchicalStatisticalDataStructure
This method returns the list of the different levels of the hierarchical structure.
getHomeDirectory() - Method in class repicea.gui.ParentDrivenFileSystemView
 
getHWPContentByUseClassPerHa(boolean) - Method in class lerfob.carbonbalancetool.CATProductCompartment
This method returns the amount of nutrients per hectare (kg/ha) for each use class.
getHWPPerHaByUseClass() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getHWPPerHaByUseClass() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the amount of harvested wood products (HWPs) by use class and type (recycled, residues, etc...)
getHWPSummaryPerHa(boolean) - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getHWPSummaryPerHa(boolean) - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the summary of the HWP with or without recycling.
getIcon(UIControlManager.CommonControlID) - Static method in class repicea.gui.icons.IconFactory
This method returns the icon specified through the parameter.
getIcon() - Method in enum repicea.gui.UIControlManager.CommonControlID
 
getIcon() - Method in class repicea.simulation.processsystem.ProcessorButton
 
getIconFilename() - Method in enum repicea.gui.UIControlManager.CommonControlID
 
getId() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the identification of this piece.
getIdentityMatrix(int) - Static method in class repicea.math.Matrix
 
getIdentityMatrix(int) - Static method in class repicea.math.MatrixUtility
This method returns an identity matrix of size i.
getImportFieldManager() - Method in class repicea.io.tools.REpiceaRecordReader
 
getInclusionProbability() - Method in class repicea.stats.sampling.PopulationUnitWithUnequalInclusionProbability
This method returns the sampling probability of this population unit.
getIndex() - Method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
getIndex() - Method in class repicea.io.FormatField
This method returns the index of the field in the header.
getIndexIn2014() - Method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
getIndexInTimeScale() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns the index on the time scale at which the product has been created.
getIndexOfThisField(String) - Method in class repicea.io.FormatHeader
This method returns the index of a particular field.
getIndexOfThisField(Enum) - Method in class repicea.io.tools.ImportFieldManager
This method returns the index of the field within the vector of ImportFieldElement objects
getIndexOfThisField(String) - Method in class repicea.stats.data.DataSet
This method returns the index of a particular field.
getIndices() - Method in class repicea.stats.data.DataBlock
 
getInetAddress() - Method in interface repicea.net.SocketWrapper
This method returns the address of the socket that is bound to this socket.
getInetAddress() - Method in class repicea.net.TCPSocketWrapper
 
getInetAddress() - Method in class repicea.net.UDPSocketWrapper
 
getInfiniteIntegral() - Method in class lerfob.carbonbalancetool.CATDecayFunction
This method returns the value of the infinite integral of the decay function.
getInfiniteIntegral() - Method in class lerfob.carbonbalancetool.CATExponentialFunction
 
getInitialAgeYr() - Method in class lerfob.carbonbalancetool.CATTimeTable
 
getInitialCarbon() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns the carbon (tC) at the creation date.
getInitialVolumeBeforeFirstTransformation(double) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getInstance() - Static method in class lerfob.app.LERFOBJARSVNAppVersion
This method returns the singleton instance of REpiceaJARSVNAppVersion class which can be requested to return the revision number of this version.
getInstance() - Static method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method returns the singleton instance of the CATSensitivityAnalysisSettings class.
getInstance() - Static method in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator
 
getInstance() - Static method in class repicea.app.REpiceaJARSVNAppVersion
This method returns the singleton instance of this class which can be requested to return the revision number of this version.
getInstance() - Static method in class repicea.simulation.treelogger.TreeLoggerManager
 
getInstance() - Static method in class repicea.stats.distributions.StandardGaussianDistribution
This method returns the single instance of the StandardGaussianDistribution class.
getInstanceFromThisListener(EventListener) - Static method in class repicea.net.RemoteListener
This static method identifies and returns an instance from the appropriate RemoteListener derived class.
getIntegralApproximation(AbstractMathematicalFunction, List<Integer>, Matrix) - Method in class repicea.stats.integral.AdaptativeGaussHermiteQuadrature
This method returns the value of a multi-dimension integral
getIntegralApproximation(AbstractMathematicalFunction, List<Integer>, Matrix) - Method in class repicea.stats.integral.GaussHermiteQuadrature
This method returns the value of a multi-dimension integral
getIntegralApproximation(AbstractMathematicalFunction, List<Integer>, Matrix) - Method in class repicea.stats.integral.LaplacianApproximation
This method returns the value of a multi-dimension integral
getIntegratedCarbon() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getIntegratedCarbon(double) - Method in class lerfob.carbonbalancetool.CATCompartment
This method returns a random variable that contains the integrated carbon per ha.
getIntegratedCarbon(CATExponentialFunction, MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method calculates the average carbon by integrating the carbon contained in this product over its lifetime.
getInternalArray() - Method in class repicea.math.FastArrayList
 
getInternalInverseMatrix() - Method in class repicea.math.Matrix
 
getInternalProcess() - Method in class repicea.multiprocess.JavaProcessWrapper
 
getIntervalNestedInPlotDefinition(MonteCarloSimulationCompliantObject, int) - Method in class repicea.simulation.REpiceaPredictor
This method checks if the interval definition is available for the stand at that date.
getInverseMatrix() - Method in class repicea.math.Matrix
This method returns the inverse matrix of this matrix.
getIsserlisMatrix() - Method in class repicea.math.Matrix
This method returns a Matrix that corresponds to the Isserlis theorem given that matrix this is a variance-covariance matrix.
getJavaArchitecture() - Static method in class repicea.lang.REpiceaSystem
Returns the architecture of the JVM, i.e.
getJavaIOTmpDir() - Static method in class repicea.lang.REpiceaSystem
This method returns the temporary input/output directory.
getJreVersion() - Method in class repicea.console.TriggerSettings
 
getJVMRevision() - Static method in class repicea.lang.REpiceaSystem
This method returns the revision of the virtual machine.
getJVMSettings() - Method in class repicea.multiprocess.JavaProcess
This method returns the options of the JVM as set by the user.
getJVMVersion() - Static method in class repicea.lang.REpiceaSystem
This method returns the version of the virtual machine.
getKeyForThisValue(String) - Method in class repicea.util.Index
This method returns the key associated with this value.
getKroneckerProduct(Matrix) - Method in class repicea.math.Matrix
This method calculates the Kronecker product of this by the m Matrix object.
getLabel(String, int) - Static method in class repicea.gui.UIControlManager
This method returns a JLabel instance.
getLabel(REpiceaTranslator.TextableEnum, int) - Static method in class repicea.gui.UIControlManager
This method returns a JLabel instance.
getLabel(String) - Static method in class repicea.gui.UIControlManager
This method returns a JLabel instance with no predefined width.
getLabel(REpiceaTranslator.TextableEnum) - Static method in class repicea.gui.UIControlManager
This method returns a JLabel instance with no predefined width.
getLandfillProcessor(ProductionLineProcessor, ProductionLine) - Static method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getLandfillType() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
This method returns the type of landfill according to the IPCC (2006, Waste, p.3.14)
getLandOwnership() - Method in interface repicea.simulation.covariateproviders.plotlevel.LandOwnershipProvider
This method returns the land ownership of the plot instance.
getLandOwnership(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.LandOwnershipProvider.LandOwnership
This method returns the LandOwnership associated with the ownership code, which can be "PU" for public or "PR" for private-owned land.
getLandUse() - Method in interface repicea.simulation.covariateproviders.plotlevel.LandUseProvider
This method returns the land use of the plot instance.
getLanguage() - Method in class repicea.console.TriggerSettings
 
getLanguage(String) - Static method in enum repicea.util.REpiceaTranslator.Language
This method returns the Language enum that corresponds to a particular code.
getLargeScaleDisturbances() - Static method in enum repicea.simulation.disturbances.DisturbanceTypeProvider.DisturbanceType
This method returns the list of large scale disturbances, mainly for a proper disturbance occurrence recording implementation.
getLastOccurrenceDateYrToDate(int) - Method in class repicea.simulation.disturbances.DisturbanceOccurrences
Returns the date of the latest occurrence
getLastStand() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
This method returns the last stand from the list of stands.
getLastStandDate() - Method in class lerfob.carbonbalancetool.CATTimeTable
 
getLastStatus() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
getLatinName() - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
getLatitudeDeg() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getLatitudeDeg() - Method in interface repicea.simulation.covariateproviders.plotlevel.GeographicalCoordinatesProvider
This method returns the latitude of the plot in degrees.
getLCA() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
getLCA() - Method in enum lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis.ReferenceLCA
Deprecated.
 
getLeftAnchor() - Method in interface repicea.simulation.processsystem.AnchorProvider
 
getLeftAnchor() - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
getLeftAnchor() - Method in class repicea.simulation.processsystem.ProcessorButton
 
getLeftInForestProcessor(ProductionLineProcessor, ProductionLine) - Static method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getLength() - Method in class repicea.io.GExportFieldDetails
 
getLifetimeMode() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
getLinearPredictions() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
getLinkFunctionType() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
This method returns the type of the link function.
getList() - Method in interface repicea.gui.ListManager
This method returns the list of UserInterfaceableObject-derived instance
getList() - Method in class repicea.simulation.processsystem.SystemManager
 
getListManager() - Method in class repicea.gui.dnd.DnDPanel
 
getListManager() - Method in class repicea.simulation.processsystem.SystemPanel
 
getListOfDatesUntilLastStandDate() - Method in class lerfob.carbonbalancetool.CATTimeTable
 
getLnDbhCm() - Method in interface repicea.simulation.covariateproviders.treelevel.LnDbhCmProvider
This method returns ln(dbh) with the dbh in cm.
getLnDbhCmPlus1() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getLnDbhCmPlus1() - Method in interface repicea.simulation.covariateproviders.treelevel.LnDbhCmPlus1Provider
This method returns ln(dbh + 1) with the dbh in cm.
getLocale() - Method in enum repicea.util.REpiceaTranslator.Language
Returns the locale associated with the language.
getLocation(Window) - Static method in class repicea.gui.UIControlManager
This method returns the location of the window.
getLocationIndex(double) - Method in class repicea.math.Matrix
This method returns a List of integers, which represent the index of the elements that are equal to parameter d.
getLogCategories() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns a Map instance with the species names as key and the corresponding List of LogCategory-derived instances as values.
getLogCategory(String, String) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns a specific LogCategory object among the selected tree log categories contained in this class.
getLogCategory() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the tree log category associated to this piece.
getLogCategoryList() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns a list of all the LogCategory instances.
getLogCategoryName() - Method in class repicea.simulation.treelogger.LogCategoryPanel
This method returns the name of the tree log category of this panel.
getLogCategoryNames() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns the list of the log category names.
getLogCategoryNamesFromTreeLogger() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
getLogDispatcher() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
getLoggableTrees() - Method in class repicea.simulation.treelogger.TreeLogger
This method returns the collection of LoggableTree instances that the logger has to work on.
getLogGradePerHa() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getLogGradePerHa() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns total volume and biomass by log grade categories over the simulation period or rotation.
getLongDummyVariable() - Method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
This method returns a 1x4 row vector of dummy variables which represent the species effect.
getLongitudeDeg() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getLongitudeDeg() - Method in interface repicea.simulation.covariateproviders.plotlevel.GeographicalCoordinatesProvider
This method returns the longitude of the plot in degrees.
getLowerBound() - Method in class repicea.stats.distributions.UniformDistribution
 
getLowerBound() - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method returns the lower bound of the numerical integration.
getLowerCholTriangle() - Method in class repicea.math.Matrix
This method compute the lower triangle of the Cholesky decomposition.
getLowerLimit() - Method in class repicea.stats.estimates.ConfidenceInterval
This method returns the lower bound of the interval.
getLUDecomposition() - Method in class repicea.math.Matrix
This method returns the LU decomposition of this Matrix instance.
getMainPanel() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog
 
getMainPanel() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getManagementType() - Method in interface repicea.simulation.covariateproviders.plotlevel.ManagementTypeProvider
This method returns the current management of the stand.
getManager() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
getManager() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
getMarginalPredictionsForThisStandAndSpecies(MathildeRecruitmentStand, MathildeTreeSpeciesProvider.MathildeTreeSpecies, int, boolean) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
This method returns the marginal prediction for a single species.
getMarketName() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
getMassProbability(int, double, double) - Static method in class repicea.stats.distributions.utility.NegativeBinomialUtility
This method returns the mass probability from a negative binomial distribution for a particular integer.
getMatch(Object) - Method in class repicea.gui.components.REpiceaMatchSelector
This method returns the match corresponding to the parameter.
getMatches() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
getMatchingFieldIndex() - Method in class repicea.io.tools.ImportFieldElement
 
getMathildeTreeSpecies() - Method in interface lerfob.predictor.mathilde.MathildeTreeSpeciesProvider
This method returns the enum instance that represents the species.
getMatrix() - Method in class repicea.math.FastArrayList
 
getMatrixX() - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
getMatrixX() - Method in interface repicea.stats.data.StatisticalDataStructure
Return the design matrix of the fixed effects.
getMatrixZ() - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
getMatrixZ() - Method in interface repicea.stats.data.HierarchicalStatisticalDataStructure
This method returns a Map of Matrix instance.
getMaximumLogLikelihood() - Method in class repicea.stats.estimators.MaximumLikelihoodEstimator
Returns the maximum log likelihood value after convergence.
getMaximumValue() - Method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
 
getMean() - Method in interface repicea.stats.CentralMomentsGettable
This method returns the first central moment, i.e.
getMean() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getMean(GaussianErrorTermList) - Method in class repicea.stats.distributions.CenteredGaussianDistribution
This method should be used in preference to the getMean() method.
getMean() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
getMean() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
getMean() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getMean() - Method in class repicea.stats.distributions.StudentTDistribution
 
getMean() - Method in class repicea.stats.distributions.TruncatedGaussianDistribution
 
getMean() - Method in class repicea.stats.distributions.UniformDistribution
 
getMean() - Method in class repicea.stats.distributions.UnknownDistribution
 
getMean() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns the estimate of the total, which is the mean of the realized point estimates.
getMean(GaussianErrorTermList) - Method in class repicea.stats.estimates.GaussianErrorTermEstimate
 
getMean() - Method in class repicea.stats.estimates.LawOfTotalVarianceMonteCarloEstimate
 
getMean() - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
getMean() - Method in class repicea.stats.estimates.PopulationTotalEstimate
This method returns the value of the Horvitz-Thompson estimator (tau hat).
getMean() - Method in class repicea.stats.RandomVariable
 
getMeanAnnualPrecipitationMm() - Method in interface repicea.simulation.covariateproviders.plotlevel.MeanAnnualPrecipitationMmProvider
This method returns the mean annual precipitation in mm.
getMeanAnnualTempAbove6C() - Method in interface repicea.simulation.covariateproviders.plotlevel.MeanSeasonalTemperatureProvider
Returns the monthly mean temperature above 6 degrees Celsius.
getMeanAnnualTemperatureC() - Method in interface repicea.simulation.covariateproviders.plotlevel.MeanAnnualTemperatureCProvider
This method returns the mean annual temperature in Celcius degrees.
getMeanCoordinatesForThisDepartment(FrenchDepartmentProvider.FrenchDepartment) - Method in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator
This method returns the mean coordinates for a given department.
getMeanPrecipitationOfGrowingSeason() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018ExtPlot
This method returns the mean precipitation from March to September for the period 1961-1990.
getMeanQuadraticDiameterCm() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getMeanQuadraticDiameterCm(Collection<? extends LightAllometryCalculableTree>) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method returns the mean quadratic diameter for a collection of trees.
getMeanQuadraticDiameterCm() - Method in interface repicea.simulation.covariateproviders.plotlevel.MeanQuadraticDiameterCmProvider
This method returns the mean quadratic diameter of the living trees (cm).
getMeanTemperatureOfGrowingSeason() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018ExtPlot
This method returns the mean temperature from March to September for the period 1961-1990.
getMeanValue(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getMeanValue(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getMemorizerPackage() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
getMemorizerPackage() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getMemorizerPackage() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getMemorizerPackage() - Method in class repicea.app.SettingMemory
 
getMemorizerPackage() - Method in class repicea.console.TriggerSettings
 
getMemorizerPackage() - Method in class repicea.gui.components.REpiceaMatchSelector
 
getMemorizerPackage() - Method in interface repicea.serial.Memorizable
This method creates a MemorizerPackage instance that can be sent in turn to the TemporaryMemorizer instance for serialization.
getMemorizerPackage() - Method in class repicea.simulation.processsystem.SystemManager
 
getMemorizerPackage() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
getMessage() - Method in exception repicea.io.tools.REpiceaRecordReader.NullInThisFieldException
 
getMethaneCorrectionFactor() - Method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature.LandfillType
This method returns the methane correction factor of the landfill site.
getMethaneEmissionsArrayCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnit
This method returns the CH4 carbon equivalent emissions through out the lifetime of the landfill product.
getMinimumValue() - Method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
 
getMinor(int, int) - Method in class repicea.math.Matrix
This method returns the minor of this matrix, ie the determinant of the Matrix that contains all the elements of the original matrix except those in row i and column j.
getMode() - Method in class repicea.simulation.processsystem.ToolButton
 
getModelDefinition() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getModelDefinition() - Method in interface repicea.stats.model.StatisticalModel
This method returns the model definition as entered by the user.
getModelRelatedVariance() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate.VariancePointEstimate
This method returns the estimate of the model-related variance.
getModifier(CATSensitivityAnalysisSettings.VariabilitySource, MonteCarloSimulationCompliantObject, String) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method returns the multiplicative modifier for sensitivity analysis.
getMonteCarloRealizationId() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getMonteCarloRealizationId() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getMonteCarloRealizationId() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getMonteCarloRealizationId() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getMonteCarloRealizationId() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getMonteCarloRealizationId() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getMonteCarloRealizationId() - Method in interface repicea.simulation.MonteCarloSimulationCompliantObject
This method returns the id of the Monte Carlo realization.
getMonteCarloRealizationId() - Method in class repicea.simulation.REpiceaPredictor.CruiseLine
 
getMonteCarloRealizationId() - Method in class repicea.simulation.REpiceaPredictor.IntervalNestedInPlotDefinition
 
getMu() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getMultiDimensionIntegral(AbstractMathematicalFunction, List<Integer>, Matrix) - Method in class repicea.stats.integral.GaussHermiteQuadrature
This method returns the value of a multi-dimension integral
getMultiplier() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameter
 
getN2OFactor() - Method in class lerfob.carbonbalancetool.CATSettings.GWP
This method returns the CO2 eq of the N2O gas
getName() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method returns a name that defines the parameters.
getName() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getName() - Method in interface lerfob.carbonbalancetool.CATUtility.ParameterWrapper
 
getName() - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
getName() - Method in class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor
 
getName() - Method in class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor
 
getName() - Method in enum lerfob.fagacees.FagaceesSpeciesProvider.FgSpecies
This method returns the name in lower case.
getName() - Method in class repicea.app.AbstractAppVersion
This method returns the application name.
getName() - Method in class repicea.app.AbstractGenericTask
 
getName() - Method in interface repicea.app.GenericTask
This method returns the name of the task.
getName() - Method in class repicea.console.Trigger
 
getName() - Method in class repicea.io.FormatField
This method returns the name of the instance.
getName() - Method in class repicea.io.GExportFieldDetails
 
getName() - Method in class repicea.io.javadbf.DBFField
Returns the name of the field.
getName() - Method in class repicea.multiprocess.CmdProcess
 
getName() - Method in interface repicea.multiprocess.IndependentProcess
This method returns the name of the process.
getName() - Method in class repicea.multiprocess.JavaProcess
 
getName() - Method in class repicea.simulation.HierarchicalLevel
 
getName() - Method in interface repicea.simulation.Parameterizable
Deprecated.
This method returns a name that defines the parameters.
getName() - Method in class repicea.simulation.processsystem.Processor
This method returns the name of the processor.
getName() - Method in class repicea.simulation.processsystem.SystemManager
 
getName() - Method in class repicea.simulation.treelogger.LogCategory
This method returns the name of this tree log category.
getName() - Method in class repicea.simulation.treelogger.TreeLogger
 
getName() - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
getNaturalOrder() - Static method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
This method returns the natural order of this enum variable.
getNegativeBinomialMean(Matrix, MathildeRecruitmentStand, MathildeTreeSpeciesProvider.MathildeTreeSpecies) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
 
getNewRegion() - Method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchRegionPriorTo2016
This method returns the new region as defined in 2016.
getNewValue() - Method in class repicea.simulation.REpiceaPredictorEvent
 
getNormalizedErrors() - Method in class repicea.stats.distributions.GaussianErrorTermList
 
getNumber() - Method in interface repicea.simulation.covariateproviders.treelevel.ExpansionFactorProvider
This method returns the number of stems represented by this tree instance.
getNumberOfDroughtsDuringUpcomingGrowthStep() - Method in interface lerfob.predictor.mathilde.climate.MathildeClimatePlot
This method returns the number of droughts that will occur during the upcoming growth step.
getNumberOfElements() - Method in class repicea.math.Matrix
This method returns the number of elements in a Matrix object.
getNumberOfFields() - Method in class repicea.io.FormatHeader
 
getNumberOfFunctionalUnits() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the number of functional units in this carbon unit.
getNumberOfIterations() - Method in class repicea.math.optimizer.NewtonRaphsonOptimizer
This method returns the number of iterations to reach convergence.
getNumberOfLongTasks() - Static method in enum lerfob.carbonbalancetool.CATTask.Task
 
getNumberOfMonteCarloRealizations() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method returns the number of Monte Carlo realizations for the sensitivity analysis.
getNumberOfObservations() - Method in class repicea.stats.data.DataSet
This method returns the number of observations in the dataset.
getNumberOfObservations() - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
getNumberOfObservations() - Method in interface repicea.stats.data.StatisticalDataStructure
Returns the number of observations in the data structure.
getNumberOfOccurrences() - Method in class repicea.simulation.disturbances.DisturbanceOccurrences
Return the number of occurrences.
getNumberOfParameters() - Method in class repicea.math.AbstractMathematicalFunction
This method returns the number of parameters involved in the function.
getNumberOfParameters() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getNumberOfRealizations() - Method in class repicea.stats.distributions.EmpiricalDistribution
This method returns the number of observations in this nonparametric distribution.
getNumberOfRealizations() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getNumberOfRealizations() - Method in interface repicea.stats.estimates.NumberOfRealizationsProvider
This method returns the number of realizations the estimate is based on
getNumberOfRecords() - Method in class repicea.io.FormatHeader
This method returns the number of records in the file.
getNumberOfRecords() - Method in class repicea.io.javacsv.CSVHeader
 
getNumberOfRecords() - Method in class repicea.io.javadbf.DBFHeader
 
getNumberOfRecords() - Method in class repicea.io.javasql.SQLHeader
 
getNumberOfStemsExpansionFactor() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the expansion factor for the number of stems.
getNumberOfStemsHa() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getNumberOfStemsHa() - Method in interface repicea.simulation.covariateproviders.plotlevel.StemDensityHaProvider
This method returns the stem density per hectare.
getNumberOfTrees(Collection<? extends LightAllometryCalculableTree>) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method returns the number of trees for a collection of trees.
getNumberOfVariables() - Method in class repicea.math.AbstractMathematicalFunction
This method returns the number of variables in the function.
getNumberOfVariables() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getNumberOfVariables() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
getNumberOfVariables() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
getNumberRealizations() - Method in interface repicea.simulation.covariateproviders.plotlevel.StochasticInformationProvider
This method returns the number of realizations to be made.
getNutrients() - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnit.Element
 
getObservationFrequencies(Collection) - Static method in class repicea.stats.sampling.SamplingUtility
This method returns the list of different observations and their frequency.
getObservationIndicesForThisGroup(int) - Method in class repicea.io.tools.REpiceaRecordReader
This method returns the indices of the observations for a given group.
getObservations() - Method in class repicea.stats.data.DataSet
Returns the observations of the data set.
getObservations() - Method in class repicea.stats.estimates.PointEstimate
 
getOldValue() - Method in class repicea.simulation.REpiceaPredictorEvent
 
getOneDimensionIntegral(AbstractMathematicalFunction, Integer, double) - Method in class repicea.stats.integral.AdaptativeGaussHermiteQuadrature
 
getOneDimensionIntegral(AbstractMathematicalFunction, Integer, double) - Method in class repicea.stats.integral.GaussHermiteQuadrature
This method makes it possible to integrate an AbstractStatisticalExpression through Gauss-Hermite quadrature.
getOptimalValue() - Method in class repicea.math.optimizer.AbstractOptimizer
This method returns the optimal value resulting from the optimization.
getOptimizerParameters() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getOrderedNodes(Set<QuadratureNode>) - Method in class repicea.stats.integral.GaussQuadrature
This method returns the correct number of nodes in the correct order.
getOriginalFunction() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
This method returns the original function.
getOriginalFunction() - Method in class repicea.stats.model.CompositeLogLikelihood
 
getOriginalFunction() - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
getOriginalFunction() - Method in class repicea.stats.model.IndividualLogLikelihood
 
getOriginalLocation() - Method in class repicea.simulation.processsystem.Processor
 
getOverbarkCommercialVolumeM3(CATCompatibleTree) - Static method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
This static method returns the volume over bark of a CATCompatibleTree instance.
getOverbarkVolumeM3BySpecies() - Method in interface lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlot
This method returns a Map with the species as keys and the volumes (m3) as values.
getOverbarkVolumeM3BySpecies() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getOwner() - Method in class repicea.gui.REpiceaFrame
 
getOwner() - Method in class repicea.simulation.processsystem.ProcessorButton
This method returns the Processor instance that owns this button.
getOwnerHashCode() - Method in class repicea.net.RemoteListener
 
getPackagePath(Class) - Static method in class repicea.util.ObjectUtility
This method returns the path of a particular class.
getParameter(Distribution.Type) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
getParameter() - Method in enum repicea.math.optimizer.AbstractOptimizer.LineSearchMethod
 
getParameterEstimates() - Method in class repicea.simulation.SensitivityAnalysisParameter
 
getParameterEstimates() - Method in interface repicea.stats.estimators.Estimator
This method returns the parameter estimates.
getParameterEstimates() - Method in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
getParameterEstimates() - Method in class repicea.stats.estimators.OLSEstimator
 
getParameters(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getParameters(AWSModelCore.SubModelID) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getParameters() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
getParameters() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel.LikelihoodValue
 
getParameters() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
getParameters() - Method in class repicea.stats.model.lm.LinearModel
 
getParameters() - Method in interface repicea.stats.model.StatisticalModel
 
getParametersAtMaximum() - Method in class repicea.math.optimizer.AbstractOptimizer
 
getParametersForThisRealization(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
This method calls the setSpecificParametersDeviateForThisRealization method if the parameter variability is enabled and returns a realization-specific simulated vector of model parameters.
getParametersForThisRealization(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.SensitivityAnalysisParameter
This method calls the setSpecificParametersDeviateForThisRealization method if the parameter variability is enabled and returns a realization-specific simulated vector of model parameters.
getParameterValue(int) - Method in class repicea.math.AbstractMathematicalFunction
This method retrieve the parameter defined by the parameterName parameter.
getParameterValue(int) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getParameterValue(int) - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
getParameterValueForThisSubject(MonteCarloSimulationCompliantObject) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameter
 
getParentComponent(Component, Class<? extends Container>) - Static method in class repicea.gui.CommonGuiUtility
This method looks for the Container instance that owns this component.
getParentDirectory(File) - Method in class repicea.gui.ParentDrivenFileSystemView
 
getParentWindow(Component) - Static method in class repicea.gui.CommonGuiUtility
This method looks for the Window instance that owns this component.
getPdfValue() - Method in class repicea.stats.distributions.TruncatedGaussianDistribution.Bound
 
getPlotWeight() - Method in interface repicea.simulation.covariateproviders.treelevel.TreeWeightProvider
This method returns the plot weight.
getPlotWeightExpansionFactor() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the plot weight expansion factor in the case of unequal sampling probability or unequal areas represented by each plot.
getPopulationSize() - Method in class repicea.stats.estimates.PointEstimate
 
getPossibleValuesInThisField(int) - Method in class repicea.stats.data.DataSet
This method returns all the possible values in this field.
getPotentialMatches() - Method in class repicea.gui.components.REpiceaMatchSelector
 
getPotentialPanel() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
getPotentialVegetation() - Method in interface repicea.simulation.covariateproviders.plotlevel.PotentialVegetationProvider
This method returns the potential vegetation type code (3 characters) as defined by the Quebec Ministry of Natural Resources and Wildlife
getPrecision() - Method in class repicea.io.javasql.SQLField
Return the precision of the field.
getPred() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getPredicted() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
getPredicted() - Method in class repicea.stats.model.lm.LinearModel
 
getPredicted() - Method in interface repicea.stats.model.StatisticalModel
This method returns a vector of predicted values.
getPredictedTaperForTheseHeights(AbstractStemTaperPredictor.BasicStemTaperTree, List<Double>, Object...) - Method in class repicea.simulation.stemtaper.AbstractStemTaperPredictor
This method computes the stem taper.
getPredictedTaperForTheseSegments(AbstractStemTaperPredictor.BasicStemTaperTree, StemTaperSegmentList) - Method in class repicea.simulation.stemtaper.AbstractStemTaperPredictor
This method computes the stem taper.
getPredictionForThisStand(AWSStand, AWSTreatment) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method generates three predictions : 1- the probability of stand damage, 2- the probability of total damage (>75% of basal area damaged) conditional on the occurrence of stand damaged, and 3- the proportion of stand damage (<75% of basal area damaged) given that the stand is not totally damaged.
getPredictions() - Method in class repicea.stats.model.CompositeLogLikelihood
This method returns all the predicted values.
getPredictionVector() - Method in class repicea.stats.model.glm.LikelihoodGLM
 
getPredictionVector() - Method in class repicea.stats.model.IndividualLikelihood
 
getPredictionVector() - Method in class repicea.stats.model.IndividualLogLikelihood
 
getPredictionVector() - Method in interface repicea.stats.model.LikelihoodCompatible
This method returns the prediction associated with the observation.
getPreferredSize() - Method in class repicea.simulation.processsystem.ProcessorButton
 
getPreferredSize() - Method in class repicea.simulation.processsystem.SystemLabel
 
getPrimaryProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
getPrimaryProcessors() - Method in class repicea.simulation.processsystem.SystemManager
This method returns the list of primary processors, ie.
getProbabilities() - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSStand
This method serves to retrieve the probabilities associated to this stand.
getProbability() - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSTree
 
getProbabilityDensity(Matrix) - Method in class repicea.stats.distributions.StandardGaussianDistribution
This method returns the result of the probability density function of the distribution parameter.
getProbabilityLevel() - Method in class repicea.stats.estimates.ConfidenceInterval
This method returns the probability level of the interval.
getProbabilityOfBeingOnPrivateLand() - Method in interface lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlot
This method returns the probability that the plot is located on private land.
getProbabilityOfBeingOnPrivateLand() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getProbabilityOfDamageForThisTree(BWDTree) - Method in class lerfob.windstormdamagemodels.bockwindddamagemodel.BWDModel
This method returns the probability of wind damage for an individual tree.
getProcessedVolumeAtCreationDate() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the volume of the product as it was created.
getProcessFeaturesPanel() - Method in class lerfob.carbonbalancetool.productionlines.AbstractProductionLineProcessor
 
getProcessFeaturesPanel() - Method in class repicea.simulation.processsystem.Processor
This method returns other process features when the processor button is double clicked.
getProcessor() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
getProductEstimate(double) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getProductEstimate(double) - Method in class repicea.stats.estimates.Estimate
This method returns an difference estimate.
getProductEstimate(Estimate<?>) - Method in class repicea.stats.estimates.Estimate
Returns an estimate of the product of two parametric univariate estimate.
getProductEstimate(double) - Method in class repicea.stats.estimates.MonteCarloEstimate
 
getProductEvolutionPerHa() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getProductEvolutionPerHa() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the HWPs by use class at the different steps of the simulation.
getProductionLine() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getProductionLineName() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
getProductionLineNames() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method provides the names of the different production lines.
getProductionLineNames() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
getProductionLines() - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
getProductionLineToBeSentTo() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
getProductOfManyEstimates(List<Estimate>) - Static method in class repicea.stats.estimates.Estimate
 
getProductProportions(boolean, CarbonUnit.Element) - Method in class lerfob.carbonbalancetool.CATProductCompartment
This method returns the proportion of use class.
getProperty(String, String) - Method in class repicea.app.SettingMemory
This method returns a previously saved property or a default value if the property has not been set yet.
getProperty(String, double) - Method in class repicea.app.SettingMemory
This method returns a previously saved property or a default value if the property has not been set yet.
getProperty(String, boolean) - Method in class repicea.app.SettingMemory
This method returns a previously saved property or a default value if the property has not been set yet.
getProperty(String, int) - Method in class repicea.app.SettingMemory
This method returns a previously saved property or a default value if the property has not been set yet.
getProperty(WoodPiece.Property) - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the value of a given property.
getPropertyName() - Method in class repicea.simulation.REpiceaPredictorEvent
 
getPropertyName() - Method in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
getProportion() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
getProportionOfDamagedTrees(BWDStand, double) - Method in class lerfob.windstormdamagemodels.bockwindddamagemodel.BWDModel
This method returns the proportion of damaged trees always in terms of number of stems.
getQuantile(double) - Static method in class repicea.stats.distributions.utility.GaussianUtility
This method returns the quantiles of the distribution.
getQuantileForProbability(double) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getQuantileForProbability(double) - Method in class repicea.stats.estimates.GaussianErrorTermEstimate
 
getQuantileForProbability(double) - Method in class repicea.stats.estimates.GaussianEstimate
 
getQuantileForProbability(double) - Method in class repicea.stats.estimates.MonteCarloEstimate
This method returns the percentile of the Monte Carlo simulated distribution.
getQuantileForProbability(double) - Method in class repicea.stats.estimates.PointEstimate
 
getQuantileForProbability(double) - Method in class repicea.stats.estimates.UniformEstimate
 
getRandom() - Static method in class repicea.stats.StatisticalUtility
This method returns a Random generator.
getRandomCoordinates(int, FrenchDepartmentProvider.FrenchDepartment) - Method in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator
This method returns a number of plot coordinates for imputation.
getRandomDeviate() - Method in class repicea.simulation.ModelParameterEstimates
 
getRandomDeviate() - Method in class repicea.stats.estimates.Estimate
This method returns a random deviate from this estimate.
getRandomDeviate(GaussianErrorTermList) - Method in class repicea.stats.estimates.GaussianErrorTermEstimate
 
getRandomDeviate() - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
getRandomEffect(AWSModelCore.RandomEffectID) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
This method records the AWSStand and its random effect vector in the randomDeviatesRegistry member.
getRandomEffects(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
getRandomEffects(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
getRandomEffects(MonteCarloSimulationCompliantObject) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getRandomEffectsForThisSubject(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
This method calls the setSpecificPlotRandomEffectsForThisStand method if the random effects variability is enabled and returns a stand-specific simulated vector of random effects.
getRandomRealization() - Method in interface repicea.stats.Distribution
This method draws a random realization from the distribution.
getRandomRealization() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getRandomRealization(GaussianErrorTermList) - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.StudentTDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.TruncatedGaussianDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.UniformDistribution
 
getRandomRealization() - Method in class repicea.stats.distributions.UnknownDistribution
 
getRank() - Method in class repicea.simulation.treelogger.WoodPiece
This method return the rank of the log in the tree from the stump to the top.
getRatio() - Method in enum lerfob.carbonbalancetool.CATCarbonContentRatioProvider.AverageCarbonContent
This method returns the average carbon content ratio.
getRealization(int) - Method in interface repicea.simulation.covariateproviders.plotlevel.StochasticInformationProvider
This method returns the realization.
getRealizationIds() - Method in interface repicea.simulation.covariateproviders.plotlevel.StochasticInformationProvider
Returns the ids of the different realizations
getRealizations() - Method in class repicea.stats.distributions.EmpiricalDistribution
This method returns the array that contains all the observations of this distribution.
getRealizedErrors() - Method in class repicea.stats.distributions.GaussianErrorTermList
 
getRecordCount() - Method in class repicea.io.FormatReader
This method returns the number of records that contains the file read by the FormatReader instance.
getRecordSet() - Method in class repicea.io.tools.ExportTool.InternalSwingWorkerForRecordSet
Deprecated.
 
getRecordsToSave() - Method in interface repicea.io.FormatCompliant
This method returns the records to be saved.
getReferenceStands() - Static method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
This method returns a copy of static member referenceStands.
getReferenceStands() - Static method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
This method returns a copy of static member referenceStands.
getReferenceTables() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getRelativeH100D100Ratio(AWSTree.AWSTreeSpecies, double, double, int) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables
This method returns the relative ratio between h100:d100 with respect to average observed ratios by 5-m dominant height class.
getRelativePackagePath(Class) - Static method in class repicea.util.ObjectUtility
This method returns the relative path of a particular class with respect to the rootpath.
getRelativePartsVector() - Method in class repicea.io.RelativePathFile
 
getRelativePath() - Method in class repicea.io.RelativePathFile
 
getRelativePointFromDropEvent(DropTargetDropEvent) - Method in class repicea.gui.dnd.DnDPanel
 
getReleasedCarbonArray() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns the released carbon along in time given the product has been actualized.
getRemoteListeners() - Method in class repicea.net.RemoteEventManager
This method returns the remote listeners.
getRemoteOwnerClassName() - Method in class repicea.net.RemoteListener
 
getRescalingFactors() - Method in class repicea.simulation.stemtaper.StemTaperSegment
 
getRescalingFactors() - Method in class repicea.stats.integral.CompositeSimpsonRule
 
getRescalingFactors() - Method in class repicea.stats.integral.GaussHermiteQuadrature
 
getRescalingFactors() - Method in class repicea.stats.integral.GaussLegendreQuadrature
 
getRescalingFactors() - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method returns the rescaling factor for the numerical integration.
getRescalingFactors() - Method in class repicea.stats.integral.TrapezoidalRule
 
getRescalingFactorsAcrossSegments() - Method in class repicea.simulation.stemtaper.StemTaperSegmentList
This method returns a List of Double instances that correspond to the rescaling factors across the segments.
getResidualError() - Method in class repicea.simulation.REpiceaPredictor
This method returns the residual error under the assumption of iid and that the error is unique for all groups.
getResidualErrorForThisSubject(MonteCarloSimulationCompliantObject, Enum<?>) - Method in class repicea.simulation.REpiceaPredictor
This method returns the residual error or the vector of residual errors associated with the subjectId.
getResidualErrorForThisVersion() - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
getResiduals() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
getResiduals() - Method in class repicea.stats.model.lm.LinearModel
 
getResiduals() - Method in interface repicea.stats.model.StatisticalModel
This method returns a vector of residuals, that is observed values minus predictions.
getResidualVariance() - Method in class repicea.stats.estimators.OLSEstimator
This method returns the residual variance of the OLS algorithm.
getResidualVariance() - Method in class repicea.stats.model.lm.LinearModel
This method returns the residual variance only if the optimizer is an instance of OLSOptimizer.
getRestartButton() - Method in class repicea.net.server.gui.ClientThreadPanel
 
getResultForThisTree(AWSTree) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method provides a prediction of damage for an individual tree.
getResultId() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getResultId() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the result id for this instance.
getRevision() - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
This method returns the version of the lerfob-cat application.
getRevision() - Method in class repicea.app.AbstractAppVersion
This method returns the revision number, i.e.
getRevision() - Method in class repicea.console.TriggerSettings
 
getRightAnchor() - Method in interface repicea.simulation.processsystem.AnchorProvider
 
getRightAnchor() - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
getRightAnchor() - Method in class repicea.simulation.processsystem.ProcessorButton
 
getRootBiomassContentForOakKg(DbhCmProvider) - Static method in class lerfob.biomassmodel.drexhagecolin.DrexhageAndColinRootBiomassPredictor
This static method returns the root biomass for Oak trees in kg.
getRootBiomassForBeechKg(DbhCmProvider) - Static method in class lerfob.biomassmodel.drexhagecolin.DrexhageAndColinRootBiomassPredictor
This static method returns the root dry biomass for Beech trees in kg.
getRootPathname() - Method in class repicea.io.RelativePathFile
 
getRoots() - Method in class repicea.gui.ParentDrivenFileSystemView
 
getRotationLength() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
This method returns the rotation length in year.
getRotationLength() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getRotationLength() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns either the rotation length (to the final cut) or the projection length in case of uneven-aged stand.
getRowCount() - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getRowIndex(Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getRowIndex() - Method in class repicea.io.javasql.SQLReader
Returns the row index at which the reader is.
getRowIndex() - Method in class repicea.stats.estimates.Estimate
This method returns the row index.
getRowKey(int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getRowKeys() - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getSample(List<?>, int, boolean) - Static method in class repicea.stats.sampling.SamplingUtility
This method returns a sample from a population.
getSample(List<?>, int) - Static method in class repicea.stats.sampling.SamplingUtility
This method returns a sample from a population drawn according to a random sample without replacement.
getSample(Map, int) - Static method in class repicea.stats.sampling.SamplingUtility
This method returns a sample from a population drawn without replacement..
getSampleSize() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
Returns the sample size the individual point estimates are based on or -1 if no point estimate is available at the moment.
getSampleSize() - Method in class repicea.stats.estimates.CorrelationEstimate
This method return the sample size.
getSamplingRelatedVariance() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate.VariancePointEstimate
This method returns the estimate of the sampling-related variance.
getSamplingUnitID() - Method in interface repicea.simulation.covariateproviders.treelevel.SamplingUnitIDProvider
This method returns the id of the sample plot that contains this tree.
getSaveThread() - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
getScalingFactor() - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
 
getSectionDiameter() - Method in class repicea.simulation.stemtaper.StemTaperCrossSection
This method returns the diameter of the section (mm).
getSectionHeight() - Method in class repicea.simulation.stemtaper.StemTaperCrossSection
This method returns the height of the section (m).
getSelectedExportOptions() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
getSelectedExportOptions() - Method in class repicea.io.tools.REpiceaExportTool
 
getSelectedGroupId() - Method in class repicea.io.tools.REpiceaRecordReader
This method returns the id of the selected group.
getSelectedIndex() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
This method returns the selected index the list.
getSelectedTreeLogger() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getSelectedTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getSelectedValue() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
This method returns the String selected in the list.
getSelector() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationImportFromOtherApp
This method returns the selector for the species in CAT.
getSelector() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
This method returns the selector for the species in CAT.
getSettingMemory() - Method in class lerfob.carbonbalancetool.CATSettings
 
getSettingMemory() - Method in class repicea.app.AbstractGenericEngine
This method returns the settings of the application.
getSettingMemoryFilename() - Method in class repicea.console.Trigger
 
getSettings() - Method in class repicea.console.Trigger
 
getShortDummyVariable() - Method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
This method returns a 1x3 row vector of dummy variables which represent the species effect.
getSigma2() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getSimulationSummary() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
This method returns a summary of simulation.
getSlopeInclinationPercent() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getSlopeInclinationPercent() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getSlopeInclinationPercent() - Method in interface repicea.simulation.covariateproviders.plotlevel.SlopeInclinationPercentProvider
This method returns the slope inclination in percentage.
getSocket() - Method in class repicea.net.server.ClientThread
 
getSocket() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
getSoilHorizonCDepthM() - Method in interface lerfob.windstormdamagemodels.bockwindddamagemodel.BWDTree
This method returns the C horizon depth (m).
getSonAnchor() - Method in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
getSonAnchor() - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
getSonAnchor() - Method in class repicea.simulation.processsystem.ValidProcessorLinkLine
 
getSource() - Method in class repicea.simulation.REpiceaPredictorEvent
 
getSourceActions(JComponent) - Method in class repicea.gui.dnd.ReplaceTextTransferHandler
 
getSpecies() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
getSpecies() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
getSpecies() - Method in interface lerfob.predictor.hdrelationships.FrenchHeightPredictor
Returns the species for the internal species-specific height predictor.
getSpecies(int) - Static method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
This method returns the species enum according to the code.
getSpecies() - Method in interface repicea.simulation.covariateproviders.treelevel.SpeciesProvider
This method returns the species name of this tree.
getSpecies() - Method in class repicea.simulation.treelogger.LogCategory
 
getSpeciesComposition() - Method in interface repicea.simulation.covariateproviders.plotlevel.SpeciesCompositionProvider
This method returns the composition of the plot, that is either broadleaved dominated, conifer dominated or mixed.
getSpeciesIn2014() - Static method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
getSpeciesList() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getSpeciesList() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
getSpeciesLogCategories(Object) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns the List of LogCategory-derived object for a particular species.
getSpeciesName() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
getSpeciesName() - Method in interface repicea.simulation.covariateproviders.treelevel.SpeciesNameProvider
This method returns the species name of this tree.
getSpeciesType() - Method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
 
getSpeciesType() - Method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
getSpeciesType() - Method in enum lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies
 
getSpeciesType() - Method in interface repicea.simulation.covariateproviders.treelevel.SpeciesTypeProvider
This method returns the species type of the tree.
getSpeciesType() - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
getSquaredDbhCm() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getSquaredDbhCm() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getSquaredDbhCm() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getSquaredDbhCm() - Method in interface repicea.simulation.covariateproviders.treelevel.SquaredDbhCmProvider
This method returns the square of dbh.
getSquaredDiameters(Matrix) - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
 
getSquaredLnDbhCmPlus1() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getSquaredLnDbhCmPlus1() - Method in interface repicea.simulation.covariateproviders.treelevel.SquaredLnDbhCmPlus1Provider
This method returns (ln(dbh + 1))^2 with the dbh in cm.
getStand() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getStandAndMonteCarloID() - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSStand
An id that is different for each Monte Carlo iteration if the stochastic mode is enabled
getStandAndMonteCarloID() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSStandImpl
 
getStandardDeviation() - Method in class repicea.stats.distributions.StandardGaussianDistribution
This method returns the lower triangle of the Cholesky decomposition of the variance-covariance matrix.
getStandardDeviation() - Method in class repicea.stats.distributions.StudentTDistribution
This method returns the lower triangle of the Cholesky decomposition of the variance-covariance matrix.
getStandID() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getStandID() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method return the identifier of the stand.
getStandIdentification() - Method in interface lerfob.carbonbalancetool.CATCompatibleStand
This method returns the identification of the stand.
getStandingPrices(FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies, int, int, int) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method makes it possible to retrieve the prices for a given period and a given target species.
getStandList() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getStandList() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationImportFromOtherApp
This method returns the stand list that was last read.
getStandList() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
This method returns the stand list that was last read.
getStandList() - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
This method returns the stand list that was last read.
getStandVariable(Enum) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getStartDateYr() - Method in class repicea.simulation.climate.REpiceaClimateChangeTrend
Returns the start date of the trend.
getStartValue(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getStartValue(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getStatement() - Method in class repicea.io.javasql.SQLField
 
getStatusClass() - Method in interface repicea.simulation.covariateproviders.treelevel.TreeStatusProvider
This method returns the status class of the tree.
getStdDevValue(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getStdDevValue(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getStemAndBranchesCommercialOverbarkVolume(double, double, FagaceesSpeciesProvider.FgSpecies) - Method in class lerfob.allometricrelationships.BouchonVolumeEquations
Calculates the commercial wood volume for the stem and the branches, using a small-end minimum diameter of 7cm.
getStemBasalAreaM2() - Method in interface repicea.simulation.covariateproviders.treelevel.BasalAreaM2Provider
This method returns the basal area of the tree object.
getStemCommercialOverbarkVolume(double, double, FagaceesSpeciesProvider.FgSpecies) - Method in class lerfob.allometricrelationships.BouchonVolumeEquations
Calculates the over-bark wood volume for STEM ONLY, using a small end minimum diameter of 7 cm using Bouchon Volume Tables (Bouchon 1982 for beech, Bouchon 1974 for oak)
getStockDensity(AWSTree.AWSTreeSpecies, int, double, double) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables
This method returns the ratio between the current basal area and the optimal basal area according to the yield tables.
getStratumFieldEnum() - Method in class repicea.io.tools.ImportFieldManager
 
getString(REpiceaTranslator.TextableEnum) - Static method in class repicea.util.REpiceaTranslator
This method returns the message associated to this messageID Enum instance.
getStringProperties() - Method in class repicea.app.SettingMemory
This method returns the Map of properties.
getStudentT() - Method in class repicea.stats.estimates.CorrelationEstimate
This method returns the t value under the assumption that the true correlation is null.
getSubjectId(CATSensitivityAnalysisSettings.VariabilitySource, CATCompatibleTree) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getSubjectId() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getSubjectId() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getSubjectId() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
getSubjectId() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
getSubjectId() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
getSubjectId() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020TreeImpl
 
getSubjectId() - Method in interface repicea.simulation.MonteCarloSimulationCompliantObject
This method returns an object that makes it possible to identify the subject that implements this interface.
getSubjectId() - Method in class repicea.simulation.REpiceaPredictor.CruiseLine
 
getSubjectId() - Method in class repicea.simulation.REpiceaPredictor.IntervalNestedInPlotDefinition
 
getSubjectPlusMonteCarloSpecificId(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
getSubjectPlusMonteCarloSpecificId(String, int) - Static method in class repicea.simulation.REpiceaPredictor
 
getSubMatrix(int, int, int, int) - Method in class repicea.math.Matrix
This method returns a submatrix of this matrix.
getSubMatrix(List<Integer>, List<Integer>) - Method in class repicea.math.Matrix
This method returns a sub matrix whose elements correspond to the indices listed in the row index list and the column index list.
getSubModule(int) - Method in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
getSubProcessorIntakes() - Method in class repicea.simulation.processsystem.Processor
This method returns the processor intakes in a map.
getSubProcessors() - Method in class repicea.simulation.processsystem.Processor
This method returns the processes that are subordinated to this one.
getSubstitutionCO2EqFunctionalUnit(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getSuggestedIPCCValue() - Method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
 
getSumAcrossSpecies() - Method in class lerfob.carbonbalancetool.CATUtilityMaps.SpeciesMonteCarloEstimateMap
Returns the MonteCarloEstimateMap instance of the sum across the species.
getSumEstimate(Estimate<?>) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getSumEstimate(Estimate<?>) - Method in class repicea.stats.estimates.Estimate
This method returns a sum of two estimates.
getSumEstimate(Estimate<?>) - Method in class repicea.stats.estimates.MonteCarloEstimate
 
getSummary() - Method in class repicea.stats.model.AbstractStatisticalModel
 
getSummary() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
getSummary() - Method in interface repicea.stats.model.StatisticalModel
This method returns the results of the fit on screen.
getSumOfElements() - Method in class repicea.math.Matrix
This method returns the sum of all the elements in the Matrix instance.
getSumOfElements(int, int, int, int) - Method in class repicea.math.Matrix
This method returns the sum of the elements of a submatrix.
getSystemLayout() - Method in class repicea.simulation.processsystem.SystemPanel
 
getTable() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class repicea.gui.components.REpiceaCellEditor
 
getTargetHashCode() - Method in class repicea.net.RemoteEvent
This method returns the hashcode of the target (local) class.
getTasksToDo() - Method in class repicea.gui.REpiceaMenuItem
This method returns the tasks to do associated with this menu item.
getTimeSinceFirstKnownDateYrs(int) - Method in interface repicea.simulation.covariateproviders.plotlevel.NaturalDisturbanceInformationProvider
This method returns the time since the first known date.
getTimeSinceLastCutYr() - Method in interface repicea.simulation.covariateproviders.plotlevel.TimeSinceLastCutYrProvider
This method returns the number of years since the last harvesting.
getTimeSinceLastDisturbanceYrs(DisturbanceTypeProvider.DisturbanceType, int) - Method in interface repicea.simulation.covariateproviders.plotlevel.NaturalDisturbanceInformationProvider
This method returns the time since the last disturbance or null if this time is unknown.
getTimeTable() - Method in class lerfob.carbonbalancetool.CATCompartment
 
getTimeTable() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
This method returns the TimeScale instance the simulation has been run with.
getTimeTable() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
getTimeTable() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns an array with the date or age of the carbon simulation.
getTimeTable() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
getTitle() - Method in class repicea.console.Trigger
 
getTitle(Class<? extends Window>) - Static method in class repicea.gui.UIControlManager
This method returns the title associated to this Window-derived class.
getTitledBorder(String) - Static method in class repicea.gui.UIControlManager
This static method returns a Border instance with a title.
getTitleForThisDialog() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getToken() - Method in class repicea.io.javacsv.CSVHeader
 
getTopHeight() - Method in class repicea.simulation.stemtaper.StemTaperSegment
This method returns the height (m) of the upper cross section.
getTopLeftPanel() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
getTopLeftPanel() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
getTopPanels() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
getTopPanels() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
getTopRightPanel() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
getTopRightPanel() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
getTotalAboveGroundOverbarkVolume(double, double, FagaceesSpeciesProvider.FgSpecies) - Method in class lerfob.allometricrelationships.ValletTotalAboveGroundVolumeEquations
This method implements the models developed in Vallet et al.
getTotalCarbonSubstitution(CATCompartmentManager) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the total substitution effect of this product.
getTotalCombustionEmissionsCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the total emissions due to combusion in CO2 eq.
getTotalHeatProductionMgWh() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the total heat production from this carbon unit in KWh.
getTotalHeatProductionMgWhHa(double) - Method in class lerfob.carbonbalancetool.CATProductCompartment
 
getTotalMethaneEmissionsCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnit
This method returns the total CH4 carbon equivalent emissions through out the lifetime of the landfill product.
getTotalNonRenewableCarbonEmissionsMgCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
This method returns the emissions in Mg of CO2 Eq.
getTotalNonRenewableCarbonEmissionsMgCO2Eq() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method computes the carbon emissions related to the processing of this end product.
getTotalVariance() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate.VariancePointEstimate
This method returns the estimate of the total variance.
getTotalVolumeM3(Collection<? extends AllometryCalculableTree>) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method computes the above ground volume for a collection of trees.
getTotalVolumeM3() - Method in interface repicea.simulation.covariateproviders.treelevel.TotalVolumeM3Provider
This method calculates the total volume of the tree.
getTotalVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the volume (m3) of this wood piece including the bark without any expansion factor.
getTrace() - Method in class repicea.math.Matrix
This method computes the trace of the matrix, i.e.
getTranslation(REpiceaTranslator.TextableEnum, REpiceaTranslator.Language) - Static method in class repicea.util.REpiceaTranslator
This method returns the translation of a particular TextableEnum instance.
getTreatment() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getTreatmentVariable(AWSTreatment.TreatmentVariable) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getTree() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getTreeFromWhichComesThisPiece() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the LoggableTree object from which this piece originates.
getTreeInstance() - Method in class repicea.simulation.treelogger.TreeLoggerCompatibilityCheck
 
getTreeLogCategory() - Method in class repicea.simulation.treelogger.LogCategoryPanel
This method returns the TreeLogCategory object this TreeLogCategoryPanel is based on.
getTreeLogger() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns the TreeLogger instance of the settings.
getTreeLogger() - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
This method returns the TreeLogger instance that is contained in this wrapper.
getTreeLoggerClass() - Method in class repicea.simulation.treelogger.TreeLoggerDescription
This method returns the TreeLogger class.
getTreeLoggerDescription() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns a TreeLoggerDescription based on the TreeLogger class of this instance.
getTreeLoggerDescriptions() - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
getTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
getTreeLoggerParameters() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParametersDialog
 
getTreeLoggerParameters() - Method in class repicea.simulation.treelogger.TreeLogger
This method returns the parameters of the TreeLogger object.
getTreeLoggerParameters() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
getTrees(TreeStatusProvider.StatusClass) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
getTrees(TreeStatusProvider.StatusClass) - Method in interface repicea.simulation.covariateproviders.plotlevel.TreeStatusCollectionsProvider
This method returns the Collection of Tree instances with a particular status class.
getTreesForFrenchHDRelationship() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Stand
This method returns the trees that are available in the stand for height prediction.
getTreesForFrenchHDRelationship() - Method in interface lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Plot
This method returns the trees that are available in the stand for height prediction.
getTreesForFrenchHDRelationship() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
getTreesFromStand(FrenchHDRelationship2014Stand) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
getTreesFromStand(FrenchHDRelationship2018Plot) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
getTreesFromStand(Stand) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method selects the trees from which the blups must be calculated.
getTreesLarger(Collection<? extends LightAllometryCalculableTree>, double) - Method in class repicea.simulation.allometrycalculator.AllometryCalculator
This method returns a collection of CalculableTree objects that have a dbh greater than a particular threshold.
getTreeVariable(Enum) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
getTrueParameterIndices() - Method in class repicea.simulation.ModelParameterEstimates
This method returns the indices of the parameters that were truly estimated.
getTrueRootPath(Class) - Static method in class repicea.util.ObjectUtility
This method returns the root path of the application.
getType() - Method in class repicea.gui.components.NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent
 
getType() - Method in class repicea.io.GExportFieldDetails
 
getType() - Method in interface repicea.stats.Distribution
This method returns the type of the distribution.
getType() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getType() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
getType() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
getType() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getType() - Method in class repicea.stats.distributions.StudentTDistribution
 
getType() - Method in class repicea.stats.distributions.UniformDistribution
 
getType() - Method in class repicea.stats.distributions.UnknownDistribution
 
getType() - Method in class repicea.stats.model.glm.LinkFunction
Provides the type of link function.
getTypeName() - Method in class repicea.io.javasql.SQLField
This method returns the string code associated with the type.
getUI(Container) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
getUI(Container) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
getUI() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
getUI() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogCategory
 
getUI(Container) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
 
getUI(Container) - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
getUI(Container) - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.AbstractProcessorButton
 
getUI() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
getUI() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getUI() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.LandfillProcessor
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.LeftInForestProcessor
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
getUI(Container) - Method in class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor
 
getUI() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
getUI(Container) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
getUI() - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
getUI(Container) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
 
getUI() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
getUI(Container) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
getUI(Container) - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
getUI(Container) - Method in class lerfob.treelogger.mathilde.MathildeTreeLoggerParameters
 
getUI() - Method in class repicea.app.Logger
 
getUI() - Method in class repicea.console.Trigger
 
getUI(Container) - Method in class repicea.gui.components.REpiceaMatchSelector
 
getUI() - Method in interface repicea.gui.REpiceaUIObject
This method returns the GUI interface of the class that implements this interface.
getUI(Container) - Method in interface repicea.gui.REpiceaUIObjectWithParent
This method returns the GUI interface of the class that implements this interface.
getUI(Container) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
getUI() - Method in class repicea.io.tools.ImportFieldElement
 
getUI(Container) - Method in class repicea.io.tools.ImportFieldManager
 
getUI(Container) - Method in class repicea.io.tools.REpiceaExportTool
 
getUI() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
getUI(Container) - Method in class repicea.simulation.processsystem.Processor
 
getUI() - Method in class repicea.simulation.processsystem.Processor
 
getUI(Container) - Method in class repicea.simulation.processsystem.ProcessorButton
 
getUI(Container) - Method in class repicea.simulation.processsystem.ProcessorLinkLine
 
getUI(Container) - Method in class repicea.simulation.processsystem.SystemManager
 
getUI(Container) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
getUI() - Method in class repicea.stats.data.DataSet
 
getUncorrectedVariance() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns the uncorrected variance of the total estimate.
getUpdatedClimateVariableMap(REpiceaClimateChangeTrend, int) - Method in interface repicea.simulation.climate.REpiceaClimateVariableMap.UpdatableClimateVariableMap
Performs the change on the climate variable following a linear extrapolation pattern.
getUpperBound() - Method in class repicea.stats.distributions.UniformDistribution
 
getUpperBound() - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method returns the upper bound of the numerical integration.
getUpperLimit() - Method in class repicea.stats.estimates.ConfidenceInterval
This method returns the upper bound of the interval.
getUseClass() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnit
This method returns the use class of this EndProduct instance.
getUseClass() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getUseMode() - Method in interface repicea.simulation.UseModeProvider
This method returns the use mode of the model.
getUserConnection(Object) - Static method in class repicea.io.javasql.DatabaseConnectionManager
This method retrieves the connection associated with a particular user.
getUserInterfacePanel() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
getUserInterfacePanel() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
getUserInterfacePanel() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
getValue() - Method in class lerfob.carbonbalancetool.CATExponentialFunction
 
getValue(Comparable, Comparable) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getValue(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
getValue(MonteCarloSimulationCompliantObject, String) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
getValue() - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor.InternalMathematicalFunction
 
getValue() - Method in class repicea.gui.components.NumberFormatFieldFactory.JFormattedNumericField
 
getValue() - Method in class repicea.gui.components.REpiceaSlider
This method returns the value of the slider.
getValue() - Method in class repicea.io.GExportFieldDetails
This method returns the unformatted value of this field.
getValue() - Method in class repicea.math.AbstractMathematicalFunction
 
getValue() - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getValue() - Method in interface repicea.math.EvaluableFunction
This method provides the result of the function evaluation.
getValue() - Method in class repicea.math.ExponentialFunctionWrapper
 
getValue() - Method in class repicea.math.LogFunctionWrapper
 
getValue() - Method in class repicea.stats.integral.QuadratureNode
This method returns the value of the node.
getValue() - Method in class repicea.stats.LinearStatisticalExpression
 
getValue() - Method in class repicea.stats.model.CompositeLogLikelihood
 
getValue() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
getValue() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
 
getValue() - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
getValue() - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
getValue() - Method in class repicea.stats.model.glm.HosmerLemeshowTest.HosmerLemeshowSubgroup
 
getValue() - Method in class repicea.stats.model.glm.LikelihoodGLM
 
getValue() - Method in class repicea.stats.model.glm.LinkFunction
 
getValueAt(int, int) - Method in class repicea.stats.data.DataSet
This method returns any object in the dataset at row i and column j.
getValueAt(int, String) - Method in class repicea.stats.data.DataSet
 
getValues() - Method in class repicea.io.GExportRecord
this method returns a List instance that contains all the values in this record.
getVariableValue(int) - Method in class repicea.math.AbstractMathematicalFunction
This method returns the value of the variable at index variableIndex
getVariableValue(int) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
getVariance() - Method in interface repicea.stats.CentralMomentsGettable
This method returns the second central moment, i.e.
getVariance() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getVariance(GaussianErrorTermList) - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
getVariance() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
getVariance() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
getVariance() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
getVariance() - Method in class repicea.stats.distributions.StudentTDistribution
 
getVariance() - Method in class repicea.stats.distributions.TruncatedGaussianDistribution
 
getVariance() - Method in class repicea.stats.distributions.UniformDistribution
 
getVariance() - Method in class repicea.stats.distributions.UnknownDistribution
 
getVariance() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
getVariance(GaussianErrorTermList) - Method in class repicea.stats.estimates.GaussianErrorTermEstimate
 
getVariance() - Method in class repicea.stats.estimates.JackknifeEstimate
 
getVariance() - Method in class repicea.stats.estimates.LawOfTotalVarianceMonteCarloEstimate
 
getVariance() - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
getVariance() - Method in class repicea.stats.estimates.PopulationTotalEstimate
This method returns the variance of the tau estimate.
getVariance() - Method in class repicea.stats.RandomVariable
 
getVarianceOfSquaredDiameter(Matrix) - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
 
getVarianceOfTotalEstimate() - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns the corrected variance of the total estimate.
getVectorOfThisField(String) - Method in class repicea.stats.data.DataSet
 
getVectorOfThisField(int) - Method in class repicea.stats.data.DataSet
 
getVectorY() - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
getVectorY() - Method in interface repicea.stats.data.StatisticalDataStructure
Return the vector of response variables.
getViewport() - Method in class repicea.gui.components.REpiceaScrollPane
 
getVolumeByLogGradePerHa() - Method in class lerfob.carbonbalancetool.CATProductCompartment
This method returns the list of the different log grades and their associated volumes and biomasses.
getVolumeEstimate() - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
This method returns a volume estimate from the integrated taper all along the heights contained in the heights member.
getVolumeEstimate(StemTaperSegmentList) - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
This method returns a volume estimate from the integrated taper all along the selected segments.
getVolumeProportion() - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
getWaitingClients() - Method in class repicea.net.server.AbstractServer
This method waits until the head of the queue is non null and returns the socket.
getWaitingClients() - Method in class repicea.net.server.JavaLocalGatewayServer
This method waits until the head of the queue is non null and returns the socket.
getWeight() - Method in interface repicea.simulation.covariateproviders.plotlevel.PlotWeightProvider
This method returns the weight of the plot instance.
getWeight() - Method in class repicea.stats.integral.QuadratureNode
This method returns the weight of the node.
getWeightedBarkVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the weighted volume of the bark in m3.
getWeightedTotalVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the weighted volume of the wood and the bark in m3.
getWeightedWoodVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the weighted volume of this WoodPiece instance in m3.
getWeights() - Method in class repicea.simulation.stemtaper.StemTaperSegment
 
getWeights() - Method in class repicea.stats.integral.CompositeSimpsonRule
 
getWeights() - Method in class repicea.stats.integral.GaussHermiteQuadrature
 
getWeights() - Method in class repicea.stats.integral.GaussLegendreQuadrature
 
getWeights() - Method in class repicea.stats.integral.LaplacianApproximation
 
getWeights() - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method returns the weights associated to the numerical integration.
getWeights() - Method in class repicea.stats.integral.TrapezoidalRule
 
getWeightsAcrossSegments() - Method in class repicea.simulation.stemtaper.StemTaperSegmentList
This method returns a List of Double instances that correspond to the weights across the segments.
getWindowOwner() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
getWindowOwner() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getWindowOwner() - Method in interface repicea.gui.OwnedWindow
This method returns the owner of this window which should implement the Memorizable interface
getWindowOwner() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
getWindowOwner() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
getWindowSettings() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
getWindowSettings() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
getWindowSettings() - Method in interface repicea.io.IOUserInterface
This method returns the SettingMemory instance of the object if any.
getWindowSettings() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
getWindowSettings() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
getWindowSettings() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
getWoodPieces() - Method in class repicea.simulation.treelogger.TreeLogger
This method returns the SetMap object that contains the trees in keys and their associated wood pieces once they are processed.
getWoodProductEvolutionPerHa() - Method in class lerfob.carbonbalancetool.CATProductCompartment
 
getWoodSupplySetup() - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
getWoodVolumeM3() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns the volume (m3) of this wood piece without any expansion factor.
getWorkerID() - Method in class repicea.net.server.ClientThread
This method returns the ID of the worker.
getWorkspace() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
getWorkspace() - Method in interface repicea.io.Workspaceable
This method returns the workspace directory.
getWorkspace() - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
getWrappedInstance() - Method in interface lerfob.carbonbalancetool.CATUtility.ParameterWrapper
 
getWrappedInstance() - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
getXValues() - Method in class repicea.stats.integral.CompositeSimpsonRule
 
getXValues() - Method in class repicea.stats.integral.GaussHermiteQuadrature
 
getXValues() - Method in class repicea.stats.integral.GaussLegendreQuadrature
 
getXValues() - Method in class repicea.stats.integral.LaplacianApproximation
 
getXValues() - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method returns the x values for the numerical integration.
getXValues() - Method in class repicea.stats.integral.TrapezoidalRule
 
getYieldFromThisPiece(WoodPiece) - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
getYieldFromThisPiece(WoodPiece) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
getYieldFromThisPiece(WoodPiece) - Method in class repicea.simulation.treelogger.LogCategory
This method returns the yield of this piece, i.e.
getYVector() - Method in class repicea.stats.model.IndividualLikelihood
 
getYVector() - Method in class repicea.stats.model.IndividualLogLikelihood
 
getYVector() - Method in interface repicea.stats.model.LikelihoodCompatible
This method returns the vector of observed values.
GExportFieldDetails - Class in repicea.io
This class makes it possible to create objects that contain a field and its description.
GExportFieldDetails(String, Object) - Constructor for class repicea.io.GExportFieldDetails
Constructor Requires the field name and its value.
GExportFieldDetails(String, Object, int) - Constructor for class repicea.io.GExportFieldDetails
 
GExportRecord - Class in repicea.io
This class handles the records for export procedure.
GExportRecord() - Constructor for class repicea.io.GExportRecord
Constructor
GFileFilter - Class in repicea.io
This class implements the method for any file filter.
GFileFilter.FileType - Enum in repicea.io
 
ghq - Variable in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
ghq - Variable in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
ghq - Variable in class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
 
gOther - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
gradient - Variable in class repicea.stats.LinearStatisticalExpression
 
gradientCriterion - Variable in class repicea.math.optimizer.NewtonRaphsonOptimizer
 
gradientVector - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
gradientVectorUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
GRecordSet - Class in repicea.io
Deprecated.
GRecordSet() - Constructor for class repicea.io.GRecordSet
Deprecated.
General constructor for this class.
gridSearch(int, double, double, double) - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
This method scans the log likelihood function within a range of values for a particular parameter.
GrowthModel<S,T> - Interface in repicea.simulation
This interface defines the method to access growth model predictions.
GrowthStepLengthYrProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that the Stand instance provides the duration of the growth step in years.
guiInterface - Variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
guiInterface - Variable in class repicea.console.Trigger
 
guiInterface - Variable in class repicea.gui.components.REpiceaMatchSelector
 
guiInterface - Variable in class repicea.io.tools.ExportTool
Deprecated.
 
guiInterface - Variable in class repicea.io.tools.REpiceaExportTool
 
guiInterface - Variable in class repicea.simulation.processsystem.Processor
 
guiInterface - Variable in class repicea.simulation.processsystem.ProcessorButton
 
guiInterface - Variable in class repicea.simulation.processsystem.SystemManager
 

H

hasAlreadyBeenInstanciated - Static variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
hasBeenCancelled() - Method in class repicea.app.AbstractGenericTask
 
hasBeenCancelled() - Method in interface repicea.app.GenericTask
This method returns true if the method cancel() has been called.
hasBeenCancelled() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
This method returns true if the window has been cancelled.
hasBeenCancelled() - Method in class repicea.simulation.treelogger.TreeLogger
 
hasConverged - Variable in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
hasSubjectBeenTestedForBlups(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
hasSubProcessors() - Method in class repicea.simulation.processsystem.Processor
This method returns true if the processor has one or many subprocessors tied to itself or false otherwise.
HDRelationshipPredictor<Stand extends HDRelationshipStand,Tree extends HDRelationshipTree> - Class in repicea.simulation.hdrelationships
The HDRelationshipPredictor class is the basic class for all HD relationships based on linear mixed-effects modelling.
HDRelationshipPredictor(boolean) - Constructor for class repicea.simulation.hdrelationships.HDRelationshipPredictor
Preferred constructor.
HDRelationshipPredictor(boolean, boolean, boolean) - Constructor for class repicea.simulation.hdrelationships.HDRelationshipPredictor
Second constructor for greater flexibility
HDRelationshipPredictor.GaussianErrorTermForHeight - Class in repicea.simulation.hdrelationships
 
HDRelationshipPredictor.RegressionElements - Class in repicea.simulation.hdrelationships
 
HDRelationshipStand - Interface in repicea.simulation.hdrelationships
 
HDRelationshipTree - Interface in repicea.simulation.hdrelationships
 
HeightComparator - Class in repicea.simulation.allometrycalculator
The DbhComparator class implements the Comparator interface for HeightMProvider instances.
HeightComparator(boolean) - Constructor for class repicea.simulation.allometrycalculator.HeightComparator
General constructor.
HeightComparator() - Constructor for class repicea.simulation.allometrycalculator.HeightComparator
Default constructor for ascending comparison.
heightM - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
HeightMProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its own height.
HeightPredictor<Stand extends HDRelationshipStand,Tree extends HDRelationshipTree> - Interface in repicea.simulation.hdrelationships
This interface ensures the REpiceaPredictor instance can predict tree heights
help - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
help - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
helpAction() - Method in class repicea.gui.REpiceaDialog
 
helpAction() - Method in class repicea.gui.REpiceaFrame
 
helpDescription - Variable in class repicea.io.tools.ImportFieldElement
 
hessian - Variable in class repicea.stats.LinearStatisticalExpression
 
hessianMatrix - Variable in class repicea.math.optimizer.AbstractOptimizer
 
hessianMatrix - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
hessianMatrixUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
HierarchicalLevel - Class in repicea.simulation
The HierarchicalLevel class is used in the ModelBasedSimulator class.
HierarchicalLevel(String) - Constructor for class repicea.simulation.HierarchicalLevel
 
HierarchicalSpatialDataStructure - Interface in repicea.stats.data
 
HierarchicalStatisticalDataStructure - Interface in repicea.stats.data
 
hierarchicalStructure - Variable in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
hierarchicalStructure - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
HosmerLemeshowSubgroup() - Constructor for class repicea.stats.model.glm.HosmerLemeshowTest.HosmerLemeshowSubgroup
 
HosmerLemeshowTest - Class in repicea.stats.model.glm
 
HosmerLemeshowTest(GeneralizedLinearModel, int) - Constructor for class repicea.stats.model.glm.HosmerLemeshowTest
General constructor.
HosmerLemeshowTest(GeneralizedLinearModel) - Constructor for class repicea.stats.model.glm.HosmerLemeshowTest
Constructor with number of groups set to 10.
HosmerLemeshowTest.Couplet - Class in repicea.stats.model.glm
 
HosmerLemeshowTest.HosmerLemeshowSubgroup - Class in repicea.stats.model.glm
 
HTML - Static variable in class repicea.io.GFileFilter
 
hwpComboBox - Variable in class lerfob.carbonbalancetool.CATFrame
 

I

icon - Variable in class repicea.gui.dnd.DragGestureImpl
 
IconFactory - Class in repicea.gui.icons
The IconFactory class handles the icon loading and keeps the icons in memory to avoid double loading.
IconFactory() - Constructor for class repicea.gui.icons.IconFactory
 
Icons - Static variable in class repicea.simulation.processsystem.UISetup
 
id - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
id - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
IFE - Static variable in class repicea.io.GFileFilter
 
imagePath - Variable in class repicea.gui.genericwindows.REpiceaSplashWindow
 
importData(TransferHandler.TransferSupport) - Method in class repicea.gui.dnd.ReplaceTextTransferHandler
 
ImportFieldElement - Class in repicea.io.tools
This class contains the field details for the importation
ImportFieldElement(LevelProviderEnum, String, String, boolean, String, ImportFieldElement.FieldType) - Constructor for class repicea.io.tools.ImportFieldElement
General constructor
ImportFieldElement(LevelProviderEnum, int, ImportFieldElement.FieldType) - Constructor for class repicea.io.tools.ImportFieldElement
Short constructor for JUnit test
ImportFieldElement.FieldType - Enum in repicea.io.tools
 
ImportFieldManager - Class in repicea.io.tools
This class manages a list of ImportFieldElement.
ImportFieldManager(List<ImportFieldElement>, String...) - Constructor for class repicea.io.tools.ImportFieldManager
General constructor.
ImportFieldManagerDialog - Class in repicea.io.tools
ImportDialog is a dialog box that matches the fields of the input data set and the fields that are required for a particular model
ImportFieldManagerDialog(ImportFieldManager, Window) - Constructor for class repicea.io.tools.ImportFieldManagerDialog
Constructor.
ImportFieldManagerDialog.MessageID - Enum in repicea.io.tools
This enum contains all the messages that are displayed by this dialog.
include(RelativePathFile) - Method in class repicea.io.RelativePathFile
This method checks if this relative path file has a path that includes the file specified in parameter.
IndependentProcess - Interface in repicea.multiprocess
 
IndependentProcess.StateValue - Enum in repicea.multiprocess
 
IndependentProcessIncomingCommunicationWorker - Class in repicea.multiprocess
This static private class handles the object coming from an outer process through the standard input stream.
IndependentProcessIncomingCommunicationWorker() - Constructor for class repicea.multiprocess.IndependentProcessIncomingCommunicationWorker
 
Index<K,V> - Class in repicea.util
The Index class contains two synchronized map that makes it possible to get the index of a particular value.
Index() - Constructor for class repicea.util.Index
 
indexFieldType() - Method in class repicea.stats.data.DataSet
Indexes the different field types.
indexOf(T) - Method in class repicea.math.FastArrayList
 
IndividualLikelihood - Class in repicea.stats.model
The Likelihood class provides the basic services for all Likelihood classes
IndividualLikelihood(AbstractMathematicalFunction) - Constructor for class repicea.stats.model.IndividualLikelihood
 
individualLLK - Variable in class repicea.stats.model.glm.GeneralizedLinearModel
 
IndividualLogLikelihood - Class in repicea.stats.model
The LogLikelihood interface provides the basic services for all LogLikelihood classes.
IndividualLogLikelihood(IndividualLikelihood) - Constructor for class repicea.stats.model.IndividualLogLikelihood
 
init(List<CATCompatibleStand>) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
init() - Static method in class lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions
 
init() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
init() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel
 
init() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
init() - Method in class lerfob.predictor.dopalep.DopalepDbhIncrementPredictor
 
init() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
init() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
 
init() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
init() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
 
init() - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
init() - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
init() - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
init() - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
init() - Method in class lerfob.predictor.mathilde.mortality.MathildeImprovedMortalityPredictor
 
init() - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
init() - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
 
init() - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
 
init() - Method in class lerfob.predictor.mathilde.thinning.MathildeStandThinningPredictor
 
init() - Method in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
init() - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeStandThinningPredictor
Deprecated.
 
init() - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
 
init() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
 
init() - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Predictor
 
init() - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
 
init() - Method in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables
 
init() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
init() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
The init method instantiates the members of this class.
init() - Method in class repicea.io.tools.REpiceaExportToolDialog
The init method instantiates the members of this class.
init() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
init() - Method in class repicea.simulation.processsystem.ToolPanel
 
init() - Method in class repicea.simulation.REpiceaPredictor
This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.
init(Collection<?>) - Method in class repicea.simulation.treelogger.TreeLogger
This method initializes the TreeLogger instance by setting the collection of LoggableTree objects on which the logger has to work.
initGUIMode(Window, UseModeProvider.UseMode, String...) - Method in class repicea.io.tools.REpiceaRecordReader
This method initializes the RecordInstantiator object in GUI mode.
initGUIMode(UseModeProvider.UseMode, String...) - Method in class repicea.io.tools.REpiceaRecordReader
This method initializes the RecordInstantiator object in GUI mode with no owner.
initialize(TreeLogger, String, String) - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
initialize(StatisticalModel<?>, HierarchicalStatisticalDataStructure) - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
initialize(StatisticalModel<?>, HierarchicalStatisticalDataStructure) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
initialize(StatisticalModel<?>, HierarchicalStatisticalDataStructure) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
 
initialize(StatisticalModel<?>, HierarchicalStatisticalDataStructure) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
initializeComponents() - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
initializeComponents() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
initializeDefaultLogCategories() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class lerfob.treelogger.mathilde.MathildeTreeLoggerParameters
 
initializeDefaultLogCategories() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method serves to create a default list of selected tree log categories.
initializeFields() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
initializeFields() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
initializeFields() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
initializeLinkFunction(LinkFunction.Type) - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
initializeTool() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
Initializes CAT without parent window.
initializeTool(Window) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method initializes the carbon accounting tool either in script or in GUI mode.
initInScriptMode(ImportFieldManager) - Method in class repicea.io.tools.REpiceaRecordReader
For script mode.
initTreeLoggerComboBox() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
initUI() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
initUI() - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
initUI() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
initUI() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
initUI() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
initUI() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
initUI() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
initUI() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
initUI() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
 
initUI() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
Inits the GUI.
initUI() - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
initUI() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
initUI() - Method in class repicea.gui.genericwindows.REpiceaTipDialog
 
initUI() - Method in class repicea.gui.REpiceaDialog
This method creates the UI, i.e.
initUI() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
initUI() - Method in class repicea.io.tools.ImportFieldManagerDialog
Initializes the GUI.
initUI() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
initUI() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
initUI() - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
initUI() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
initUI() - Method in class repicea.simulation.processsystem.SystemPanel
 
initUI() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
InnerIterationStarted - Static variable in class repicea.math.optimizer.NewtonRaphsonOptimizer
 
innerPort - Variable in class repicea.net.server.ServerConfiguration
 
insertIntoTable(String) - Method in class repicea.io.javasql.StatementMaker
 
insertString(int, String, AttributeSet) - Method in class repicea.gui.components.NumberFormatFieldFactory.NumberFieldDocument
 
insertTab(String, Icon, Component, String, int) - Method in class repicea.gui.components.REpiceaTabbedPane
 
instantiateDefaultEstimator() - Method in class repicea.stats.model.AbstractStatisticalModel
This method defines the default optimizer which is to be specific to the derived classes.
instantiateDefaultEstimator() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
instantiateDefaultEstimator() - Method in class repicea.stats.model.lm.LinearModel
 
instantiateInternalSwingWorkerForRecordSet(Enum, REpiceaRecordSet) - Method in class lerfob.carbonbalancetool.io.CATExportTool
 
instantiateInternalSwingWorkerForRecordSet(Enum) - Method in class repicea.io.tools.ExportTool
Deprecated.
This abstract method instantiates an InternalSwingWorkerForRecordSet-derived class, which is supposed to handle the construction of the GRecordSet instance.
instantiateInternalSwingWorkerForRecordSet(Enum, REpiceaRecordSet) - Method in class repicea.io.tools.REpiceaExportTool
This abstract method instantiates an InternalSwingWorkerForRecordSet-derived class, which is supposed to handle the construction of the GRecordSet instance.
instantiatePlotAndTree(String, int, int, String, double, TreeStatusProvider.StatusClass, double, double, String, Double) - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationImportFromOtherApp
 
instantiatePlotAndTree(String, int, int, String, double, TreeStatusProvider.StatusClass, double, double, String, Double) - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
instantiatePreLink(SystemPanel) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton.DragGestureCreateEndOfLifeLinkListener
 
instantiatePreLink(SystemPanel) - Method in class repicea.simulation.processsystem.DragGestureCreateLinkListener
 
instantiateTreeLogger(boolean) - Method in class repicea.simulation.treelogger.TreeLoggerDescription
This method instantiate the tree logger.
instantiateVariables(TreeLoggerParameters<BasicLogCategory>) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
instantiateVariables(TreeLoggerParameters<DiameterBasedTreeLogCategory>) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParametersDialog
 
instantiateVariables(TreeLoggerParameters<P>) - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
InternalDragGestureImpl() - Constructor for class repicea.simulation.processsystem.DnDCompatibleButton.InternalDragGestureImpl
 
InternalDragGestureMoveComponentHandler(REpiceaScrollPane) - Constructor for class repicea.gui.components.REpiceaScrollPane.InternalDragGestureMoveComponentHandler
 
InternalEmbeddingPanel() - Constructor for class repicea.gui.dnd.DnDPanel.InternalEmbeddingPanel
 
InternalMouseMotionListener() - Constructor for class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
internalPanel - Variable in class repicea.gui.dnd.DnDPanel
 
InternalPanel() - Constructor for class repicea.gui.dnd.DnDPanel.InternalPanel
 
InternalSwingWorkerForRecordSet(Enum) - Constructor for class repicea.io.tools.ExportTool.InternalSwingWorkerForRecordSet
Deprecated.
 
InternalSwingWorkerForRecordSet(Enum, REpiceaRecordSet) - Constructor for class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
InternalTask(int) - Constructor for class repicea.io.tools.REpiceaRecordReader.InternalTask
 
INTERVAL_NESTED_IN_PLOT - Static variable in class repicea.simulation.HierarchicalLevel
 
IntervalNestedInPlotDefinition(MonteCarloSimulationCompliantObject, int) - Constructor for class repicea.simulation.REpiceaPredictor.IntervalNestedInPlotDefinition
 
InterventionPlannedProvider - Interface in repicea.simulation.covariateproviders.plotlevel
 
InterventionResultProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide information as whether or not it has just been harvested or thinned.
inverseGamma(double) - Static method in class repicea.math.GammaFunction
This method implements the approximation of the inverse Gamma function designed by David W.
IOUserInterface - Interface in repicea.io
The IOUserInterfaceableObject should be implemented by any REpiceaFrame or REpiceaDialog instance that offers the save/saveas/load options.
IOUserInterfaceableObject - Interface in repicea.io
The IOUserInterfaceableObject should be implemented by any object whose UI offers the save/saveas/load options.
isActualized() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
isADroughtGoingToOccur() - Method in interface lerfob.predictor.mathilde.mortality.MathildeMortalityStand
This method returns true if a drought is to occur in the upcoming time step.
isAppendFileEnabled() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
isAppendFileEnabled() - Method in class repicea.io.tools.REpiceaExportTool
 
isAWindstormGoingToOccur() - Method in interface lerfob.predictor.mathilde.mortality.MathildeMortalityStand
This method returns true if a catastrophic windstorm is to occur in the upcoming time step.
isBySpeciesEnabled() - Method in class lerfob.carbonbalancetool.CATOptionPanel
 
isCallerAJavaApplication - Variable in class repicea.net.server.AbstractServer
 
isCanceled() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
isCanceled() - Method in class repicea.io.tools.REpiceaExportTool
Returns true if the cancel button of the dialog has been pressed.
isCancelled - Variable in class repicea.app.AbstractGenericTask
Member isCancelled should be used in the doThisJob() method to ensure a proper cancellation.
isCancelled() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
This method returns true if the warning dialog has been cancelled.
isCancelled() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
This method returns true if the dialog has been cancelled.
isCancelOnClose() - Method in class repicea.gui.REpiceaDialog
 
isCancelOnClose() - Method in class repicea.gui.REpiceaFrame
 
isCancelOnClose() - Method in interface repicea.gui.REpiceaWindow
 
isCellEditable(int, int) - Method in class repicea.gui.components.REpiceaTableModel
 
isChangeAllowed - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
isCIToBeDisplayed(int, int) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
isClosed() - Method in interface repicea.net.SocketWrapper
This method returns true if the socket has been closed.
isClosed() - Method in class repicea.net.TCPSocketWrapper
 
isClosed() - Method in class repicea.net.UDPSocketWrapper
 
isColumnVector() - Method in class repicea.math.Matrix
This method checks if this is a column vector
isCommercialVolumeOverbark() - Method in interface lerfob.treelogger.douglasfirfcba.DouglasFCBALoggableTree
 
isCommercialVolumeOverbark() - Method in interface lerfob.treelogger.europeanbeech.EuropeanBeechBasicTree
 
isCommercialVolumeOverbark() - Method in interface lerfob.treelogger.maritimepine.MaritimePineBasicLoggableTree
 
isCommercialVolumeOverbark() - Method in interface lerfob.treelogger.mathilde.MathildeLoggableTree
 
isCommercialVolumeOverbark() - Method in interface repicea.simulation.covariateproviders.treelevel.CommercialVolumeM3Provider
 
isCompactClayInFirst50cm() - Method in interface lerfob.windstormdamagemodels.bockwindddamagemodel.BWDStand
This method returns true if there is a compact clay layer in the first 50 cm in depth.
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
isCompatibleWith(TreeLoggerCompatibilityCheck) - Method in class repicea.simulation.treelogger.TreeLogger
This method makes it possible to determine whether or not this TreeLogger class is compatible with the reference object
isConnected() - Method in class repicea.net.server.gui.ServerDialog
 
isConvergenceAchieved() - Method in class repicea.math.optimizer.AbstractOptimizer
 
isConvergenceAchieved() - Method in interface repicea.stats.estimators.Estimator
This method returns true if the estimator successfully estimated the parameters.
isConvergenceAchieved() - Method in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
isConvergenceAchieved() - Method in class repicea.stats.estimators.OLSEstimator
 
isConversionEnabled - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
isCorrect() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
 
isCorrect() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
isCorrect() - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
isCorrect() - Method in class lerfob.treelogger.mathilde.MathildeTreeLoggerParameters
 
isCorrect() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method checks if the parameters are correct for the treelogger.
isCorrectlyTerminated() - Method in class repicea.app.AbstractGenericTask
 
isCorrectlyTerminated() - Method in interface repicea.app.Executable
This method returns true if the task is correctly terminated or false otherwise.
isCorrectlyTerminated() - Method in class repicea.simulation.treelogger.TreeLogger
 
isCurrentJVMLaterThanThisVersion(String, boolean) - Static method in class repicea.lang.REpiceaSystem
This method returns true if the current version of the JVM is more recent than the parameter targetJVM
isCurrentJVMLaterThanThisVersion(String) - Static method in class repicea.lang.REpiceaSystem
This method returns true if the current version of the JVM is more recent than the parameter targetJVM.
isDiagonalMatrix() - Method in class repicea.math.Matrix
This method checks whether this matrix is a diagonal matrix, i.e.
isDisposableCheckBox - Variable in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
isDisposed() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
This method returns true if the lost carbon can be sent to the landfill site.
isDoNotShowAnymoreSelected() - Method in class repicea.gui.genericwindows.REpiceaTipDialog
This method returns true if the option "do not show anymore" has been selected.
isDowngradingEnabled - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
isDragGranted() - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.CustomizedREpiceaGUIPermission
 
isDragGranted() - Method in class repicea.gui.permissions.DefaultREpiceaGUIPermission
 
isDragGranted() - Method in interface repicea.gui.permissions.REpiceaGUIPermission
This method returns true if the drag is allowed for this component.
isDropGranted() - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.CustomizedREpiceaGUIPermission
 
isDropGranted() - Method in class repicea.gui.permissions.DefaultREpiceaGUIPermission
 
isDropGranted() - Method in interface repicea.gui.permissions.REpiceaGUIPermission
This method returns true if the drop is allowed on this component.
isEligible(LoggableTree) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
isEligible(LoggableTree) - Method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLogCategory
 
isEligible(LoggableTree) - Method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogCategory
 
isEnabled() - Method in class repicea.gui.dnd.DragGestureMoveComponentHandler
This method returns true if the handler is enabled or false otherwise.
isEnablingGranted() - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.CustomizedREpiceaGUIPermission
 
isEnablingGranted() - Method in class repicea.gui.permissions.DefaultREpiceaGUIPermission
 
isEnablingGranted() - Method in interface repicea.gui.permissions.REpiceaGUIPermission
This method returns true if the enabling is allowed.
isEqualToThisObservation(Observation) - Method in class repicea.stats.data.Observation
Checks if two observations have the same values.
isEvenAged() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
isEvenAged() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
isEvenAged() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
This method returns the nature of the CarbonToolCompatibleStand stand.
isFinalProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
isFlatLand() - Method in interface lerfob.windstormdamagemodels.bockwindddamagemodel.BWDStand
This method returns true if the stand is located on flat land.
isFromStump() - Method in class repicea.simulation.treelogger.LogCategory
This method returns true if the log category is actually extracted from stumps.
isGaussianQuadratureEnabled - Static variable in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
isGaussianQuadratureEnabled - Static variable in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
isGaussianQuadratureEnabled - Static variable in class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
 
isGoingToBeHarvested() - Method in interface lerfob.predictor.mathilde.mortality.MathildeMortalityStand
This method returns true if a cut was planned in the upcoming growth interval.
isGoingToBeHarvested() - Method in interface repicea.simulation.covariateproviders.plotlevel.InterventionPlannedProvider
This method returns true if the plot instance is going to be harvested in the upcoming time step.
isGroupingEnabled() - Method in class repicea.io.tools.REpiceaRecordReader
This method returns true if the grouping is enabled.
isGuiEnabled() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
isGuiEnabled() - Method in interface repicea.simulation.UseModeProvider
This method returns true if the use mode is set to GUI_MODE.
isInitialized() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method returns true if this CAT instance has been initialized or false otherwise
isInterceptModel - Variable in class repicea.stats.data.GenericStatisticalDataStructure
 
isInterceptModel() - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
isInterceptModel() - Method in interface repicea.stats.data.StatisticalDataStructure
This method returns true if the model has an intercept or false otherwise.
isInterventionResult() - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
isInterventionResult() - Method in interface repicea.simulation.covariateproviders.plotlevel.InterventionResultProvider
This method returns true if the stand has just been harvested or thinned.
isLandfillProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
isLandfillSite() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
isLeftInForestModel() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
isLeftInForestProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
isLicenseAccepted() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
isMarketAttributed() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
isMeantForEnergyProduction() - Method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature.UseClass
 
isMergeableEstimate(Estimate<?>) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
 
isMergeableEstimate(Estimate<?>) - Method in class repicea.stats.estimates.Estimate
This method checks if the two point estimates are compatible.
isMergeableEstimate(Estimate<?>) - Method in class repicea.stats.estimates.MonteCarloEstimate
 
isMergeableEstimate(Estimate<?>) - Method in class repicea.stats.estimates.PointEstimate
 
isMergeableEstimate(Estimate<?>) - Method in class repicea.stats.estimates.PopulationTotalEstimate
 
isModelStochastic - Variable in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
isModelStochastic() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
isMultivariate() - Method in interface repicea.stats.Distribution
This method returns true if the GaussianFunction instance is multivariate.
isMultivariate() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.StudentTDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.UniformDistribution
 
isMultivariate() - Method in class repicea.stats.distributions.UnknownDistribution
 
iso8859Encoding - Variable in class repicea.console.MainDialog
 
isOptional - Variable in class repicea.io.tools.ImportFieldElement
 
isParameterDialogCanceled() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method returns false if the parameter initialization has been aborted in GUI mode.
isParametersVariabilityEnabled - Variable in class repicea.simulation.SensitivityAnalysisParameter
 
isParametric() - Method in interface repicea.stats.Distribution
This method returns true if the distribution is parametric or false otherwise.
isParametric() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
isParametric() - Method in class repicea.stats.distributions.ChiSquaredDistribution
 
isParametric() - Method in class repicea.stats.distributions.EmpiricalDistribution
 
isParametric() - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
isParametric() - Method in class repicea.stats.distributions.StudentTDistribution
 
isParametric() - Method in class repicea.stats.distributions.UniformDistribution
 
isParametric() - Method in class repicea.stats.distributions.UnknownDistribution
 
isPartOfEndlessLoop() - Method in class repicea.simulation.processsystem.Processor
 
isPopulationSizeKnown() - Method in class repicea.stats.estimates.PointEstimate
 
isPopupInGuiInterfaceEnabled() - Method in class repicea.io.tools.ImportFieldManager
 
isPositiveDefinite() - Method in class repicea.math.Matrix
This method checks if the matrix is positive definite.
isPrimaryCompartment() - Method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
 
isPrimaryProcessor() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
isPrimitive(Class<?>) - Static method in class repicea.lang.reflect.ReflectUtility
This method returns true if the class is primitive or a wrapper for a primitive.
isRandomEffectsVariabilityEnabled - Variable in class repicea.simulation.REpiceaPredictor
 
isResidualVariabilityEnabled - Variable in class repicea.simulation.REpiceaPredictor
 
isRockInTheFirst50cm() - Method in interface lerfob.windstormdamagemodels.bockwindddamagemodel.BWDStand
This method returns true if there are some rocks in the first 50 cm in depth.
isRowVector() - Method in class repicea.math.Matrix
This method checks if this is a row vector
isRunningOnWindows() - Static method in class repicea.lang.REpiceaSystem
Returns true if the OS is Windows or false otherwise.
isSaveMemoryEnabled() - Method in class repicea.simulation.treelogger.TreeLogger
This method checks if the logger is operating in safe memory mode.
isSBWDefoliated() - Method in interface repicea.simulation.covariateproviders.plotlevel.SpruceBudwormDefoliatedProvider
This method returns true if the stand has suffered from a spruce budworm (SBW) outbreak.
isSelectionGranted() - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.CustomizedREpiceaGUIPermission
 
isSelectionGranted() - Method in class repicea.gui.permissions.DefaultREpiceaGUIPermission
 
isSelectionGranted() - Method in interface repicea.gui.permissions.REpiceaGUIPermission
This method returns true if the selection is allowed.
isSentToAnotherMarket() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
isShuttedDown() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method returns true if CAT has been shutted down or false otherwise.
isSprayed() - Method in interface repicea.simulation.covariateproviders.plotlevel.SprayedAgainstDefoliatorProvider
This method returns a boolean if the stand is going to be sprayed in the upcoming interval.
isSquare() - Method in class repicea.math.Matrix
This method checks if this is a square matrix
isStochastic() - Method in interface repicea.simulation.covariateproviders.plotlevel.StochasticInformationProvider
This method returns true if the instance is running in stochastic mode or false it is in deterministic mode.
isStochasticModeEnabled() - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
 
isStochasticModeEnabled - Variable in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
isStructured() - Method in class repicea.stats.distributions.CenteredGaussianDistribution
 
isSymmetric() - Method in class repicea.math.Matrix
This method tests whether the matrix is symmetric.
isSystemResource() - Method in class repicea.io.FormatReader
This method returns true if the reader is based on a system resource or false otherwise.
isTerminal - Variable in class repicea.simulation.processsystem.Processor
 
isTerminalProcessor() - Method in class repicea.simulation.processsystem.Processor
This method returns true if the processor is a final processor, which means it cannot send anything to subprocessors.
isTheOwnerOfThisClass(Class<?>) - Method in class repicea.net.RemoteListener
This method returns true if the owner of this remote listener is of the class of the clazz parameter.
isThereAnyElementDifferentFrom(double[][], double) - Static method in class repicea.util.ObjectUtility
 
isThereAnyElementDifferentFrom(double[], double) - Static method in class repicea.util.ObjectUtility
 
isThereAnyHierarchicalStructure() - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
isThereAnyHierarchicalStructure() - Method in interface repicea.stats.data.HierarchicalStatisticalDataStructure
Return true if the hierarchical structure has been set or false otherwise.
isThereAnyNaN() - Method in class repicea.stats.estimates.ConfidenceInterval
This method returns true if one of the bound of the confidence intervals contains a NaN
isThereAnyOccurrence() - Method in class repicea.simulation.disturbances.DisturbanceOccurrences
Returns true if there is at least one occurrence.
isTheSameDimension(Matrix) - Method in class repicea.math.Matrix
This method checks whether or not this and m have the same dimensions
isThisFieldAvailable(Enum<?>, Object[]) - Method in class repicea.io.tools.REpiceaRecordReader
This method returns true if the field is available.
isThisPlotAffected(MonteCarloSimulationCompliantObject) - Method in interface repicea.simulation.disturbances.DisturbanceAffectedProvider
Returns true if the plot if affected by the disturbance provided that it has occurred
isThisPlotAffected(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.disturbances.DisturbanceOccurrences
This method checks whether a particular plot is affected by the disturbance.
isTotalVolumeOverbark() - Method in interface repicea.simulation.covariateproviders.treelevel.TotalVolumeM3Provider
 
isUnivariate() - Method in interface repicea.stats.Distribution
Returns true if the GaussianFunction instance is univariate.
isUpperBound() - Method in class repicea.stats.distributions.BasicBound
 
isUserValidated() - Method in class repicea.io.tools.ImportFieldManager
 
isValid() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method determines whether the designer is valid or not
isValid() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
isValid() - Method in class lerfob.carbonbalancetool.CATSettings
This method returns true if the settings are valid.
isValid() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
isValid() - Method in interface lerfob.carbonbalancetool.CATSimulationResult
Returns false if the simulation went wrong at some place.
isValid() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
This method checks if the production line is valid.
isValid() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
isValid() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
This method returns true if the ProductionProcessorManager instance is valid or false otherwise.
isValid() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
isValid() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
This method returns true if the WoodPieceDispatcher is operational.
isValid() - Method in class repicea.gui.CommonGuiUtility.FileChooserOutput
This method returns true if the JFileChooser has not been cancelled.
isValid() - Method in class repicea.simulation.processsystem.Processor
This method checks if the wood processor is valid as well as all its subprocessors.
isValidated() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
isValidated() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
isVerbose() - Method in class repicea.app.AbstractGenericTask
 
isVerbose() - Method in interface repicea.app.GenericTask
This method returns true if the task displays messages.
isVerbose() - Method in class repicea.simulation.treelogger.TreeLogger
 
isVerboseEnabled() - Method in class lerfob.carbonbalancetool.CATSettings
 
isVerboseEnabled() - Method in class repicea.math.optimizer.AbstractOptimizer
 
isVisible() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
isVisible() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
isVisible() - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
isVisible() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
isVisible() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
isVisible() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
isVisible() - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
isVisible() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
 
isVisible() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
isVisible() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
isVisible() - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
isVisible() - Method in class lerfob.treelogger.mathilde.MathildeTreeLoggerParameters
 
isVisible() - Method in class repicea.app.Logger
 
isVisible() - Method in class repicea.console.Trigger
 
isVisible() - Method in class repicea.gui.components.REpiceaMatchSelector
 
isVisible() - Method in interface repicea.gui.REpiceaUIObject
This method returns true if the GUI is visible.
isVisible() - Method in interface repicea.gui.REpiceaUIObjectWithParent
This method returns true if the GUI is visible.
isVisible() - Method in class repicea.io.tools.ExportTool
Deprecated.
 
isVisible() - Method in class repicea.io.tools.ImportFieldElement
 
isVisible() - Method in class repicea.io.tools.ImportFieldManager
 
isVisible() - Method in class repicea.io.tools.REpiceaExportTool
 
isVisible() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
isVisible() - Method in class repicea.simulation.processsystem.Processor
 
isVisible() - Method in class repicea.simulation.processsystem.SystemManager
 
isVisible() - Method in class repicea.stats.data.DataSet
 
isWarningDisabled() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
isWithBark() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns true if the piece was calculated with bark or false otherwise.
isWithPith() - Method in class repicea.simulation.treelogger.WoodPiece
This method returns true if the piece was calculated with pith or false otherwise.
isWorkSpaceChangeableInGUI() - Static method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method returns true if the set workspace option is enabled or false otherwise.
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.CATFrame
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.CATOptionPanel
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
itemStateChanged(ItemEvent) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
itemStateChanged(ItemEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
 
itemStateChanged(ItemEvent) - Method in class repicea.console.MainDialog
 
itemStateChanged(ItemEvent) - Method in class repicea.gui.REpiceaLookAndFeelMenu
 
itemStateChanged(ItemEvent) - Method in class repicea.simulation.processsystem.SystemManagerDialog
 

J

JackknifeEstimate - Class in repicea.stats.estimates
The JackknifeEstimate class implements the variance calculation typical of delete-d Jackknife variance estimator.
JackknifeEstimate(int, int) - Constructor for class repicea.stats.estimates.JackknifeEstimate
Constructor.
JAVACLASS - Static variable in class repicea.io.GFileFilter
 
JavaLocalGatewayServer - Class in repicea.net.server
The JavaLocalGatewayServer class is a one-to-one local server that makes it possible to create objects and to execute methods in Java from a non-Java application.
JavaLocalGatewayServer(ServerConfiguration, REpiceaCodeTranslator) - Constructor for class repicea.net.server.JavaLocalGatewayServer
Constructor.
JavaLocalGatewayServer(ServerConfiguration, REpiceaCodeTranslator, boolean) - Constructor for class repicea.net.server.JavaLocalGatewayServer
Hidden constructor for test purpose
JavaProcess - Class in repicea.multiprocess
This class has a design similar to the SwingWorker class.
JavaProcess(List<String>, File, Map<String, String>) - Constructor for class repicea.multiprocess.JavaProcess
General constructor.
JavaProcess(List<String>, File) - Constructor for class repicea.multiprocess.JavaProcess
Sub constructor with only the commands and the working directory.
JavaProcess(List<String>) - Constructor for class repicea.multiprocess.JavaProcess
Sub constructor with the commands only.
JavaProcess(List<String>, Map<String, String>) - Constructor for class repicea.multiprocess.JavaProcess
Sub constructor with only the commands and the environment.
JavaProcess.JVM_OPTION - Enum in repicea.multiprocess
 
javaProcessWrapper - Variable in class repicea.console.MainDialog
 
JavaProcessWrapper - Class in repicea.multiprocess
 
JavaProcessWrapper(String, List<String>, File) - Constructor for class repicea.multiprocess.JavaProcessWrapper
 
JavaWrapperToPrimitiveMap - Static variable in class repicea.lang.reflect.ReflectUtility
 
JustLoaded - Static variable in class repicea.gui.REpiceaAWTProperty
 
JustSaved - Static variable in class repicea.gui.REpiceaAWTProperty
 

K

KeyEventHandler(ToolButton) - Constructor for class repicea.simulation.processsystem.ToolPanel.KeyEventHandler
 

L

LABEL - Static variable in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
label - Variable in class repicea.simulation.processsystem.ProcessorButton
 
LandfillCarbonUnit - Class in lerfob.carbonbalancetool.productionlines
 
LandfillCarbonUnit(int, String, LandfillCarbonUnitFeature, AmountMap<CarbonUnit.Element>, String, CarbonUnit.CarbonUnitStatus) - Constructor for class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnit
Constructor.
LandfillCarbonUnitFeature - Class in lerfob.carbonbalancetool.productionlines
 
LandfillCarbonUnitFeature(AbstractProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
The empty constructor is handled by the interface.
LandfillCarbonUnitFeature.LandfillType - Enum in lerfob.carbonbalancetool.productionlines
 
LandfillCarbonUnitFeaturePanel - Class in lerfob.carbonbalancetool.productionlines
 
LandfillCarbonUnitFeaturePanel(LandfillCarbonUnitFeature) - Constructor for class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
LandfillCarbonUnitFeaturePanel.MessageID - Enum in lerfob.carbonbalancetool.productionlines
 
LandfillProcessor - Class in lerfob.carbonbalancetool.productionlines
The LandfillProcessor class a specific implementation of Processor for landfill sites.
LandfillProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.LandfillProcessor
Constructor.
LandfillProcessor.LandfillProcessorButton - Class in lerfob.carbonbalancetool.productionlines
The LandfillProcessorButton has a specific icon for GUI.
LandfillProcessorButton(SystemPanel, AbstractProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.LandfillProcessor.LandfillProcessorButton
 
landFillTypeComboBox - Variable in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
LandOwnershipProvider - Interface in repicea.simulation.covariateproviders.plotlevel
 
LandOwnershipProvider.LandOwnership - Enum in repicea.simulation.covariateproviders.plotlevel
 
LandUseProvider - Interface in repicea.simulation.covariateproviders.plotlevel
The LandUseProvider interface ensures that the plot instance knows its land use.
LandUseProvider.LandUse - Enum in repicea.simulation.covariateproviders.plotlevel
 
languageEn - Variable in class repicea.console.MainDialog
 
languageFr - Variable in class repicea.console.MainDialog
 
languageMenu - Variable in class repicea.console.MainDialog
 
LaplacianApproximation - Class in repicea.stats.integral
The LaplacianApproximation class implements the Laplace approximation for integrals.
LaplacianApproximation() - Constructor for class repicea.stats.integral.LaplacianApproximation
Constructor.
latinName - Variable in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
latitude - Variable in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator.PlotCoordinates
 
LawOfTotalVarianceMonteCarloEstimate - Class in repicea.stats.estimates
The LawOfTotalVarianceMonteCarloEstimate is a Monte Carlo estimate for random variable.
LawOfTotalVarianceMonteCarloEstimate() - Constructor for class repicea.stats.estimates.LawOfTotalVarianceMonteCarloEstimate
Constructor.
layoutContainer(Container) - Method in class lerfob.carbonbalancetool.productionlines.ExtendedSystemLayout
 
layoutContainer(Container) - Method in class repicea.simulation.processsystem.SystemLayout
 
LeftHandSideProcessor - Class in lerfob.carbonbalancetool.productionlines
 
LeftHandSideProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor
 
LeftHandSideProcessor.CustomizedREpiceaGUIPermission - Class in lerfob.carbonbalancetool.productionlines
 
LeftHandSideProcessor.LeftHandSideProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
LeftHandSideProcessorButton(SystemPanel, Processor) - Constructor for class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.LeftHandSideProcessorButton
 
LEFTINFOREST_PIECE - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
LeftInForestProcessor - Class in lerfob.carbonbalancetool.productionlines
The LeftInForestProcessor class is a specific implementation of Processor for dead organic matter left in the forest.
LeftInForestProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.LeftInForestProcessor
Constructor.
LeftInForestProcessor.LeftInForestProcessorButton - Class in lerfob.carbonbalancetool.productionlines
The LeftInForestProcessorButton class is the button with a particular icon for better identification in the GUI
LeftInForestProcessorButton(SystemPanel, AbstractProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.LeftInForestProcessor.LeftInForestProcessorButton
 
leftThisPieceInTheForest(int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method leaves a wood piece in the forest (for instance the roots).
lerfob.allometricrelationships - package lerfob.allometricrelationships
 
lerfob.app - package lerfob.app
 
lerfob.biomassmodel.drexhagecolin - package lerfob.biomassmodel.drexhagecolin
 
lerfob.carbonbalancetool - package lerfob.carbonbalancetool
 
lerfob.carbonbalancetool.biomassparameters - package lerfob.carbonbalancetool.biomassparameters
 
lerfob.carbonbalancetool.catdiameterbasedtreelogger - package lerfob.carbonbalancetool.catdiameterbasedtreelogger
 
lerfob.carbonbalancetool.gui - package lerfob.carbonbalancetool.gui
 
lerfob.carbonbalancetool.io - package lerfob.carbonbalancetool.io
 
lerfob.carbonbalancetool.productionlines - package lerfob.carbonbalancetool.productionlines
 
lerfob.carbonbalancetool.productionlines.combustion - package lerfob.carbonbalancetool.productionlines.combustion
 
lerfob.carbonbalancetool.pythonaccess - package lerfob.carbonbalancetool.pythonaccess
 
lerfob.carbonbalancetool.sensitivityanalysis - package lerfob.carbonbalancetool.sensitivityanalysis
 
lerfob.carbonbalancetool.woodpiecedispatcher - package lerfob.carbonbalancetool.woodpiecedispatcher
 
lerfob.fagacees - package lerfob.fagacees
 
lerfob.predictor - package lerfob.predictor
 
lerfob.predictor.dopalep - package lerfob.predictor.dopalep
 
lerfob.predictor.hdrelationships - package lerfob.predictor.hdrelationships
 
lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014 - package lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014
 
lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018 - package lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018
 
lerfob.predictor.mathilde - package lerfob.predictor.mathilde
 
lerfob.predictor.mathilde.climate - package lerfob.predictor.mathilde.climate
 
lerfob.predictor.mathilde.climate.formerversion - package lerfob.predictor.mathilde.climate.formerversion
 
lerfob.predictor.mathilde.diameterincrement - package lerfob.predictor.mathilde.diameterincrement
 
lerfob.predictor.mathilde.mortality - package lerfob.predictor.mathilde.mortality
 
lerfob.predictor.mathilde.recruitment - package lerfob.predictor.mathilde.recruitment
 
lerfob.predictor.mathilde.thinning - package lerfob.predictor.mathilde.thinning
 
lerfob.predictor.mathilde.thinningbeta - package lerfob.predictor.mathilde.thinningbeta
 
lerfob.predictor.thinners.frenchnfithinner2018 - package lerfob.predictor.thinners.frenchnfithinner2018
 
lerfob.predictor.volume.frenchcommercialvolume2014 - package lerfob.predictor.volume.frenchcommercialvolume2014
 
lerfob.predictor.volume.frenchcommercialvolume2020 - package lerfob.predictor.volume.frenchcommercialvolume2020
 
lerfob.simulation.covariateproviders.plotlevel - package lerfob.simulation.covariateproviders.plotlevel
 
lerfob.treelogger.basictreelogger - package lerfob.treelogger.basictreelogger
 
lerfob.treelogger.diameterbasedtreelogger - package lerfob.treelogger.diameterbasedtreelogger
 
lerfob.treelogger.douglasfirfcba - package lerfob.treelogger.douglasfirfcba
 
lerfob.treelogger.europeanbeech - package lerfob.treelogger.europeanbeech
 
lerfob.treelogger.maritimepine - package lerfob.treelogger.maritimepine
 
lerfob.treelogger.mathilde - package lerfob.treelogger.mathilde
 
lerfob.windstormdamagemodels.awsmodel - package lerfob.windstormdamagemodels.awsmodel
 
lerfob.windstormdamagemodels.bockwindddamagemodel - package lerfob.windstormdamagemodels.bockwindddamagemodel
 
LerfobForesttools - Class in lerfob.app
This class is the main entry point for the application.
LerfobForesttools() - Constructor for class lerfob.app.LerfobForesttools
 
LERFOBJARSVNAppVersion - Class in lerfob.app
This class retrieves information on the version and other features of the lerfob-forestools.jar application.
LevelProviderEnum - Interface in repicea.io.tools
The LevelProviderEnum interface should be implemented by any field enum.
levels - Variable in class repicea.stats.model.glm.copula.CopulaExpression
 
LifeCycleAnalysis - Class in lerfob.carbonbalancetool.productionlines
Deprecated.
LifeCycleAnalysis(LifeCycleAnalysis.ReferenceLCA) - Constructor for class lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis
Deprecated.
This constructor builds independent life cycle analysis from the ReferenceLCA enum.
LifeCycleAnalysis.ReferenceLCA - Enum in lerfob.carbonbalancetool.productionlines
Deprecated.
 
lifetimeModeList - Variable in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
LightAllometryCalculableTree - Interface in repicea.simulation.allometrycalculator
The LightAllometryCalculableTree interface implements the basic methods for calculating the number of stems per hectare, the basal area per hectare and the mean quadratic diameter.
LikelihoodCompatible - Interface in repicea.stats.model
 
LikelihoodGLM - Class in repicea.stats.model.glm
 
LikelihoodGLM(LinkFunction) - Constructor for class repicea.stats.model.glm.LikelihoodGLM
 
LikelihoodValue(Matrix, double) - Constructor for class repicea.stats.model.glm.copula.FGMCopulaGLModel.LikelihoodValue
 
LinearModel - Class in repicea.stats.model.lm
The LinearModel is a traditional model fitted with an Ordinary Least Squares estimator.
LinearModel(DataSet, String) - Constructor for class repicea.stats.model.lm.LinearModel
Constructor.
LinearStatisticalExpression - Class in repicea.stats
This class specifies a linear term in the form x * beta.
LinearStatisticalExpression() - Constructor for class repicea.stats.LinearStatisticalExpression
 
LinkedGaussianEstimate - Class in repicea.stats.estimates
 
LinkedGaussianEstimate(GaussianEstimate, GaussianEstimate, double) - Constructor for class repicea.stats.estimates.LinkedGaussianEstimate
 
linkFunction - Variable in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
linkFunction - Variable in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
linkFunction - Variable in class repicea.stats.model.glm.LikelihoodGLM
 
LinkFunction - Class in repicea.stats.model.glm
The LinkFunction class is essential to any generalized linear model.
LinkFunction(LinkFunction.Type) - Constructor for class repicea.stats.model.glm.LinkFunction
Public constructor.
LinkFunction(LinkFunction.Type, AbstractMathematicalFunction) - Constructor for class repicea.stats.model.glm.LinkFunction
Public constructor.
LinkFunction.Type - Enum in repicea.stats.model.glm
 
linkFunctionType - Variable in class repicea.stats.model.glm.GeneralizedLinearModel
 
listener - Variable in class repicea.util.AbstractEventExecutor
 
listeners - Variable in class repicea.simulation.REpiceaPredictor
 
listeners - Variable in class repicea.simulation.treelogger.TreeLogger
 
listenTo() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
listenTo() - Method in class lerfob.carbonbalancetool.CATFrame
 
listenTo() - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
listenTo() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
listenTo() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
listenTo() - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
listenTo() - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
listenTo() - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
listenTo() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
listenTo() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
listenTo() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
listenTo() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
listenTo() - Method in class repicea.console.MainDialog
 
listenTo() - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
listenTo() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
listenTo() - Method in class repicea.gui.components.REpiceaSlider
 
listenTo() - Method in class repicea.gui.components.REpiceaSliderGroup
 
listenTo() - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
listenTo() - Method in class repicea.gui.dnd.DnDPanel.InternalPanel
 
listenTo() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
listenTo() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
 
listenTo() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
listenTo() - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
listenTo() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
listenTo() - Method in class repicea.gui.genericwindows.REpiceaTipDialog
 
listenTo() - Method in class repicea.gui.REpiceaPanel
 
listenTo() - Method in interface repicea.gui.SynchronizedListening
This method specifies who is listening to whom.
listenTo() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
listenTo() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
listenTo() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
listenTo() - Method in class repicea.net.server.gui.ServerDialog
 
listenTo() - Method in class repicea.serial.REpiceaMemorizerHandler
 
listenTo() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
listenTo() - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
listenTo() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
listenTo() - Method in class repicea.simulation.processsystem.ToolPanel
 
listenTo() - Method in class repicea.simulation.treelogger.LogCategoryPanel
 
listenTo() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
listenToClients() - Method in class repicea.net.server.AbstractServer
This method starts the worker thread, which listens to the clients in the queue.
ListManager<P extends REpiceaUIObject> - Interface in repicea.gui
A ListManager object handles a list of objects.
littleEndian(short) - Static method in class repicea.io.javadbf.Utils
 
littleEndian(int) - Static method in class repicea.io.javadbf.Utils
 
llk - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
llkUptoDate - Variable in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
LnDbhCmPlus1Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide the natural log of its own dbh + 1.
LnDbhCmProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide the natural log of its own dbh.
load(String) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
load(String) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
load(String) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
load(String) - Method in class repicea.gui.components.REpiceaMatchSelector
 
load(String) - Method in interface repicea.io.Loadable
This method makes it possible to load information from a file.
load(String) - Method in class repicea.io.tools.ImportFieldManager
 
load(String) - Method in class repicea.simulation.processsystem.SystemManager
 
load - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
load() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
load(String) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
Loadable - Interface in repicea.io
 
loadAction() - Method in class repicea.io.REpiceaIOFileHandlerUI
This method loads a previously serialized instance.
loadFrom(AbstractDesigner<C>) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
loadFrom(AbstractDesigner<ProductionLine>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
loadFrom(AbstractDesigner<LogCategoryDispatcher>) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
loadFromFile(String) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
loadFromFile(String) - Method in interface repicea.simulation.Parameterizable
Deprecated.
This method reads the parameters of the instance in a file.
loadFromFile(String) - Static method in class repicea.simulation.treelogger.TreeLoggerParameters
This method creates a TreeLoggerParameters instance from a previously saved .xml file
loadFromFile(String) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
loadMatrixFromFile(String) - Static method in class repicea.simulation.ParameterLoader
This method reads the file and retrieve a matrix of parameters.
loadSettings() - Method in class repicea.app.SettingMemory
This method deserializes the settings.
loadSettings() - Method in class repicea.console.Trigger
 
loadVectorFromFile(int, String) - Static method in class repicea.simulation.ParameterLoader
This method reads a file and retrieve a vector of parameters.
loadVectorFromFile(String) - Static method in class repicea.simulation.ParameterLoader
This method reads a file and retrieve a vector of parameters.
LocalTransferable - Static variable in class repicea.gui.dnd.DragGestureImpl
 
lock - Variable in class repicea.app.SettingMemory
 
lockEngine() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
lockEngine(long) - Method in class repicea.app.AbstractGenericEngine
This method locks the engine while the interface can be doing something else.
lockEngine() - Method in class repicea.app.AbstractGenericEngine
This method locks the engine while the interface can be doing something else.
logCategory - Variable in class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor
 
LogCategory - Class in repicea.simulation.treelogger
This abstract class ensures that any TreeLogCategory-derived object has at least (1) a name, (2) a list of end use products and (3) a method that returns the yield of the piece.
LogCategory(String, boolean) - Constructor for class repicea.simulation.treelogger.LogCategory
General constructor for all the TreeLogCategory-derived classes.
LogCategory() - Constructor for class repicea.simulation.treelogger.LogCategory
Default instantiation.
logCategory - Variable in class repicea.simulation.treelogger.LogCategoryPanel
 
LogCategoryDispatcher - Class in lerfob.carbonbalancetool.woodpiecedispatcher
Deprecated.
LogCategoryDispatcher(WoodPieceDispatcher, String) - Constructor for class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
Constructor.
logCategoryList - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
LogCategoryPanel<T extends LogCategory> - Class in repicea.simulation.treelogger
The TreeLogCategoryPanel class is the main class for any panel that allows the configuration of a specific TreeLogCategory.
LogCategoryPanel(T) - Constructor for class repicea.simulation.treelogger.LogCategoryPanel
General constructor for all the TreeLogCategoryPanel-derived classes.
LogCategoryPanel.MessageID - Enum in repicea.simulation.treelogger
This enum variable contains the common labels for a TreeLogCategoryPanel.
LogCategoryProcessor - Class in lerfob.carbonbalancetool.productionlines
The LogCategoryProcessor is a specific implementation of Processor for a particular log grade category that comes out of TreeLogger instance.
LogCategoryProcessor(LogCategory) - Constructor for class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor
Constructor.
LogCategoryProcessor.LogCategoryProcessorButton - Class in lerfob.carbonbalancetool.productionlines
The LogCategoryProcessorButton class is the GUI implementation for LogCategoryProcessor.
LogCategoryProcessorButton(SystemPanel, LogCategoryProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.LogCategoryProcessor.LogCategoryProcessorButton
Constructor.
logCategoryProcessors - Variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
LogCategoryToMarketMatch - Class in lerfob.carbonbalancetool.woodpiecedispatcher
Deprecated.
LogCategoryToMarketMatch(LogCategoryDispatcher) - Constructor for class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
Constructor.
LogFunctionWrapper - Class in repicea.math
The LogFunctionWrapper class is a specific AbstractMathematicalFunctionWrapper for log functions.
LogFunctionWrapper(AbstractMathematicalFunction) - Constructor for class repicea.math.LogFunctionWrapper
Constructor.
LoggableTree - Interface in repicea.simulation.treelogger
This interface applies at the tree level and only serves to determine the object that are compatible with the tree logger in the repicea-foresttools library.
logGamma(double) - Static method in class repicea.math.GammaFunction
This method returns the logarithm of the Gamma function.
logger - Variable in class repicea.app.AbstractGenericEngine
 
Logger - Class in repicea.app
The Logger class includes a JTextArea instance in which any OutputStream can write.
Logger(int) - Constructor for class repicea.app.Logger
Constructor.
Logger() - Constructor for class repicea.app.Logger
Default constructor with 40 rows.
logger - Variable in class repicea.console.MainDialog
 
logger - Variable in class repicea.console.Trigger
 
loggerTask - Variable in class repicea.simulation.treelogger.TreeLogger
 
logGrade - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
LogGradeAdded - Static variable in class repicea.simulation.treelogger.TreeLoggerAWTProperty
 
logGradeGoDown - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
logGradeGoUp - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
logGradePriorityChangeEnabled - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
LogGradeRemoved - Static variable in class repicea.simulation.treelogger.TreeLoggerAWTProperty
 
logMatrix() - Method in class repicea.math.Matrix
Compute the logarithm of the elements of this matrix
logThisTree(LoggableTree) - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLogger
 
logThisTree(LoggableTree) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
logThisTree(LoggableTree) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
logThisTree(DouglasFCBALoggableTree) - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
logThisTree(MathildeLoggableTree) - Method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
logThisTree(Tree) - Method in class repicea.simulation.treelogger.TreeLogger
This method process the trees into logs.
logTrees() - Method in class repicea.simulation.treelogger.TreeLogger
This method instantiate a TreeLoggerTask and run this task.
longitude - Variable in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator.PlotCoordinates
 
longLivedSlider - Variable in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
LowQualityPercentageWithinHighQualityGrade - Static variable in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogger
 

M

m_afData - Variable in class repicea.math.Matrix
 
m_iCols - Variable in class repicea.math.Matrix
 
m_iRows - Variable in class repicea.math.Matrix
 
main(String[]) - Static method in class lerfob.allometricrelationships.BouchonVolumeEquations
 
main(String[]) - Static method in class lerfob.app.LerfobForesttools
 
main(String[]) - Static method in class lerfob.app.LERFOBJARSVNAppVersion
 
main(String[]) - Static method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
main(String[]) - Static method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
main(String[]) - Static method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters
 
main(String[]) - Static method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
main(String[]) - Static method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
main(String[]) - Static method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
main(String[]) - Static method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
Start method for connection to Python.
main(String[]) - Static method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
main(String[]) - Static method in class lerfob.predictor.dopalep.DopalepDbhIncrementPredictor
 
main(String[]) - Static method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
 
main(String[]) - Static method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters
 
main(String[]) - Static method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters
 
main(String[]) - Static method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
main(String[]) - Static method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters
 
main(String[]) - Static method in class lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters
 
main(String[]) - Static method in class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters
 
main(String[]) - Static method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
main(String[]) - Static method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
 
main(String[]) - Static method in class repicea.app.REpiceaJARSVNAppVersion
 
main(String[]) - Static method in class repicea.gui.components.REpiceaMatchSelector
 
main(String[]) - Static method in class repicea.gui.components.REpiceaTabbedPane
 
main(String[]) - Static method in class repicea.gui.genericwindows.CancellableWarningMessage
 
main(String[]) - Static method in class repicea.gui.genericwindows.REpiceaSplashWindow
 
main(String[]) - Static method in class repicea.gui.genericwindows.REpiceaTipDialog
 
main(String[]) - Static method in class repicea.lang.codetranslator.REnvironment
Main entry point for creating a REnvironment hosted by a Java local gateway server.
main(String[]) - Static method in class repicea.math.formula.MathFormula
 
main(String[]) - Static method in class repicea.net.server.gui.ServerInterfaceEngine
 
main(String[]) - Static method in class repicea.simulation.processsystem.SystemManager
 
main(String[]) - Static method in class repicea.simulation.treelogger.TreeLoggerManager
 
MainDialog - Class in repicea.console
 
MainDialog(Trigger, Logger) - Constructor for class repicea.console.MainDialog
 
MainDialog.MessageID - Enum in repicea.console
 
mainPanel - Variable in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
MainSplitter - Static variable in class repicea.lang.codetranslator.REnvironment
 
majorProgressBar - Variable in class lerfob.carbonbalancetool.CATFrame
 
MajorStroke - Static variable in class lerfob.carbonbalancetool.gui.XYSeriesWithIntegratedRenderer
 
makeASelection(Window) - Method in class repicea.io.tools.REpiceaRecordReader
If the number of strata is larger than 1, this method provides a dialog with a list that allows to select a particular stratum.
makePanel(Component, int) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
ManagementTypeProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that the stand intance can provide its management type, i.e.
ManagementTypeProvider.ManagementType - Enum in repicea.simulation.covariateproviders.plotlevel
 
manager - Variable in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
mapComponents(Container, Class<? extends Component>) - Static method in class repicea.gui.CommonGuiUtility
This method scans a container for all the instances of a particular class that extends the class parameter.
MaritimePineBasicLoggableTree - Interface in lerfob.treelogger.maritimepine
This interface ensures the tree can provide the basic features to be eligible for the MaritimePineBasicTreeLogger.
MaritimePineBasicTreeLogCategory - Class in lerfob.treelogger.maritimepine
 
MaritimePineBasicTreeLogCategory(Enum<?>, Object, double, boolean) - Constructor for class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogCategory
 
MaritimePineBasicTreeLogger - Class in lerfob.treelogger.maritimepine
The MaritimePineBasicTreeLogger class is a simple tree logger which considers not only the commercial volume, but also the harvest of stumps and fine woody debris.
MaritimePineBasicTreeLogger() - Constructor for class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLogger
General constructor
MaritimePineBasicTreeLoggerParameters - Class in lerfob.treelogger.maritimepine
The MaritimePineBasicTreeLoggerParameters class defines the parameters of the MaritimePineBasicTreeLogger.
MaritimePineBasicTreeLoggerParameters() - Constructor for class lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters
 
MaritimePineBasicTreeLoggerParameters.Grade - Enum in lerfob.treelogger.maritimepine
 
marshall(Object) - Method in class repicea.serial.xml.XmlMarshaller
 
matchMap - Variable in class repicea.gui.components.REpiceaMatchSelector
 
MathFormula - Class in repicea.math.formula
The MathFormula class translates a String expression in a tractable mathematical formula.
MathFormula(String, List<String>, List<String>) - Constructor for class repicea.math.formula.MathFormula
Constructor.
MathildeClimatePlot - Interface in lerfob.predictor.mathilde.climate
This interface ensures that the Stand instance is compatible with the MathildeDiameterIncrementPredictor.
MathildeClimatePredictor - Class in lerfob.predictor.mathilde.climate.formerversion
Deprecated.
MathildeClimatePredictor(boolean) - Constructor for class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
MathildeClimatePredictor - Class in lerfob.predictor.mathilde.climate
The MathildeClimatePredictor class is a model based on the SAFRAN grid values in the LERFoB network of permanent plots.
MathildeClimatePredictor(boolean) - Constructor for class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
MathildeClimatePredictor(boolean, boolean, boolean) - Constructor for class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
MathildeDiameterIncrementPredictor - Class in lerfob.predictor.mathilde.diameterincrement
This class contains the diameter increment module of Mathilde growth simulator.
MathildeDiameterIncrementPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
The MathildeDiameterIncrementPredictor class implements the diameter increment model fitted with the LERFoB database.
MathildeDiameterIncrementStand - Interface in lerfob.predictor.mathilde.diameterincrement
This interface ensures that the Stand instance is compatible with the MathildeDiameterIncrementPredictor.
MathildeImprovedMortalityPredictor - Class in lerfob.predictor.mathilde.mortality
 
MathildeImprovedMortalityPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.mortality.MathildeImprovedMortalityPredictor
 
MathildeLoggableTree - Interface in lerfob.treelogger.mathilde
 
MathildeMortalityPredictor - Class in lerfob.predictor.mathilde.mortality
This class implements the mortality submodel in Mathilde model.
MathildeMortalityPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
Constructor.
MathildeMortalityPredictor.InternalMathematicalFunction - Class in lerfob.predictor.mathilde.mortality
 
MathildeMortalityStand - Interface in lerfob.predictor.mathilde.mortality
This interface ensures that the Stand instance is compatible with the MathildeMortalityPredictor.
MathildeRecruitDbhPredictor - Class in lerfob.predictor.mathilde.recruitment
This class predicts the dbh of the recruits in MATHILDE.
MathildeRecruitDbhPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
Constructor
MathildeRecruitDbhPredictor(boolean, boolean) - Constructor for class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
 
MathildeRecruitmentNumberPredictor - Class in lerfob.predictor.mathilde.recruitment
This class predicts the number of recruits for each species of the MATHILDE model.
MathildeRecruitmentNumberPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
Constructor
MathildeRecruitmentNumberPredictor(boolean, boolean) - Constructor for class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
 
MathildeRecruitmentStand - Interface in lerfob.predictor.mathilde.recruitment
This interface ensures that the Stand instance is compatible with the MathildeRecruitmentNumberPredictor.
MathildeStandThinningPredictor - Class in lerfob.predictor.mathilde.thinning
This class implements the stand level thinning submodel in Mathilde model.
MathildeStandThinningPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.thinning.MathildeStandThinningPredictor
Constructor.
MathildeStandThinningPredictor - Class in lerfob.predictor.mathilde.thinningbeta
Deprecated.
MathildeStandThinningPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.thinningbeta.MathildeStandThinningPredictor
Deprecated.
Constructor.
MathildeSubModule - Class in lerfob.predictor.mathilde
 
MathildeSubModule(boolean, boolean, boolean) - Constructor for class lerfob.predictor.mathilde.MathildeSubModule
 
MathildeThinningStand - Interface in lerfob.predictor.mathilde.thinning
This interface ensures that the Stand instance is compatible with the MathildeStandThinningPredictor.
MathildeThinningStand - Interface in lerfob.predictor.mathilde.thinningbeta
Deprecated.
MathildeTree - Interface in lerfob.predictor.mathilde
This interface ensures that the Tree instance is compatible with all Mathilde predictors.
MathildeTreeLogger - Class in lerfob.treelogger.mathilde
 
MathildeTreeLogger() - Constructor for class lerfob.treelogger.mathilde.MathildeTreeLogger
 
MathildeTreeLoggerParameters - Class in lerfob.treelogger.mathilde
 
MathildeTreeLoggerParameters() - Constructor for class lerfob.treelogger.mathilde.MathildeTreeLoggerParameters
 
MathildeTreeLoggerParameters.Grade - Enum in lerfob.treelogger.mathilde
 
MathildeTreeSpeciesProvider - Interface in lerfob.predictor.mathilde
 
MathildeTreeSpeciesProvider.MathildeTreeSpecies - Enum in lerfob.predictor.mathilde
This enum variable defines the different species in the Mathilde simulator.
MathildeTreeThinningPredictor - Class in lerfob.predictor.mathilde.thinning
This class implements the tree level thinning submodel in Mathilde model.
MathildeTreeThinningPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
Constructor.
MathildeTreeThinningPredictor - Class in lerfob.predictor.mathilde.thinningbeta
Deprecated.
MathildeTreeThinningPredictor(boolean) - Constructor for class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
Constructor.
MathUtility - Class in repicea.math
This class implements simple static methods in mathematics.
MathUtility() - Constructor for class repicea.math.MathUtility
 
matricesZ - Variable in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
The string represents the hierarchical level.
Matrix - Class in repicea.math
This class implement most of the basic function in linear algebra Authors: Jean-Francois Lavoie and Mathieu Fortin (June 2009)
Matrix(double[][]) - Constructor for class repicea.math.Matrix
Constructor 1.
Matrix(double[]) - Constructor for class repicea.math.Matrix
Constructor 2.
Matrix(List<? extends Number>) - Constructor for class repicea.math.Matrix
Constructor 3.
Matrix(int, int) - Constructor for class repicea.math.Matrix
Constructor 4.
Matrix(int, int, double, double) - Constructor for class repicea.math.Matrix
Constructor 5.
matrixDiagBlock(Matrix) - Method in class repicea.math.Matrix
This method creates a new matrix in which the current matrix represents the first diagonal block and matrix m represents the second diagonal block.
matrixDiagonal() - Method in class repicea.math.Matrix
This method compute a diagonal matrix from a row or a column vector.
matrixStack(Matrix, boolean) - Method in class repicea.math.Matrix
This method creates a new matrix that is the stack of this and matrix m.
MatrixUtility - Class in repicea.math
This class provides some matrix operations.
MatrixUtility() - Constructor for class repicea.math.MatrixUtility
 
matrixX - Variable in class repicea.stats.data.GenericStatisticalDataStructure
 
matrixX - Variable in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
matrixX - Variable in class repicea.stats.model.glm.GeneralizedLinearModel
 
maxAllowedMemoryJVM - Variable in class repicea.console.TriggerSettings
 
MAXIMUM_PROPORTION_USED - Static variable in class repicea.lang.MemoryWatchDog
The maximum proportion of the memory that can be used before throwing an ExpectedMemoryCapacityException.
MaximumLikelihoodEstimator - Class in repicea.stats.estimators
This interface specifies if the optimizer is based on a maximum likelihood theory.
MaximumLikelihoodEstimator() - Constructor for class repicea.stats.estimators.MaximumLikelihoodEstimator
 
maxNumberOfIterations - Variable in class repicea.math.optimizer.NewtonRaphsonOptimizer
 
maxSizeOfWaitingList - Variable in class repicea.net.server.ServerConfiguration
 
MDB - Static variable in class repicea.io.GFileFilter
 
MeanAnnualPrecipitationMmProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its mean annual precipitation.
MeanAnnualTemperatureCProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its mean annual temperature.
MeanQuadraticDiameterCmProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its mean quadratic diameter for living trees.
MeanSeasonalTemperatureProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the plot or the stand instance can provide its seasonal temperature over the interval.
Memorizable - Interface in repicea.serial
This interface defines what is memorizable.
memorize(MemorizerPackage) - Method in class repicea.serial.cloner.BasicSerialCloner
This method memorizes a Serializable object.
memorize(Memorizable) - Method in class repicea.serial.cloner.BasicSerialCloner
This method memorize a part of the Memorizable instance that is specified in the method getMemoryPackage().
memorizeFromWindow(OwnedWindow) - Method in class repicea.serial.REpiceaMemorizerHandler
 
MemorizerPackage - Class in repicea.serial
The MemorizerPackage class contains a list of Serializable object that can be memorized using the SerialCloner for a customized deserialization.
MemorizerPackage() - Constructor for class repicea.serial.MemorizerPackage
 
memorySizeMenu - Variable in class repicea.console.MainDialog
 
MemoryWatchDog - Class in repicea.lang
This class is used to control the memory before a OutOfMemoryError object is thrown.
MemoryWatchDog() - Constructor for class repicea.lang.MemoryWatchDog
 
MemoryWatchDog.ExpectedMemoryCapacityException - Exception in repicea.lang
This exception class is thrown when the memory is about to exceed its capacity.
mergeMaps(Map, Map) - Static method in class repicea.util.ObjectUtility
This method merge the two maps into a third map.
mergeWithFatherCompartments() - Method in class lerfob.carbonbalancetool.CATCompartment
This method merges the carbon values of the father compartments into this compartment.
minAllowedMemoryJVM - Variable in class repicea.console.TriggerSettings
 
MINIMUM_FREE_SPACE - Static variable in class repicea.lang.MemoryWatchDog
The minimum memory space that should be free to allow the system to work properly.
minimumDbhCm - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
minimumLayoutSize(Container) - Method in class repicea.simulation.processsystem.SystemLayout
 
MinorStroke - Static variable in class lerfob.carbonbalancetool.gui.XYSeriesWithIntegratedRenderer
 
mnEdit - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mnFile - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mnHelp - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mnLogGrade - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mnSpecies - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mntmHelp - Variable in class repicea.console.MainDialog
 
mntmQuit - Variable in class repicea.console.MainDialog
 
mntmStart - Variable in class repicea.console.MainDialog
 
mntmStop - Variable in class repicea.console.MainDialog
 
mnTools - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
mode - Variable in class repicea.simulation.processsystem.ToolButton
 
modelBasedSimulatorDidThis(REpiceaPredictorEvent) - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
modelBasedSimulatorDidThis(REpiceaPredictorEvent) - Method in interface repicea.simulation.REpiceaPredictorListener
 
ModelBasedSimulatorEventProperty(String) - Constructor for class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
ModelParameterEstimates - Class in repicea.simulation
The ModelParameterEstimates is a wrapper for parameter estimates.
ModelParameterEstimates(Matrix, Matrix) - Constructor for class repicea.simulation.ModelParameterEstimates
Constructor.
MonteCarloEstimate - Class in repicea.stats.estimates
This estimate contains the realizations of a Monte Carlo simulations.
MonteCarloEstimate() - Constructor for class repicea.stats.estimates.MonteCarloEstimate
Constructor.
MonteCarloEstimate.MessageID - Enum in repicea.stats.estimates
 
MonteCarloEstimateMap() - Constructor for class lerfob.carbonbalancetool.CATUtilityMaps.MonteCarloEstimateMap
 
MonteCarloSettings - Class in repicea.simulation
 
MonteCarloSettings() - Constructor for class repicea.simulation.MonteCarloSettings
 
MonteCarloSettings.MonteCarloVarSource - Enum in repicea.simulation
 
MonteCarloSimulationCompliantObject - Interface in repicea.simulation
 
mouseClicked(MouseEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
mouseClicked(MouseEvent) - Method in class repicea.gui.popup.REpiceaPopupListener
 
mouseClicked(MouseEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
mouseClicked(MouseEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
MouseDragCursor - Static variable in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
mouseDragged(MouseEvent) - Method in class repicea.gui.components.REpiceaScrollPane.InternalDragGestureMoveComponentHandler
 
mouseDragged(MouseEvent) - Method in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
mouseDragged(MouseEvent) - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
mouseDragged(MouseEvent) - Method in class repicea.simulation.processsystem.ProcessorButton.DragGestureButtonMoveHandler
 
mouseEntered(MouseEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
mouseEntered(MouseEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
mouseEntered(MouseEvent) - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
mouseEntered(MouseEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
mouseExited(MouseEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
mouseExited(MouseEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
mouseExited(MouseEvent) - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
mouseExited(MouseEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
mousePressed(MouseEvent) - Method in class repicea.gui.components.REpiceaScrollPane.InternalDragGestureMoveComponentHandler
 
mousePressed(MouseEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
mousePressed(MouseEvent) - Method in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
mousePressed(MouseEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
mousePressed(MouseEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
mouseReleased(MouseEvent) - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
mouseReleased(MouseEvent) - Method in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
mouseReleased(MouseEvent) - Method in class repicea.io.tools.ImportFieldManagerDialog
 
mouseReleased(MouseEvent) - Method in class repicea.simulation.processsystem.PreProcessorLinkLine.InternalMouseMotionListener
 
mouseReleased(MouseEvent) - Method in class repicea.simulation.processsystem.ProcessorButton.DragGestureButtonMoveHandler
 
mouseReleased(MouseEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
MoveProcessorButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.ToolPanel.MoveProcessorButton
 
multipleSelection - Variable in class repicea.io.tools.ExportTool
Deprecated.
 
multipleSelection - Variable in class repicea.io.tools.REpiceaExportTool
 
multiply(Matrix) - Method in class repicea.math.Matrix
This method compute the matrix multiplication product of this x m
multiply(double) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns a MonteCarloEstimate instance that results from the product of original MonteCarloEstimate instance and a scalar.
multiply(double) - Method in class repicea.stats.estimates.MonteCarloEstimate
This method returns a MonteCarloEstimate instance that results from the product of original MonteCarloEstimate instance and a scalar.
multiply(double) - Method in class repicea.stats.estimates.PointEstimate
 
multiply(double) - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
multiply(double) - Method in class repicea.stats.estimates.PopulationTotalEstimate
 
multiplyArrayByScalar(double[], double) - Static method in class repicea.util.ObjectUtility
This static method returns a new array of double, each double being the product of the value in the original array and the scalar parameter.
multiplyByAScalar(double) - Method in class repicea.simulation.processsystem.AmountMap
This method multiplies all the values in the current instance by a scalar.
multiplyTwoArraysOfDouble(double[], double[]) - Static method in class lerfob.windstormdamagemodels.awsmodel.CommonUtility
 
MyFileFilter - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
MyFileFilter - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 

N

name - Variable in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
name() - Method in class repicea.gui.REpiceaAWTProperty
 
nameTextField - Variable in class repicea.simulation.treelogger.LogCategoryPanel
 
NaturalDisturbanceInformationProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the instance can provide either the time since the last disturbance or at least the time since the first known date.
NB_ROWS_BEYOND_WHICH_MATRIX_INVERSION_TAKES_TOO_MUCH_TIME - Static variable in class repicea.math.Matrix
 
nbMonteCarloRealizations - Variable in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
nCols - Variable in class repicea.stats.estimates.PointEstimate
 
NegativeBinomialUtility - Class in repicea.stats.distributions.utility
 
NegativeBinomialUtility() - Constructor for class repicea.stats.distributions.utility.NegativeBinomialUtility
 
NewtonRaphsonOptimizer - Class in repicea.math.optimizer
The NewtonRaphsonOptimizer class implements the Optimizer interface.
NewtonRaphsonOptimizer() - Constructor for class repicea.math.optimizer.NewtonRaphsonOptimizer
 
nextBartlettDecompositionMatrix(int, int) - Method in class repicea.stats.REpiceaRandom
This method returns the matrix A in the Bartlett decomposition.
nextBeta(double, double) - Method in class repicea.stats.REpiceaRandom
Returns a random deviate from a beta distribution.
nextChiSquare(int) - Method in class repicea.stats.REpiceaRandom
This method returns a Chi squared random value.
nextGamma(double, double) - Method in class repicea.stats.REpiceaRandom
Returns a random gamma distributed value following Marsaglia and Tsang's method.
nextNegativeBinomial(double, double) - Method in class repicea.stats.REpiceaRandom
This method returns a random integer that follows negative binomial distribution.
nextRecord() - Method in class repicea.io.FormatReader
This method returns the next record in the file.
nextRecord(int) - Method in class repicea.io.FormatReader
This method skips some lines and then reads a record in the file;
nextRecord(int) - Method in class repicea.io.javacsv.CSVReader
 
nextRecord(int) - Method in class repicea.io.javadbf.DBFReader
Reads the returns the next row in the DBF stream.
nextRecord(int) - Method in class repicea.io.javasql.SQLReader
 
nextStudentT(double) - Method in class repicea.stats.REpiceaRandom
Returns a random deviate from the standard Student's t distribution.
NON_AVAILABLE_FIELD - Static variable in class repicea.io.FormatField
 
normalizedValue - Variable in class repicea.stats.distributions.GaussianErrorTerm
 
nro - Variable in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
nRows - Variable in class repicea.stats.estimates.PointEstimate
 
NullInThisFieldException(ImportFieldElement) - Constructor for exception repicea.io.tools.REpiceaRecordReader.NullInThisFieldException
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
numberChanged(NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent) - Method in interface repicea.gui.components.NumberFormatFieldFactory.NumberFieldListener
This method deals with the event fired by the JFormattedNumericField instance.
NumberFormatFieldFactory - Class in repicea.gui.components
The NumberFormatFieldFactory class provides JTextField instances specially designed to receive numbers.
NumberFormatFieldFactory() - Constructor for class repicea.gui.components.NumberFormatFieldFactory
 
NumberFormatFieldFactory.JFormattedNumericField - Class in repicea.gui.components
The JFormattedNumericField class is a special JFormattedTextField case where input values are either Double or Integer.
NumberFormatFieldFactory.NumberFieldDocument - Class in repicea.gui.components
This class overrides method in the PlainDocument class in order to format the JTextField to numbers.
NumberFormatFieldFactory.NumberFieldDocument.NumberFieldEvent - Class in repicea.gui.components
 
NumberFormatFieldFactory.NumberFieldListener - Interface in repicea.gui.components
This interface ensures the listener can deal with NumberFieldEvent instances as soon as they are fired by the JFormattedNumericField instance.
NumberFormatFieldFactory.Range - Enum in repicea.gui.components
 
NumberFormatFieldFactory.Type - Enum in repicea.gui.components
 
numberOfClientThreads - Variable in class repicea.net.server.ServerConfiguration
 
numberOfParameters - Variable in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
NumberOfParameters - Static variable in class lerfob.predictor.mathilde.thinning.MathildeStandThinningPredictor
 
NumberOfRealizationsProvider - Interface in repicea.stats.estimates
This interface ensures that the number of realizations can be provided by the estimate.
NumberOfTreesHaForDominantFeatures - Static variable in class repicea.simulation.allometrycalculator.AllometryCalculator
 
NumericalIntegrationMethod - Class in repicea.stats.integral
The NumericalIntegrationMethod class is the basic class for all numerical integration, such as Gauss quadrature, trapezoidal rule, Simpson's composite rule, etc...
NumericalIntegrationMethod() - Constructor for class repicea.stats.integral.NumericalIntegrationMethod
 

O

ObjectUtility - Class in repicea.util
 
ObjectUtility() - Constructor for class repicea.util.ObjectUtility
 
Observation - Class in repicea.stats.data
 
Observation(Object[]) - Constructor for class repicea.stats.data.Observation
 
observations - Variable in class repicea.stats.data.DataSet
 
observedHeights - Variable in class repicea.simulation.hdrelationships.HDRelationshipPredictor
 
observedValues - Variable in class repicea.stats.model.IndividualLikelihood
 
offsetPoint - Variable in class repicea.gui.dnd.DragGestureMoveComponentHandler
 
ok - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
okAction() - Method in class lerfob.carbonbalancetool.CATFrame
 
okAction() - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
okAction() - Method in class lerfob.carbonbalancetool.io.CATSpeciesSelectionDialog
 
okAction() - Method in class repicea.gui.genericwindows.CancellableWarningMessage
 
okAction() - Method in class repicea.gui.genericwindows.GenericChooseFileDialog
 
okAction() - Method in class repicea.gui.genericwindows.REpiceaLicenseWindow
 
okAction() - Method in class repicea.gui.genericwindows.REpiceaSimpleListDialog
 
okAction() - Method in class repicea.gui.REpiceaDialog
 
okAction() - Method in class repicea.gui.REpiceaFrame
 
okAction() - Method in interface repicea.gui.REpiceaWindow
 
okAction() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
The okAction method checks if the filename is valid, then creates the record set and finally save the file.
okAction() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
okAction() - Method in class repicea.io.tools.REpiceaExportToolDialog
The okAction method checks if the filename is valid, then creates the record set and finally save the file.
okAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
OLSEstimator - Class in repicea.stats.estimators
The OLSOptimizer implements the Ordinary Least Squares estimator.
OLSEstimator() - Constructor for class repicea.stats.estimators.OLSEstimator
 
openStream() - Method in class repicea.io.FormatReader
This method opens the stream depending on its nature (a resource or a file)
openStream() - Method in class repicea.io.javacsv.CSVWriter
 
openUrl(String) - Static method in class repicea.net.BrowserCaller
Method to Open the Broser with Given URL
optimalValue - Variable in class repicea.math.optimizer.AbstractOptimizer
 
optimizationEnded - Static variable in interface repicea.math.optimizer.OptimizerListener
 
OptimizationException(String) - Constructor for exception repicea.math.optimizer.AbstractOptimizer.OptimizationException
 
optimizationStarted - Static variable in interface repicea.math.optimizer.OptimizerListener
 
optimize(AbstractMathematicalFunction, List<Integer>) - Method in class repicea.math.optimizer.AbstractOptimizer
This method optimizes the likelihood of the StatisticalModel instance.
optimize(AbstractMathematicalFunction, List<Integer>) - Method in class repicea.math.optimizer.NewtonRaphsonOptimizer
 
optimizerDidThis(String) - Method in interface repicea.math.optimizer.OptimizerListener
 
optimizerDidThis(String) - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
OptimizerListener - Interface in repicea.math.optimizer
This interface should be implemented by AbstractMathematicalFunction-derived classes in which the different steps of the optimization has to be taken into account.
optionList - Variable in class repicea.io.tools.ExportToolDialog
Deprecated.
 
optionList - Variable in class repicea.io.tools.REpiceaExportToolDialog
 
optionTitleLabel - Variable in class repicea.io.tools.ExportToolDialog
Deprecated.
 
optionTitleLabel - Variable in class repicea.io.tools.REpiceaExportToolDialog
 
originalIcon - Variable in class repicea.simulation.processsystem.SelectableJButton
 
outerPort - Variable in class repicea.net.server.ServerConfiguration
 
OwnedWindow - Interface in repicea.gui
The OwnedWindow interface ensures that a particular represents an instance.
owner - Variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
owner - Variable in class repicea.simulation.processsystem.ToolPanel
 
owner - Variable in class repicea.simulation.treelogger.TreeLogger
 
oXVector - Variable in class repicea.simulation.REpiceaPredictor
 

P

paint(Graphics) - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.LeftHandSideProcessorButton
 
paint(Graphics) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton
 
paint(Graphics) - Method in class repicea.simulation.processsystem.SelectableJButton
 
paint(Graphics) - Method in class repicea.simulation.processsystem.SystemPanel.SystemInternalPanel
 
panel - Variable in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
panLogCategory - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
ParameterBound - Class in repicea.math
This class defines the bound for a particular parameter.
ParameterBound(Double, Double) - Constructor for class repicea.math.ParameterBound
 
parameterBounds - Variable in class repicea.math.AbstractMathematicalFunction
 
parameterEstimate - Variable in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
Parameterizable - Interface in repicea.simulation
Deprecated.
ParameterLoader - Class in repicea.simulation
This class offers static methods to load parameters.
ParameterLoader() - Constructor for class repicea.simulation.ParameterLoader
 
ParameterMap - Class in repicea.simulation
 
ParameterMap() - Constructor for class repicea.simulation.ParameterMap
Constructor.
PARAMETERS_DEVIATE_JUST_GENERATED - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
params - Variable in class repicea.simulation.treelogger.TreeLogger
 
params - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
ParentDrivenFileSystemView - Class in repicea.gui
The ParentDrivenFileSystemView class is associated with the JFileChooser class.
ParentDrivenFileSystemView(File, boolean) - Constructor for class repicea.gui.ParentDrivenFileSystemView
Constructor.
parentFrame - Variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
patchXmlSerializerBug() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
 
PathSeparator - Static variable in class repicea.util.ObjectUtility
 
pent2 - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
performSpecialAdd(Matrix, Matrix) - Static method in class repicea.stats.StatisticalUtility
This method performs a special addition in which only the elements different from 0 and 1 are involved.
permissions - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
plot - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
PLOT - Static variable in class repicea.simulation.HierarchicalLevel
 
PlotWeightProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that the plot can provide its sampling weight
PointEstimate<O extends PopulationUnit> - Class in repicea.stats.estimates
 
PointEstimate() - Constructor for class repicea.stats.estimates.PointEstimate
Basic constructor without population size.
PointEstimate(double) - Constructor for class repicea.stats.estimates.PointEstimate
Constructor with population size.
PopulationMeanEstimate - Class in repicea.stats.estimates
This class implements an estimator of the mean of the population, which is the sample mean and the sample variance corrected by n/(n-1) being the estimator of the variance.
PopulationMeanEstimate() - Constructor for class repicea.stats.estimates.PopulationMeanEstimate
Basic constructor without population size.
PopulationMeanEstimate(double) - Constructor for class repicea.stats.estimates.PopulationMeanEstimate
Constructor with population size.
PopulationTotalEstimate - Class in repicea.stats.estimates
This class implements the classical Horvitz-Thompson estimator of the total (tau) in a context of random sampling WITHOUT replacement.
PopulationTotalEstimate() - Constructor for class repicea.stats.estimates.PopulationTotalEstimate
Constructor.
PopulationTotalEstimate(double) - Constructor for class repicea.stats.estimates.PopulationTotalEstimate
Constructor with population size.
PopulationUnit - Class in repicea.stats.sampling
This class represents a single sample unit that would have been observed in a finite population.
PopulationUnit(Matrix) - Constructor for class repicea.stats.sampling.PopulationUnit
Constructor
PopulationUnitWithEqualInclusionProbability - Class in repicea.stats.sampling
This class is the most basic population unit that can be sampled.
PopulationUnitWithEqualInclusionProbability(Matrix) - Constructor for class repicea.stats.sampling.PopulationUnitWithEqualInclusionProbability
 
PopulationUnitWithUnequalInclusionProbability - Class in repicea.stats.sampling
This class implements the sampling with uneven inclusion probabilities across the units.
PopulationUnitWithUnequalInclusionProbability(Matrix, double) - Constructor for class repicea.stats.sampling.PopulationUnitWithUnequalInclusionProbability
Constructor.
popupMenu - Variable in class repicea.gui.components.REpiceaTabbedPane
 
popupWriteOverWarningDialog(Component) - Static method in class repicea.gui.CommonGuiUtility
This static method asks the user if he/she wants to write over an existing file.
posteriorToRunning() - Method in class repicea.simulation.treelogger.TreeLogger
This method is run just after launching the logger task.
postLoadingAction() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
postLoadingAction() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
postLoadingAction() - Method in interface repicea.io.IOUserInterface
This method performs a particular action immediately after the parameters have been loaded.
postLoadingAction() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
postLoadingAction() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
postLoadingAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
postSavingAction() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
postSavingAction() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
postSavingAction() - Method in interface repicea.io.IOUserInterface
This method performs a particular action immediately after the parameters have been saved.
postSavingAction() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
postSavingAction() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
postSavingAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
postUnmarshallingAction() - Method in interface repicea.serial.xml.PostXmlUnmarshalling
This method is called after the unmashalling.
postUnmarshallingAction() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
PostXmlUnmarshalling - Interface in repicea.serial.xml
The PostXmlUnmarshalling class offers the possibility to do some actions immediately after the unmarshalling.
potentialMatches - Variable in class repicea.gui.components.REpiceaMatchSelector
 
PotentialVegetationProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its potential vegetation code.
powMatrix(double) - Method in class repicea.math.Matrix
This method computes the power of the seed by the elements of the matrix.
pred - Variable in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014TreeImpl
 
predictEvent(MathildeMortalityStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
This method returns either a boolean if isResidualVariabilityEnabled was set to true or the probability otherwise.
predictEvent(S, T, Object...) - Method in class repicea.simulation.REpiceaBinaryEventPredictor
This method returns either a boolean if isResidualVariabilityEnabled was set to true or the probability otherwise.
predictEventProbability(MathildeMortalityStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.mortality.MathildeImprovedMortalityPredictor
 
predictEventProbability(MathildeMortalityStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
predictEventProbability(MathildeThinningStand, Object, Object...) - Method in class lerfob.predictor.mathilde.thinning.MathildeStandThinningPredictor
 
predictEventProbability(MathildeThinningStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor
 
predictEventProbability(MathildeThinningStand, Object, Object...) - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeStandThinningPredictor
Deprecated.
 
predictEventProbability(MathildeThinningStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.thinningbeta.MathildeTreeThinningPredictor
Deprecated.
 
predictEventProbability(FrenchNFIThinnerPlot, Object, Object...) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method returns the probability of harvest occurrence at the plot level.
predictEventProbability(S, T, Object...) - Method in class repicea.simulation.REpiceaBinaryEventPredictor
This method returns the probability of event for a particular tree represented by the parameter "tree".
predictFixedEffectOnly(Matrix, MathildeRecruitmentStand, MathildeTree) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
 
predictGrowth(DopalepPlot, DopalepTree, Object...) - Method in class lerfob.predictor.dopalep.DopalepDbhIncrementPredictor
 
predictGrowth(MathildeDiameterIncrementStand, MathildeTree, Object...) - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
predictGrowth(S, T, Object...) - Method in interface repicea.simulation.GrowthModel
This method returns the growth of a particular tree represented by the parameter "tree".
predictHeightM(FrenchHDRelationship2014Stand, FrenchHDRelationship2014Tree) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
 
predictHeightM(FrenchHDRelationship2018Plot, FrenchHDRelationship2018Tree) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
 
predictHeightM(Stand, Tree) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
 
predictHeightM(Stand, Tree) - Method in interface repicea.simulation.hdrelationships.HeightPredictor
Predicts the height for individual trees and also implements the Monte Carlo simulation automatically.
predictHeightRandomEffects(FrenchHDRelationship2014Stand) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
predictHeightRandomEffects(FrenchHDRelationship2018Plot) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
predictHeightRandomEffects(Stand) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method computes the best linear unbiased predictors of the random effects
predictNumberOfRecruits(MathildeRecruitmentStand) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
This method returns the number of recruits for each species.
predictRecruitDiameter(MathildeRecruitmentStand, MathildeTree) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
This method returns the dbh of the recruit in Mathilde model.
predictRecruitDiameterWithOffset(MathildeRecruitmentStand, MathildeTree) - Method in class lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor
 
predictTreeCommercialOverbarkVolumeDm3(FrenchCommercialVolume2014Tree) - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Predictor
This method return the over-bark volume estimate for an individual tree.
predictTreeCommercialOverbarkVolumeDm3(FrenchCommercialVolume2014TreeImpl, int) - Method in class lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Predictor
This method return the over-bark volume estimate for an individual tree.
predictTreeCommercialOverbarkVolumeDm3(FrenchCommercialVolume2020Tree) - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
This method return the over-bark volume estimate for an individual tree.
predictTreeCommercialOverbarkVolumeDm3(FrenchCommercialVolume2020TreeImpl, int) - Method in class lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Predictor
This method return the over-bark volume estimate for an individual tree.
PreEndOfLifeLinkLine - Class in lerfob.carbonbalancetool.productionlines
 
PreEndOfLifeLinkLine(SystemPanel, AnchorProvider) - Constructor for class lerfob.carbonbalancetool.productionlines.PreEndOfLifeLinkLine
 
PreEndOfLifeLinkLineStroke - Static variable in class lerfob.carbonbalancetool.productionlines.PreEndOfLifeLinkLine
 
preferredLayoutSize(Container) - Method in class repicea.simulation.processsystem.SystemLayout
 
PreProcessorLinkLine - Class in repicea.simulation.processsystem
 
PreProcessorLinkLine(SystemPanel, AnchorProvider) - Constructor for class repicea.simulation.processsystem.PreProcessorLinkLine
 
PreProcessorLinkLine.InternalMouseMotionListener - Class in repicea.simulation.processsystem
 
previousDimension - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
priceProvider - Variable in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
 
PrimitiveToJavaWrapperMap - Static variable in class repicea.lang.reflect.ReflectUtility
 
PrimitiveTypeMap - Static variable in class repicea.lang.reflect.ReflectUtility
 
PrimitiveWrappers - Static variable in class repicea.lang.reflect.ReflectUtility
 
priorToRunning() - Method in class repicea.simulation.treelogger.TreeLogger
This method is run just before launching the logger task.
processCode(String) - Method in class repicea.lang.codetranslator.REnvironment
 
processCode(String) - Method in interface repicea.lang.codetranslator.REpiceaCodeTranslator
This method processes a request from another language.
PROCESSED_PIECE - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
Processor - Class in repicea.simulation.processsystem
 
Processor() - Constructor for class repicea.simulation.processsystem.Processor
General constructor.
Processor(String) - Constructor for class repicea.simulation.processsystem.Processor
General constructor with name.
ProcessorButton - Class in repicea.simulation.processsystem
 
ProcessorButton(SystemPanel, Processor, REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.ProcessorButton
 
ProcessorButton(SystemPanel, Processor) - Constructor for class repicea.simulation.processsystem.ProcessorButton
 
ProcessorButton.DragGestureButtonMoveHandler - Class in repicea.simulation.processsystem
 
processorButtons - Variable in class repicea.simulation.processsystem.SystemPanel
 
ProcessorInternalDialog - Class in repicea.simulation.processsystem
 
ProcessorInternalDialog(Window, ProcessorButton) - Constructor for class repicea.simulation.processsystem.ProcessorInternalDialog
The constructor is called by its underlying class WoodProductProcessor.
ProcessorInternalDialog.MessageID - Enum in repicea.simulation.processsystem
 
ProcessorLinkLine - Class in repicea.simulation.processsystem
 
ProcessorLinkLine(SystemPanel, Processor, Processor) - Constructor for class repicea.simulation.processsystem.ProcessorLinkLine
 
ProcessorLinkLineSlider - Class in repicea.simulation.processsystem
 
ProcessorLinkLineSlider(Window, ProcessorLinkLine) - Constructor for class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
processorTextField - Variable in class repicea.simulation.processsystem.ProcessorInternalDialog
 
processRequest(Object) - Method in class repicea.net.server.BasicClient
 
processRequest() - Method in class repicea.net.server.ClientThread
 
processStandList(String, Map) - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
ProcessUnit<E extends java.lang.Enum<?>> - Class in repicea.simulation.processsystem
The ProcessUnit class represents a basic unit in a process system.
ProcessUnit() - Constructor for class repicea.simulation.processsystem.ProcessUnit
 
ProcessUnit(Map<E, Double>) - Constructor for class repicea.simulation.processsystem.ProcessUnit
 
processWoodPiece(String, int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
The main method for this class.
processWoodPiece(int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
processWoodPiece(LogCategory, int, String, AmountMap<CarbonUnit.Element>, String) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
The main method for this class.
processWoodPieceIntoThisProductionLine(String, int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method sends a log into a specific production line.
processWoodyDebris(int, String, AmountMap<CarbonUnit.Element>, String, WoodyDebrisProcessor.WoodyDebrisProcessorID) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
This method calculates the carbon units in the woody debris.
ProductionLine - Class in lerfob.carbonbalancetool.productionlines
Deprecated.
ProductionLine(ProductionLineManager) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
General constructor
ProductionLineEvent - Class in lerfob.carbonbalancetool.productionlines
Deprecated.
ProductionLineEvent(ProductionLineManager) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineEvent
Deprecated.
ProductionLineManager - Class in lerfob.carbonbalancetool.productionlines
Deprecated.
ProductionLineManager() - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
General constructor.
productionLineManagerChanged(ProductionLineEvent) - Method in interface lerfob.carbonbalancetool.productionlines.ProductionLineManagerChangeListener
Deprecated.
This method handles the change in the ProductionLineManager instance this class is listening to.
productionLineManagerChanged(ProductionLineEvent) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
 
ProductionLineManagerChangeListener - Interface in lerfob.carbonbalancetool.productionlines
Deprecated.
ProductionLineProcessor - Class in lerfob.carbonbalancetool.productionlines
The WoodProductProcessor class handles all the processing from the wood piece to a particular end product.
ProductionLineProcessor() - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
For XmlDeserialization only.
ProductionLineProcessor(ProductionLine) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
ProductionLineProcessor(ProductionLine, double, double) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
ProductionLineProcessor(ProductionLine, ProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
ProductionLineProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
ProductionLineProcessorButton(SystemPanel, AbstractProductionLineProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton
Constructor.
ProductionLineProcessorButton.DragGestureCreateEndOfLifeLinkListener - Class in lerfob.carbonbalancetool.productionlines
 
productionManagerMap - Variable in class lerfob.carbonbalancetool.CATSettings
 
ProductionProcessorManager - Class in lerfob.carbonbalancetool.productionlines
The ProductionProcessorManager class is an implementation of SystemManager for production line design in a context of carbon balance assessment.
ProductionProcessorManager(DefaultREpiceaGUIPermission) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
Constructor.
ProductionProcessorManager() - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
ProductionProcessorManager.EnhancedMode - Enum in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorManager.TreeLoggerInstanceCompatibilityException - Exception in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorManagerDialog - Class in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorManagerDialog(Window, ProductionProcessorManager) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
Constructor.
ProductionProcessorManagerDialog.MessageID - Enum in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorManagerWrapper(CATUtility.ProductionManagerName, ProductionProcessorManager) - Constructor for class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
ProductionProcessorToolPanel - Class in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorToolPanel(SystemPanel) - Constructor for class lerfob.carbonbalancetool.productionlines.ProductionProcessorToolPanel
 
ProductionProcessorToolPanel.CreateEndOfLifeLinkButton - Class in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorToolPanel.CreateLandfillProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorToolPanel.CreateLeftInForestProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
ProductionProcessorToolPanel.CreateProductionLineProcessorButton - Class in lerfob.carbonbalancetool.productionlines
 
PROGRESS - Static variable in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
progressBarEnabled - Variable in class repicea.simulation.treelogger.TreeLogger
 
propertyChange(PropertyChangeEvent) - Method in class lerfob.carbonbalancetool.CATFrame
Listens to the progress of the TreeLogger, the WoodPieceProcessorWorker and the CarbonCompartmentManager.
propertyChange(PropertyChangeEvent) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
propertyChange(PropertyChangeEvent) - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
propertyChange(PropertyChangeEvent) - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel
 
propertyChange(PropertyChangeEvent) - Method in class repicea.console.MainDialog
 
propertyChange(PropertyChangeEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
propertyChange(PropertyChangeEvent) - Method in class repicea.gui.WindowSettings
 
propertyChange(PropertyChangeEvent) - Method in class repicea.io.REpiceaIOFileHandlerUI
 
propertyChange(PropertyChangeEvent) - Method in class repicea.multiprocess.JavaProcessWrapper
 
propertyChange(PropertyChangeEvent) - Method in class repicea.net.RemotePropertyChangeListener
 
propertyChange(PropertyChangeEvent) - Method in class repicea.net.server.AbstractServer
 
propertyChange(PropertyChangeEvent) - Method in class repicea.net.server.gui.ClientThreadPanel
 
propertyChange(PropertyChangeEvent) - Method in class repicea.net.server.gui.ServerDialog
 
PropertyChangeEventExecutor - Class in repicea.util
This class handles a combination of listener:event.
PropertyChangeEventExecutor(PropertyChangeListener, PropertyChangeEvent) - Constructor for class repicea.util.PropertyChangeEventExecutor
 
PropertyChangeEventGeneratingClass - Class in repicea.util
This class implements all the basic features to generate PropertyChangeEvent on the Event Dispatch Thread.
PropertyChangeEventGeneratingClass() - Constructor for class repicea.util.PropertyChangeEventGeneratingClass
 
PropertyChangeEventGeneratingClass.EventHandler - Class in repicea.util
 
propertyName - Variable in class repicea.io.tools.ImportFieldElement
 
protocol - Variable in class repicea.net.server.ServerConfiguration
 
provideSpeciesInNaturalOrder() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
put(String, DataBlock) - Method in class repicea.stats.data.DataBlock
 
put(K, V) - Method in class repicea.util.Index
 
putAll(Map<? extends E, ? extends Double>) - Method in class repicea.simulation.processsystem.AmountMap
 
PythonAccessPoint - Class in lerfob.carbonbalancetool.pythonaccess
This class is the entry point for a coupling with a Python application.
PythonAccessPoint() - Constructor for class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 

Q

QuadratureNode - Class in repicea.stats.integral
This class represents the implementation of a Gaussian Quadrature Node.
QuadratureNode(double, double) - Constructor for class repicea.stats.integral.QuadratureNode
Protected Constructor.
queue - Variable in class repicea.app.AbstractGenericEngine
 

R

raf - Variable in class repicea.app.SettingMemory
 
RANDOM_EFFECT_DEVIATE_JUST_GENERATED - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
RANDOM_GENERATOR - Static variable in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
randomEffectsSpecifications - Variable in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
RandomVariable<D extends Distribution> - Class in repicea.stats
The RandomVariable class ensures the instance can provide its two first central moments (i.e.
RandomVariable(D) - Constructor for class repicea.stats.RandomVariable
 
read(BufferedReader) - Method in class repicea.io.javacsv.CSVHeader
 
read(DataInput) - Method in class repicea.io.javadbf.DBFHeader
 
read(Statement, String) - Method in class repicea.io.javasql.SQLHeader
 
readAllRecords() - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
readAllRecords() - Method in class repicea.io.tools.REpiceaRecordReader
This method reads all the records of the dataset.
readLineRecord(Object[], int) - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
readLineRecord(Object[], int) - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
 
readLineRecord(Object[], int) - Method in class repicea.io.tools.REpiceaRecordReader
This method read the line record and set the values in the appropriate fields.
readLittleEndianInt(DataInput) - Static method in class repicea.io.javadbf.Utils
 
readLittleEndianShort(DataInput) - Static method in class repicea.io.javadbf.Utils
 
readObject() - Method in interface repicea.net.SocketWrapper
This method reads the object from the socket.
readObject(int) - Method in interface repicea.net.SocketWrapper
This method reads an object from the socket.
readObject() - Method in class repicea.net.TCPSocketWrapper
 
readObject(int) - Method in class repicea.net.TCPSocketWrapper
 
readObject() - Method in class repicea.net.UDPSocketWrapper
 
readObject(int) - Method in class repicea.net.UDPSocketWrapper
 
readObject() - Method in class repicea.serial.xml.XmlDeserializer
This method returns the object that has been deserialized.
readObjectFromServer() - Method in class repicea.net.server.BasicClient
 
readRecordsForThisGroupId(int) - Method in class lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader
 
readRecordsForThisGroupId(int) - Method in class lerfob.carbonbalancetool.io.CATYieldTableRecordReader
 
readRecordsForThisGroupId(int) - Method in class repicea.io.tools.REpiceaRecordReader
This method reads the records that correspond to the group ID.
receivedObjects - Variable in class repicea.multiprocess.IndependentProcessIncomingCommunicationWorker
 
receiveThisWindow(Window) - Method in interface repicea.gui.UIToolKit.WindowTrackerListener
 
recordProcessor(Processor) - Method in class repicea.simulation.processsystem.TestProcessUnit
 
recordRandomEffects(String) - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
recordSets - Variable in class repicea.io.tools.ExportTool
Deprecated.
 
recordSettings() - Method in class repicea.console.TriggerSettings
 
recordSubjectTestedForBlups(MonteCarloSimulationCompliantObject) - Method in class repicea.simulation.REpiceaPredictor
 
redefineProgressBar() - Method in class lerfob.carbonbalancetool.CATFrame
 
redefineSpeciesList() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
redirectOutputStream() - Method in class repicea.console.Trigger
 
redo - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
REFERENCE_AREA_HA - Static variable in class lerfob.predictor.mathilde.recruitment.MathildeRecruitmentNumberPredictor
 
referencePackage - Variable in class repicea.serial.REpiceaMemorizerHandler
 
ReflectUtility - Class in repicea.lang.reflect
 
ReflectUtility() - Constructor for class repicea.lang.reflect.ReflectUtility
 
Refreshable - Interface in repicea.gui
The Refreshable interface ensures a Container instance can refresh its content.
refreshInterface() - Method in class lerfob.carbonbalancetool.CATFrame
 
refreshInterface() - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
refreshInterface() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
refreshInterface() - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
refreshInterface() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
refreshInterface() - Method in class repicea.gui.components.REpiceaSlider
 
refreshInterface() - Method in class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
refreshInterface() - Method in class repicea.gui.dnd.DnDPanel.InternalPanel
 
refreshInterface() - Method in class repicea.gui.dnd.DnDPanel
 
refreshInterface() - Method in interface repicea.gui.Refreshable
This method refreshes the content of the Container instance that implements this interface.
refreshInterface() - Method in class repicea.gui.REpiceaDialog
 
refreshInterface() - Method in class repicea.io.tools.ImportFieldManagerDialog
 
refreshInterface() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
refreshInterface() - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
refreshInterface() - Method in class repicea.simulation.processsystem.SystemPanel
 
refreshInterface() - Method in class repicea.simulation.processsystem.ToolPanel
 
refreshInterface() - Method in class repicea.simulation.treelogger.LogCategoryPanel
 
refreshTitle() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
The method sets the title of the dialog.
refreshTitle() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
The method sets the title of the dialog.
RefreshTitle(IOUserInterfaceableObject, REpiceaWindow) - Static method in class repicea.io.REpiceaIOFileHandlerUI
This method sets the title of the window instance according to the filename provided by the caller.
refreshTitle() - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
refreshTitle() - Method in class repicea.io.tools.REpiceaExportToolDialog
 
refreshTitle() - Method in class repicea.simulation.processsystem.SystemManagerDialog
The method sets the title of the dialog.
refreshUI() - Method in class repicea.simulation.treelogger.LogCategoryPanel
 
registerClassNameChange(String, String) - Static method in class repicea.serial.xml.XmlSerializerChangeMonitor
This method register a class name change.
registerConnectionUser(Object, String) - Static method in class repicea.io.javasql.DatabaseConnectionManager
This method first checks if the connection exists through its url.
registerEnumNameChange(String, String, String) - Static method in class repicea.serial.xml.XmlSerializerChangeMonitor
This method register an enum name change.
registerLinkBeingCreated(PreProcessorLinkLine) - Method in class repicea.simulation.processsystem.SystemPanel
 
registerListeners(List<EventListener>) - Method in class repicea.net.RemoteEventManager
This class register the local listeners and sends the associated remote listeners through the socket.
registerLocation(Window) - Static method in class repicea.gui.UIControlManager
This method registers the window location.
registerMemorizerPackage(XmlList) - Method in class repicea.serial.REpiceaMemorizerHandler
 
registerNewClientThreadPanel() - Method in class repicea.net.server.gui.ServerDialog
 
registerObject(P) - Method in interface repicea.gui.ListManager
This method add the UserInterfaceableObject-derived instance to the list.
registerObject(Processor) - Method in class repicea.simulation.processsystem.SystemManager
 
registerProbabilities(double[]) - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSStand
This method is optional.
registerProbability(double) - Method in interface lerfob.windstormdamagemodels.awsmodel.AWSTree
 
registerTree(TreeStatusProvider.StatusClass, CATCompatibleStand, CATCompatibleTree) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
registerTreeLoggerName(String) - Static method in class repicea.simulation.treelogger.TreeLoggerManager
This method registers the tree logger name in order to load it afterwards.
registerTreeSpecies(CATCompatibleTree) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
RegressionElements() - Constructor for class repicea.simulation.hdrelationships.HDRelationshipPredictor.RegressionElements
 
RelativePathFile - Class in repicea.io
The RelativePathFile class extends the File class.
RelativePathFile(String, String) - Constructor for class repicea.io.RelativePathFile
Constructor 1.
RelativePathFile(String, File) - Constructor for class repicea.io.RelativePathFile
Constructor 2.
RelativePathFile(File, File) - Constructor for class repicea.io.RelativePathFile
Constructor 3.
relativizeTheseFile(File, File) - Static method in class repicea.util.ObjectUtility
This method relativize a given file with respect to a parent file.
RemoteActionListener - Class in repicea.net
 
RemoteActionListener(int, Class<?>) - Constructor for class repicea.net.RemoteActionListener
 
RemoteEvent - Class in repicea.net
The RemoteEvent class is a wrapper for an EventObject instance.
RemoteEvent(int, EventObject) - Constructor for class repicea.net.RemoteEvent
The constructor requires the hashcode of the target (local) listener and an EventObject instance.
RemoteEventExecutor - Class in repicea.net
This class handles a combination of listener:event.
RemoteEventExecutor(EventListener, EventObject) - Constructor for class repicea.net.RemoteEventExecutor
Protected constructor with unchecked listener and event.
RemoteEventManager - Class in repicea.net
 
RemoteEventManager(SocketWrapper) - Constructor for class repicea.net.RemoteEventManager
 
RemoteEventManager.InternalCall - Enum in repicea.net
 
RemoteListener - Class in repicea.net
The RemoteListener class is an abstract class for all listeners that work from a remote location.
RemoteListener(int, Class<?>) - Constructor for class repicea.net.RemoteListener
 
RemotePropertyChangeListener - Class in repicea.net
 
RemotePropertyChangeListener(int, Class<?>) - Constructor for class repicea.net.RemotePropertyChangeListener
 
remove(int, int) - Method in class repicea.gui.components.NumberFormatFieldFactory.NumberFieldDocument
 
remove(Component) - Method in class repicea.gui.dnd.DnDPanel
 
remove(Object) - Method in class repicea.util.Index
 
removeAll() - Method in class repicea.gui.components.REpiceaTableModel
 
removeChangeListener(DatasetChangeListener) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
removeComboBoxEntryPropertyListener(PropertyChangeListener) - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
removeElements(List<Integer>) - Method in class repicea.math.Matrix
This method makes it possible to remove some elements in a particular matrix
removeExportOption(Enum) - Method in class repicea.io.tools.ExportTool
Deprecated.
This method makes it possible to remove one export option if desired.
removeExportOption(Enum) - Method in class repicea.io.tools.REpiceaExportTool
This method makes it possible to remove one export option if desired.
removeField(int) - Method in class repicea.io.GExportRecord
This method makes it possible to remove a field from the records
removeLayoutComponent(Component) - Method in class repicea.simulation.processsystem.SystemLayout
 
removeMarketModel(ProductionLine) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
removeModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014Predictor
 
removeModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
 
removeModelBasedSimulatorListener(REpiceaPredictorListener) - Method in class repicea.simulation.REpiceaPredictor
This method removes the listener instance from the list of listeners.
removeNumberFieldListener(NumberFormatFieldFactory.NumberFieldListener) - Method in class repicea.gui.components.NumberFormatFieldFactory.JFormattedNumericField
This method removes a listener from the list of listener if it is already contained in the list.
removeObject(P) - Method in interface repicea.gui.ListManager
This method remove the UserInterfaceableObject-derived instance from the list.
removeObject(Processor) - Method in class repicea.simulation.processsystem.SystemManager
 
removeOptimizerListener(OptimizerListener) - Method in class repicea.math.optimizer.AbstractOptimizer
 
removeProcessorButton(ProcessorButton) - Method in class repicea.simulation.processsystem.SystemPanel
 
removeProductionLineManagerChangeListener(ProductionLineManagerChangeListener) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method removes a ProductionLineManagerChangeListener instance from the listeners.
removePropertyChangeListener(PropertyChangeListener) - Method in interface repicea.multiprocess.IndependentProcess
This method removes all the instances of the listener among the listeners of this class.
removePropertyChangeListener(PropertyChangeListener) - Method in class repicea.net.server.AbstractServer
 
removePropertyChangeListener(PropertyChangeListener) - Method in class repicea.util.PropertyChangeEventGeneratingClass
This method removes a particular PropertyChangeListener instance from the list of listeners.
removeSubpanel(D) - Method in class repicea.gui.dnd.DnDPanel
This method removes the UserInterfaceableObject parameter from the list and then refresh the interface.
removeSubProcessor(Processor) - Method in class repicea.simulation.processsystem.Processor
This method removes a process from the sub processes.
removeTreeLoggerChangeListener(TreeLoggerChangeListener) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
This method removes a TreeLoggerChangeListener instance to the listeners only and only if the listeners already contain the instance.
removeTreeLoggerListener(PropertyChangeListener) - Method in class repicea.simulation.treelogger.TreeLogger
This method removes the instance listener from the listeners.
removeUser(Object) - Static method in class repicea.io.javasql.DatabaseConnectionManager
This method removes the user from the ConnectionUsers Map and eventually closes the connection if there is no user left.
removeWindowTrackerListener(UIToolKit.WindowTrackerListener) - Static method in class repicea.gui.UIToolKit
 
REnvironment - Class in repicea.lang.codetranslator
 
REnvironment() - Constructor for class repicea.lang.codetranslator.REnvironment
 
repeat(int, int) - Method in class repicea.math.Matrix
This method repeats this matrix a given number of times in each dimension.
repicea.app - package repicea.app
 
repicea.console - package repicea.console
 
repicea.gui - package repicea.gui
 
repicea.gui.components - package repicea.gui.components
 
repicea.gui.dnd - package repicea.gui.dnd
 
repicea.gui.genericwindows - package repicea.gui.genericwindows
 
repicea.gui.icons - package repicea.gui.icons
 
repicea.gui.permissions - package repicea.gui.permissions
 
repicea.gui.popup - package repicea.gui.popup
 
repicea.io - package repicea.io
 
repicea.io.javacsv - package repicea.io.javacsv
 
repicea.io.javadbf - package repicea.io.javadbf
 
repicea.io.javasql - package repicea.io.javasql
 
repicea.io.tools - package repicea.io.tools
 
repicea.lang - package repicea.lang
 
repicea.lang.codetranslator - package repicea.lang.codetranslator
 
repicea.lang.reflect - package repicea.lang.reflect
 
repicea.math - package repicea.math
 
repicea.math.formula - package repicea.math.formula
 
repicea.math.optimizer - package repicea.math.optimizer
 
repicea.multiprocess - package repicea.multiprocess
 
repicea.net - package repicea.net
 
repicea.net.server - package repicea.net.server
 
repicea.net.server.gui - package repicea.net.server.gui
 
repicea.serial - package repicea.serial
 
repicea.serial.cloner - package repicea.serial.cloner
 
repicea.serial.xml - package repicea.serial.xml
 
repicea.simulation - package repicea.simulation
 
repicea.simulation.allometrycalculator - package repicea.simulation.allometrycalculator
 
repicea.simulation.climate - package repicea.simulation.climate
 
repicea.simulation.covariateproviders.plotlevel - package repicea.simulation.covariateproviders.plotlevel
 
repicea.simulation.covariateproviders.treelevel - package repicea.simulation.covariateproviders.treelevel
 
repicea.simulation.disturbances - package repicea.simulation.disturbances
 
repicea.simulation.hdrelationships - package repicea.simulation.hdrelationships
 
repicea.simulation.processsystem - package repicea.simulation.processsystem
 
repicea.simulation.species - package repicea.simulation.species
 
repicea.simulation.stemtaper - package repicea.simulation.stemtaper
 
repicea.simulation.treelogger - package repicea.simulation.treelogger
 
repicea.stats - package repicea.stats
 
repicea.stats.data - package repicea.stats.data
 
repicea.stats.distributions - package repicea.stats.distributions
 
repicea.stats.distributions.utility - package repicea.stats.distributions.utility
 
repicea.stats.estimates - package repicea.stats.estimates
 
repicea.stats.estimators - package repicea.stats.estimators
 
repicea.stats.integral - package repicea.stats.integral
 
repicea.stats.model - package repicea.stats.model
 
repicea.stats.model.glm - package repicea.stats.model.glm
 
repicea.stats.model.glm.copula - package repicea.stats.model.glm.copula
 
repicea.stats.model.lm - package repicea.stats.model.lm
 
repicea.stats.sampling - package repicea.stats.sampling
 
repicea.util - package repicea.util
 
REpiceaAWTProperty - Class in repicea.gui
 
REpiceaAWTProperty(String) - Constructor for class repicea.gui.REpiceaAWTProperty
 
REpiceaBinaryEventPredictor<S,T> - Class in repicea.simulation
This REpiceaBinaryEventPredictor class implements logistic and other models that aim at predicting the occurrence of binary event.
REpiceaBinaryEventPredictor(boolean, boolean, boolean) - Constructor for class repicea.simulation.REpiceaBinaryEventPredictor
 
REpiceaCellEditor - Class in repicea.gui.components
The REpiceaCellEditor is the CellEditor class for REpiceaTable.
REpiceaCellEditor(JTextField, REpiceaTableModel) - Constructor for class repicea.gui.components.REpiceaCellEditor
 
REpiceaCellEditor(JCheckBox, REpiceaTableModel) - Constructor for class repicea.gui.components.REpiceaCellEditor
 
REpiceaCellEditor(JComboBox<?>, REpiceaTableModel) - Constructor for class repicea.gui.components.REpiceaCellEditor
 
REpiceaClimateChangeGenerator<P extends GeographicalCoordinatesProvider> - Interface in repicea.simulation.climate
The REpiceaClimateChangeGenerator interface ensures that the climate generator also predicts the climate change and as such it can produce annual change for different climate variables.
REpiceaClimateChangeTrend - Class in repicea.simulation.climate
 
REpiceaClimateChangeTrend() - Constructor for class repicea.simulation.climate.REpiceaClimateChangeTrend
 
REpiceaClimateGenerator<P extends GeographicalCoordinatesProvider> - Interface in repicea.simulation.climate
The REpiceaClimateGenerator interface ensures that the climate generator returns a REpiceaClimateVariableMap instance.
REpiceaClimateGenerator.RepresentativeConcentrationPathway - Enum in repicea.simulation.climate
 
REpiceaClimateVariableChangeMap - Class in repicea.simulation.climate
This map contains the annual change for the difference climate variables.
REpiceaClimateVariableChangeMap() - Constructor for class repicea.simulation.climate.REpiceaClimateVariableChangeMap
 
REpiceaClimateVariableMap - Class in repicea.simulation.climate
 
REpiceaClimateVariableMap() - Constructor for class repicea.simulation.climate.REpiceaClimateVariableMap
 
REpiceaClimateVariableMap.ClimateVariable - Enum in repicea.simulation.climate
 
REpiceaClimateVariableMap.UpdatableClimateVariableMap - Interface in repicea.simulation.climate
This interface ensures that the REpiceaClimateVariableMap instance can be updated according to climate change forecasts.
REpiceaCodeTranslator - Interface in repicea.lang.codetranslator
This interface ensures that the instance can process request (String) coming from other languages and can convert them into Java objects or methods.
REpiceaComboBoxOpenButton<P extends REpiceaShowableUIWithParent> - Class in repicea.gui.components
 
REpiceaComboBoxOpenButton(String, REpiceaGUIPermission) - Constructor for class repicea.gui.components.REpiceaComboBoxOpenButton
Specific constructor with eventual restricted permissions.
REpiceaComboBoxOpenButton(String) - Constructor for class repicea.gui.components.REpiceaComboBoxOpenButton
Default constructor with permissions granted.
REpiceaDialog - Class in repicea.gui
A generic modal dialog that ensures that the method cancelAction is called when the dialog can be closed.
REpiceaDialog(Window) - Constructor for class repicea.gui.REpiceaDialog
Constructor 1 with a Window parent.
REpiceaDialog() - Constructor for class repicea.gui.REpiceaDialog
Constructor 2 with no parent at all.
REpiceaEventFireComponent - Interface in repicea.gui
This interface ensures the visibility of the protected method firePropertyChange(String, Object, Object) in the Component class.
REpiceaExportTool - Class in repicea.io.tools
The REpiceaExportTool class is an abstract class that can save a file from particular record sets.
REpiceaExportTool(boolean) - Constructor for class repicea.io.tools.REpiceaExportTool
General constructor.
REpiceaExportTool() - Constructor for class repicea.io.tools.REpiceaExportTool
General constructor with multiple selection mode set to false.
REpiceaExportTool.FieldName - Enum in repicea.io.tools
The FieldName enum class defines the field names during the export.
REpiceaExportTool.InternalSwingWorkerForRecordSet - Class in repicea.io.tools
The abstract InternalSwingWorkerForRecordSet class is derived from the AbstractGenericTask class.
REpiceaExportToolDialog - Class in repicea.io.tools
The REpiceaExportToolDialog class is the user interface of the REpiceaExportTool class.
REpiceaExportToolDialog(REpiceaExportTool, Window) - Constructor for class repicea.io.tools.REpiceaExportToolDialog
Constructor.
REpiceaExportToolDialog.MessageID - Enum in repicea.io.tools
 
REpiceaFrame - Class in repicea.gui
This class is the main class for any JFrame.
REpiceaFrame(Window) - Constructor for class repicea.gui.REpiceaFrame
Protected constructor with owner.
REpiceaFrame() - Constructor for class repicea.gui.REpiceaFrame
Protected constructor without owner.
REpiceaGenericShowDialog - Class in repicea.gui.genericwindows
 
REpiceaGenericShowDialog(Window, String) - Constructor for class repicea.gui.genericwindows.REpiceaGenericShowDialog
Constructor.
REpiceaGUIPermission - Interface in repicea.gui.permissions
The REpiceaGUIPermission interface provides the basic method for granting some permissions to the component.
REpiceaGUIPermissionProvider - Interface in repicea.gui.permissions
This interface ensures the component can return its permissions.
REpiceaIcon - Static variable in class repicea.gui.UIControlManager
 
REpiceaIOFileHandlerUI - Class in repicea.io
The IOFileHandlerUI class handles the save, save as and load actions in REpicea windows.
REpiceaIOFileHandlerUI(IOUserInterface, IOUserInterfaceableObject, AbstractButton, AbstractButton, AbstractButton) - Constructor for class repicea.io.REpiceaIOFileHandlerUI
 
REpiceaIOFileHandlerUI.MessageID - Enum in repicea.io
 
REpiceaJARSVNAppVersion - Class in repicea.app
This class retrieves information on the version and other features of the repicea.jar application.
REpiceaLicenseWindow - Class in repicea.gui.genericwindows
 
REpiceaLicenseWindow(Window, String) - Constructor for class repicea.gui.genericwindows.REpiceaLicenseWindow
Constructor.
REpiceaLicenseWindow.ControlID - Enum in repicea.gui.genericwindows
 
REpiceaLookAndFeelMenu - Class in repicea.gui
 
REpiceaLookAndFeelMenu(REpiceaFrame) - Constructor for class repicea.gui.REpiceaLookAndFeelMenu
 
REpiceaLookAndFeelMenu.MessageID - Enum in repicea.gui
 
REpiceaMatchSelector<E extends java.lang.Enum<E>> - Class in repicea.gui.components
The REpiceaMatchSelector class has a Map that related some strings to an enum variable.
REpiceaMatchSelector(Object[], Enum<E>[], Enum<E>, Object[]) - Constructor for class repicea.gui.components.REpiceaMatchSelector
Official constructor
REpiceaMatchSelectorDialog - Class in repicea.gui.components
The REpiceaMatchSelectorDialog class is the user interface of the REpiceaMatchSelector.
REpiceaMatchSelectorDialog(REpiceaMatchSelector<?>, Window, Object[]) - Constructor for class repicea.gui.components.REpiceaMatchSelectorDialog
 
REpiceaMemorizerHandler - Class in repicea.serial
 
REpiceaMemorizerHandler(OwnedWindow, AbstractButton, AbstractButton) - Constructor for class repicea.serial.REpiceaMemorizerHandler
Constructor for full implementation.
REpiceaMemorizerHandler(OwnedWindow) - Constructor for class repicea.serial.REpiceaMemorizerHandler
Constructor for light implementation.
REpiceaMenuItem - Class in repicea.gui
The RepiceaMenuItem class extends the JMenuItem class.
REpiceaMenuItem(GenericTaskFactory) - Constructor for class repicea.gui.REpiceaMenuItem
Constructor with a single task to do and no name so far.
REpiceaMenuItem(String, GenericTaskFactory) - Constructor for class repicea.gui.REpiceaMenuItem
Constructor with many tasks to do.
REpiceaPanel - Class in repicea.gui
The REpiceaPanel implements the AncestorListener interface.
REpiceaPanel() - Constructor for class repicea.gui.REpiceaPanel
General constructor.
REpiceaPopupListener - Class in repicea.gui.popup
The REpiceaPopupListener shows its REpiceaPopupMenu when invoked.
REpiceaPopupListener(REpiceaPopupMenu) - Constructor for class repicea.gui.popup.REpiceaPopupListener
 
REpiceaPopupMenu - Class in repicea.gui.popup
The REpiceaPopupMenu provides on the fly options for GUI.
REpiceaPopupMenu(ActionListener, JMenuItem...) - Constructor for class repicea.gui.popup.REpiceaPopupMenu
Constructor.
REpiceaPredictor - Class in repicea.simulation
This class is the basic class for all models that are designed for predictions.
REpiceaPredictor(boolean, boolean, boolean) - Constructor for class repicea.simulation.REpiceaPredictor
General constructor for all combinations of uncertainty sources.
REpiceaPredictor.CruiseLine - Class in repicea.simulation
This class creates a fake subject for cruise line random effects.
REpiceaPredictor.ErrorTermGroup - Enum in repicea.simulation
 
REpiceaPredictor.IntervalNestedInPlotDefinition - Class in repicea.simulation
This class creates a fake subject for interval random effects nested in the plots.
REpiceaPredictorEvent - Class in repicea.simulation
 
REpiceaPredictorEvent(REpiceaPredictorEvent.ModelBasedSimulatorEventProperty, Object, Object, REpiceaPredictor) - Constructor for class repicea.simulation.REpiceaPredictorEvent
 
REpiceaPredictorEvent.ModelBasedSimulatorEventProperty - Class in repicea.simulation
 
REpiceaPredictorListener - Interface in repicea.simulation
 
REpiceaProgressBarDialog - Class in repicea.gui.genericwindows
This dialog only contains a progress bar that listen to the SwingWorker progress.
REpiceaProgressBarDialog(Window, String, String, SwingWorker, boolean) - Constructor for class repicea.gui.genericwindows.REpiceaProgressBarDialog
Deprecated.
Use the constructor with REpiceaProgressBarDialogParameters instead
REpiceaProgressBarDialog(String, String, SwingWorker, boolean) - Constructor for class repicea.gui.genericwindows.REpiceaProgressBarDialog
Deprecated.
Use the constructor with REpiceaProgressBarDialogParameters instead
REpiceaProgressBarDialog(Window, String, List<REpiceaProgressBarDialog.REpiceaProgressBarDialogParameters>) - Constructor for class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
REpiceaProgressBarDialog.REpiceaProgressBarDialogParameters - Class in repicea.gui.genericwindows
 
REpiceaProgressBarDialogParameters(String, SwingWorker, boolean) - Constructor for class repicea.gui.genericwindows.REpiceaProgressBarDialog.REpiceaProgressBarDialogParameters
 
REpiceaRandom - Class in repicea.stats
 
REpiceaRandom() - Constructor for class repicea.stats.REpiceaRandom
 
REpiceaRecordReader - Class in repicea.io.tools
The RecordReader class does two things: 1- it defines the field to be imported and 2- it reads the different records.
REpiceaRecordReader() - Constructor for class repicea.io.tools.REpiceaRecordReader
Constructor for GUI mode.
REpiceaRecordReader.InternalTask - Class in repicea.io.tools
 
REpiceaRecordReader.MessageID - Enum in repicea.io.tools
 
REpiceaRecordReader.NullInThisFieldException - Exception in repicea.io.tools
 
REpiceaRecordReader.VariableValueException - Exception in repicea.io.tools
 
REpiceaRecordSet - Class in repicea.io
This subclass of ArrayList only implements an additional method in order to enable the selection of subsets of GExportRecord objects.
REpiceaRecordSet() - Constructor for class repicea.io.REpiceaRecordSet
General constructor for this class.
REpiceaScrollPane - Class in repicea.gui.components
The REpiceaScrollPane is a JScrollPane that enables the mouse dragging in any direction.
REpiceaScrollPane(Container) - Constructor for class repicea.gui.components.REpiceaScrollPane
Constructor.
REpiceaScrollPane() - Constructor for class repicea.gui.components.REpiceaScrollPane
 
REpiceaScrollPane.InternalDragGestureMoveComponentHandler - Class in repicea.gui.components
 
REpiceaScrollPane.REpiceaViewport - Class in repicea.gui.components
 
REpiceaShowableUI - Interface in repicea.gui
This interface applies to classes that hold their GUI Interface as a member and can show it.
REpiceaShowableUIWithParent - Interface in repicea.gui
This interface applies to classes that hold their GUI Interface as a member and can show it.
REpiceaSimpleListDialog - Class in repicea.gui.genericwindows
This dialog is a generic dialog that shows a list.
REpiceaSimpleListDialog(Window, Vector, String, String, boolean) - Constructor for class repicea.gui.genericwindows.REpiceaSimpleListDialog
General constructor.
REpiceaSimpleListDialog(Window, Vector<?>, String, String) - Constructor for class repicea.gui.genericwindows.REpiceaSimpleListDialog
Constructor 2.
REpiceaSimpleListDialog(Vector<String>, String, String) - Constructor for class repicea.gui.genericwindows.REpiceaSimpleListDialog
Constructor 3.
REpiceaSlider - Class in repicea.gui.components
The REpiceaSlider class is a wrapper for a JSlider and a JLabel instance.
REpiceaSlider(String, REpiceaSlider.Position, int, int) - Constructor for class repicea.gui.components.REpiceaSlider
General constructor.
REpiceaSlider(REpiceaSlider.Position) - Constructor for class repicea.gui.components.REpiceaSlider
Constructor with token set as "%" and minimum and maximum values respectively set to 0 and 100 for the slider.
REpiceaSlider() - Constructor for class repicea.gui.components.REpiceaSlider
Constructor with token set as "%" and minimum and maximum values respectively set to 0 and 100 for the slider.
REpiceaSlider.Position - Enum in repicea.gui.components
 
REpiceaSliderGroup - Class in repicea.gui.components
The REpiceaSliderGroup class acts like a ButtonGroup but for REpiceaSlider instances instead of JButton instances.
REpiceaSliderGroup(int) - Constructor for class repicea.gui.components.REpiceaSliderGroup
Constructor.
REpiceaSpecies - Class in repicea.simulation.species
 
REpiceaSpecies() - Constructor for class repicea.simulation.species.REpiceaSpecies
 
REpiceaSpecies.Species - Enum in repicea.simulation.species
 
REpiceaSplashWindow - Class in repicea.gui.genericwindows
GenericSplashWindow - A welcome window to show acknowledgements and logo Stays visible during the specified time in the constructor.
REpiceaSplashWindow(String, double, Component) - Constructor for class repicea.gui.genericwindows.REpiceaSplashWindow
The constructor requires a file that contains a logo and a number of seconds.
REpiceaSplashWindow(String, double, Component, String) - Constructor for class repicea.gui.genericwindows.REpiceaSplashWindow
The constructor requires a file that contains a logo and a number of seconds.
REpiceaSystem - Class in repicea.lang
The REpiceaSystem offers some additional features to the System class.
REpiceaSystem() - Constructor for class repicea.lang.REpiceaSystem
 
REpiceaTabbedPane - Class in repicea.gui.components
The REpiceaTabbedPane class extends JTabbedPane.
REpiceaTabbedPane(boolean) - Constructor for class repicea.gui.components.REpiceaTabbedPane
General constructor.
REpiceaTabbedPane() - Constructor for class repicea.gui.components.REpiceaTabbedPane
Usual constructor.
REpiceaTabbedPane.TabTitleComponent - Class in repicea.gui.components
 
REpiceaTable - Class in repicea.gui.components
The REpiceaTable is a JTable with additional methods.
REpiceaTable(REpiceaTableModel, boolean) - Constructor for class repicea.gui.components.REpiceaTable
General constructor.
REpiceaTable(REpiceaTableModel) - Constructor for class repicea.gui.components.REpiceaTable
Default constructor with popup menu enabled.
REpiceaTableModel - Class in repicea.gui.components
The REpiceaTableModel is the model for the REpiceaTable class.
REpiceaTableModel(Object[]) - Constructor for class repicea.gui.components.REpiceaTableModel
 
REpiceaTableModel(DataSet) - Constructor for class repicea.gui.components.REpiceaTableModel
 
REpiceaTipDialog - Class in repicea.gui.genericwindows
 
REpiceaTipDialog(Window, String, String) - Constructor for class repicea.gui.genericwindows.REpiceaTipDialog
Constructor.
REpiceaTipDialog.MessageID - Enum in repicea.gui.genericwindows
 
REpiceaTranslator - Class in repicea.util
The REpiceaTranslator class handles the translation to another language.
REpiceaTranslator() - Constructor for class repicea.util.REpiceaTranslator
 
REpiceaTranslator.Language - Enum in repicea.util
 
REpiceaTranslator.TextableEnum - Interface in repicea.util
 
REpiceaUIObject - Interface in repicea.gui
This interface applies to classes that hold their GUI Interface as a member.
REpiceaUIObjectWithParent - Interface in repicea.gui
This interface applies to classes that hold their GUI Interface as a member.
REpiceaViewport() - Constructor for class repicea.gui.components.REpiceaScrollPane.REpiceaViewport
 
REpiceaWindow - Interface in repicea.gui
This interface provides common methods for REpiceaFrame and REpiceaDialog instances.
replace(int, int, String, AttributeSet) - Method in class repicea.gui.components.NumberFormatFieldFactory.NumberFieldDocument
 
ReplaceTextTransferHandler - Class in repicea.gui.dnd
This TransferHandler-derived class handles the drag and drop from a JList, JLabel, or JTextComponent instance to any class that implements the setText method (typically a JLabel or a JTextField instance).
ReplaceTextTransferHandler(Component) - Constructor for class repicea.gui.dnd.ReplaceTextTransferHandler
 
requestShutdown() - Method in class repicea.app.AbstractGenericEngine
This method requests the Engine to shut down.
requestShutdown() - Method in class repicea.net.server.AbstractServer
 
requestShutdown() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
rescalingFactors - Variable in class repicea.stats.integral.NumericalIntegrationMethod
 
reset() - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
reset() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
reset() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
 
reset() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
reset() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
This method resets the singleton of this class.
reset() - Method in interface repicea.gui.Resettable
This method reinitializes some fields of the instance that implements this interface.
reset() - Method in class repicea.serial.REpiceaMemorizerHandler
 
reset() - Method in class repicea.simulation.processsystem.SystemManager
 
reset - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
reset() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
reset() - Method in class repicea.simulation.processsystem.SystemPanel
 
reset() - Method in class repicea.simulation.processsystem.TestProcessUnit
 
reset() - Method in class repicea.simulation.processsystem.ToolPanel
 
reset() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
reset() - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
resetCarbon() - Method in class lerfob.carbonbalancetool.CATCompartment
This method initializes the carbon map array.
resetCarbonUnitMap() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method reinitializes the two collections that contains the carbon units left in the forest and those sent to the landfill.
resetCarbonUnitMap() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
resetCompartmentsAndSetCarbonUnitCollections() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
resetManager() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
resetMatrix() - Method in class repicea.math.Matrix
This method reset all the elements of this Matrix instance to 0.
resetModifiers() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
 
Resettable - Interface in repicea.gui
The Resettable interface ensures a particular instance can be reset.
RESIDUAL_ERROR_DEVIATE_JUST_GENERATED - Static variable in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
residualImplementation(Tree, double) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method accounts for a random deviate if the residual variability is enabled.
respondToWindowClosing() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
By default, closing the gui shuts the engine down.
respondToWindowClosing() - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
restartAction() - Method in class repicea.net.server.ClientThread
 
retrieve() - Method in class repicea.serial.cloner.BasicSerialCloner
This method returns the serialized object.
retrieveAllFieldsFromClass(Class<?>) - Static method in class repicea.lang.reflect.ReflectUtility
This static method returns all the fields from a class including those inherited.
retrieveArgument(String, List<String>) - Static method in class repicea.lang.REpiceaSystem
This method scan the arguments for a particular option and returns the value of that option.
retrieveFormerLocation() - Method in class repicea.simulation.processsystem.ProcessorButton
 
retrieveIcon(Class<?>, String) - Static method in class repicea.gui.CommonGuiUtility
This method retrieves the icon in a specific package.
retrieveSimulationSummary() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method retrieves the simulation results after calling the calculateCarbon method.
REVISION_STRING - Static variable in class repicea.app.AbstractAppVersionCompiler
 
rootExpansionFactorBroadleaved - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
rootExpansionFactorConiferous - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
rootExpansionFactorFromModel - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
rootExpansionFactorFromModelEnabled - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
rootExpansionFactors - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
rootFromModelChkBox - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
rowIndex - Variable in class repicea.stats.estimates.Estimate
 
run() - Method in class repicea.app.Logger
 
run() - Method in class repicea.multiprocess.IndependentProcessIncomingCommunicationWorker
 
run() - Method in class repicea.net.RemoteEventExecutor
 
run() - Method in class repicea.net.server.ClientThread
 
run() - Method in class repicea.simulation.treelogger.TreeLogger
 
run() - Method in class repicea.util.PropertyChangeEventExecutor
 
runInnerOptimisation(AbstractMathematicalFunction, List<Integer>, Matrix, Matrix, double, AbstractOptimizer.LineSearchMethod) - Method in class repicea.math.optimizer.NewtonRaphsonOptimizer
This method optimize the log-likelihood function using the Newton-Raphson optimisation step.

S

samplingUnitID - Variable in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
SamplingUnitIDProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures that the tree instance knows the id of the sample plot in which it is located.
SamplingUtility - Class in repicea.stats.sampling
 
SamplingUtility() - Constructor for class repicea.stats.sampling.SamplingUtility
 
SASParameterEstimates - Class in repicea.simulation
The SASParameterEstimates class is customized for SAS outputs.
SASParameterEstimates(Matrix, Matrix) - Constructor for class repicea.simulation.SASParameterEstimates
Constructor.
save(String) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
save(String) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
save(String) - Method in class repicea.gui.components.REpiceaMatchSelector
 
save(String) - Method in interface repicea.io.Saveable
This method saves the records in a file denominated by the filename parameter.
save(File, Enum) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
save() - Method in class repicea.io.tools.ExportTool
Deprecated.
This method save the record set into a dbf file.
save(String) - Method in class repicea.io.tools.ImportFieldManager
 
save(String) - Method in class repicea.simulation.processsystem.SystemManager
 
save - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
save() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method saves the parameters in the current filename.
save(String) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
save(String) - Method in class repicea.stats.data.DataSet
 
Saveable - Interface in repicea.io
 
saveAction() - Method in class repicea.io.REpiceaIOFileHandlerUI
 
saveAs - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
saveAsAction() - Method in class repicea.io.REpiceaIOFileHandlerUI
 
saveDefaultValues() - Method in class repicea.io.tools.ImportFieldManager
This method saves the values of the properties.
saveFileEnabled - Variable in class repicea.io.tools.REpiceaExportTool
 
saveSettings() - Method in class repicea.app.SettingMemory
This method serializes the settings in the file denoted by the filename variable.
scalarAdd(double) - Method in class repicea.math.Matrix
This method adds the scalar d to all the elements of the current matrix.
scalarMultiply(double) - Method in class repicea.math.Matrix
This method multiplies the elements of the current matrix by the scalar d.
scalarMultiply(Matrix, double) - Static method in class repicea.math.MatrixUtility
This method multiplies all the element of a matrix by a double.
scaleMap(Map, double) - Static method in class repicea.simulation.processsystem.AmountMap
This method scales the AmountMap instances contained in more complex Map instances.
SelectableJButton - Class in repicea.simulation.processsystem
 
SelectableJButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.SelectableJButton
 
selectAnOptionTextArea - Variable in class repicea.io.tools.ExportToolDialog
Deprecated.
 
selectAnOptionTextArea - Variable in class repicea.io.tools.REpiceaExportToolDialog
 
selectCalculatorFunction(CATCompartment) - Method in class lerfob.carbonbalancetool.CATCompartmentCompileLibrary
This method implements the functions for calculating and integrating the carbon over the forecast period.
selectedAR - Static variable in class lerfob.carbonbalancetool.CATSettings
 
selectedDistributionType - Variable in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameterWrapper
 
selectedExportOptions - Variable in class repicea.io.tools.ExportTool
Deprecated.
 
selectedExportOptions - Variable in class repicea.io.tools.REpiceaExportTool
 
selectSubsetInRecordSet(String, Object) - Method in class repicea.io.GRecordSet
Deprecated.
This method makes it possible to select records that match particular value in a given field.
selectSubsetInRecordSet(String, Object) - Method in class repicea.io.REpiceaRecordSet
This method makes it possible to select records that match particular value in a given field.
sendEventToOriginalListener(EventObject) - Method in class repicea.net.RemoteListener
 
sendLocalListeners(List<EventListener>) - Method in class repicea.net.RemoteEventManager
This method sends the local listeners.
sendObjectToProcess(Serializable) - Method in interface repicea.multiprocess.IndependentProcess
This method makes it possible to send a Serializable object to the independent process, typically a callback process.
sendToTheLandfill(int, AmountMap<CarbonUnit.Element>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method sends a piece of wood to the landfill site.
sendVetoDisabledOnDispatchThread() - Method in class repicea.gui.dnd.DnDPanel
 
SensitivityAnalysisParameter<E extends Estimate> - Class in repicea.simulation
The SensitivityAnalysisParameter class is an abstract class for the implementation of varying parameters in a sensitivity analysis.
SensitivityAnalysisParameter(boolean) - Constructor for class repicea.simulation.SensitivityAnalysisParameter
 
sensitivityParameterMap - Variable in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
SerialCloner<P> - Interface in repicea.serial.cloner
The SerialCloner interface ensures the instance can clone the object.
ServerConfiguration - Class in repicea.net.server
 
ServerConfiguration(int, int, int, Integer) - Constructor for class repicea.net.server.ServerConfiguration
Constructor.
ServerConfiguration(int, ServerConfiguration.Protocol) - Constructor for class repicea.net.server.ServerConfiguration
Configuration for local server
ServerConfiguration.Protocol - Enum in repicea.net.server
 
ServerDialog - Class in repicea.net.server.gui
This class is the gui interface of the CapsisServer class.
ServerDialog(ServerInterfaceEngine) - Constructor for class repicea.net.server.gui.ServerDialog
 
ServerInterfaceEngine - Class in repicea.net.server.gui
 
ServerSideRemoteEventConnector - Class in repicea.net.server
 
ServerSideRemoteEventConnector(SocketWrapper, AbstractServer) - Constructor for class repicea.net.server.ServerSideRemoteEventConnector
 
ServerTask - Class in repicea.net.server
 
ServerTask(ServerTask.ServerTaskID, AbstractServer) - Constructor for class repicea.net.server.ServerTask
 
ServerTask.ServerTaskID - Enum in repicea.net.server
 
set(int, T) - Method in class repicea.math.FastArrayList
 
setAllAvailableOptions() - Method in class lerfob.carbonbalancetool.io.CATExportTool
This method sets the selected options to all the possible options.
setAllocatedMemoryJVM(int) - Method in class repicea.console.TriggerSettings
 
setAppendFileEnabled(boolean) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
setAppendFileEnabled(boolean) - Method in class repicea.io.tools.REpiceaExportTool
If set to true, the export tool does not delete the file but rather it appends the records to the existing file.
setAreaHA(double) - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
This method sets the area of the plot to be processed.
setAssessmentReportForGWP(CATSettings.AssessmentReport) - Static method in class lerfob.carbonbalancetool.CATSettings
This method set the assessment report for the Global Warming Potential factors.
setAvailableTreeLoggers(Vector<TreeLoggerDescription>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
This method sets the list of tree logger descriptions.
setAverageIntake(double) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
setAverageLifetime(double) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
setAverageSubstitution(double) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
setAverageYield(double) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
setBasicTrendModifier(FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies, int, int, double) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method makes it possible to induce price changes over time for a particular species.
setBasicTrendModifier(int, int, double) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method makes it possible to induce price changes over time for all species.
setBeta(Matrix) - Method in class repicea.math.AbstractMathematicalFunction
This method sets the vector of parameters.
setBeta(Matrix) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
setBeta(Matrix) - Method in class repicea.stats.model.CompositeLogLikelihood
 
setBeta(Matrix) - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
setBiomassParameters(String) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method sets the biomass parameters for the next simulation in script mode.
setBiomassParameters() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
setBlupsForThisSubject(MonteCarloSimulationCompliantObject, Estimate<? extends StandardGaussianDistribution>) - Method in class repicea.simulation.REpiceaPredictor
 
setBorderColor(Color) - Method in class repicea.simulation.processsystem.SelectableJButton
 
setBorderWidth(int) - Method in class repicea.simulation.processsystem.SelectableJButton
 
setBottomComponent(JPanel) - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
 
setBounds(int, ParameterBound) - Method in class repicea.math.AbstractMathematicalFunction
This method sets a bound for a particular parameter
setBounds(int, ParameterBound) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
setBounds(Integer, ParameterBound) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
setBoundValue(Matrix) - Method in class repicea.stats.distributions.BasicBound
 
setBoundValue(Matrix) - Method in class repicea.stats.distributions.TruncatedGaussianDistribution.Bound
 
setBypassTimeout(boolean) - Method in class repicea.net.server.BasicClient
 
setCalculateCarbonButtonsEnabled(boolean) - Method in class lerfob.carbonbalancetool.CATFrame
 
setCaller(CarbonUnitFeature) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
setCanceled(boolean) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
setCanceled(boolean) - Method in class repicea.io.tools.REpiceaExportTool
 
setCancelOnClose(boolean) - Method in class repicea.gui.REpiceaDialog
This method defines the action to be undertaken when the window is closed by clicking on the "x".
setCancelOnClose(boolean) - Method in class repicea.gui.REpiceaFrame
This method defines the action to be undertaken when the window is closed by clicking on the "x".
setCarbonIntoArray(int, double) - Method in class lerfob.carbonbalancetool.CATCompartment
 
setCarbonUnitsArray(Collection<? extends CarbonUnit>[]) - Method in class lerfob.carbonbalancetool.CATCompartment
 
setChanged(boolean) - Method in class lerfob.carbonbalancetool.productionlines.AbstractProcessorButton
 
setChanged(boolean) - Method in class repicea.simulation.processsystem.ProcessorButton
 
setCharactersetName(String) - Method in class repicea.io.javadbf.DBFReader
 
setCharactersetName(String) - Method in class repicea.io.javadbf.DBFWriter
 
setClassicalOptions(String[]) - Static method in class repicea.lang.REpiceaSystem
This static methods processes the arguments given to the main function in a very classical manner.
setClassPath(String) - Method in class repicea.multiprocess.JavaProcess
This method sets the classpath.
setClimateChangeGenerator(REpiceaClimateChangeGenerator<? extends GeographicalCoordinatesProvider>) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018Predictor
Sets a climate change generator that will impact the internal climate generator for the HD relationship.
setColors(AsymmetricalCategoryDataset) - Method in class lerfob.carbonbalancetool.gui.EnhancedStatisticalBarRenderer
 
setCommunicationPort(int) - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
setCompleteLLK() - Method in class repicea.stats.model.AbstractStatisticalModel
This method sets the log-likelihood function of the model.
setCompleteLLK() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
setCompleteLLK() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
setCompleteLLK() - Method in class repicea.stats.model.lm.LinearModel
 
setConnector(RemoteEventManager) - Method in class repicea.net.RemoteListener
This method sets the connector through which the events are sent to the local class.
setConvergenceCriterion(double) - Method in class repicea.math.optimizer.AbstractOptimizer
 
setConvergenceCriterion(double) - Method in class repicea.stats.model.AbstractStatisticalModel
This method sets the convergence criterion.
setCorrectlyTerminated(boolean) - Method in class repicea.app.AbstractGenericTask
This methods sets the correctlyTerminated member.
setCurrentFieldID(Object[], Enum<?>) - Method in class repicea.io.tools.REpiceaRecordReader
 
setCurrentLanguage(REpiceaTranslator.Language) - Static method in class repicea.util.REpiceaTranslator
This method sets the current language of the UIControlManager.
setCurrentZoom(int) - Method in class repicea.simulation.processsystem.SystemLayout
 
setDataType(byte) - Method in class repicea.io.javadbf.DBFField
Sets the data type of the field.
setDateYr(int) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
Sets the date of the measurement.
setDecimalCount(int) - Method in class repicea.io.javadbf.DBFField
Sets the decimal place size of the field.
setDecimalNb(int) - Method in class repicea.io.GExportFieldDetails
 
setDefaultRandomEffects(HierarchicalLevel, Estimate<? extends StandardGaussianDistribution>) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
setDefaultRandomEffects(HierarchicalLevel, Estimate<? extends StandardGaussianDistribution>) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
setDefaultRandomEffects(HierarchicalLevel, Estimate<? extends StandardGaussianDistribution>) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
setDefaultRandomEffects(HierarchicalLevel, Estimate<? extends StandardGaussianDistribution>) - Method in class repicea.simulation.REpiceaPredictor
 
setDefaultResidualError(Enum<?>, GaussianErrorTermEstimate) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
setDefaultResidualError(Enum<?>, GaussianErrorTermEstimate) - Method in class repicea.simulation.REpiceaPredictor
 
setDegradableOrganicCarbonFraction(double) - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
setDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject, Matrix) - Method in class repicea.simulation.REpiceaPredictor
 
setDisposable(boolean) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
setDisposableProportion(double) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
setDistanceFields(List<String>) - Method in class repicea.stats.data.GenericHierarchicalSpatialDataStructure
 
setDistanceFields(List<String>) - Method in interface repicea.stats.data.HierarchicalSpatialDataStructure
This method sets the distance field names.
setDocument(Document) - Method in class repicea.gui.components.NumberFormatFieldFactory.JFormattedNumericField
 
setDragMode(Enum) - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.LeftHandSideProcessorButton
 
setDragMode(Enum) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessorButton
 
setDragMode(Enum) - Method in class repicea.simulation.processsystem.ProcessorButton
 
setEditableVetos(int, boolean) - Method in class repicea.gui.components.REpiceaTableModel
By default, all the cells are editable.
setEffectList(Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
setEffectList(Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
setElements(List<Integer>, Matrix) - Method in class repicea.math.Matrix
This method replaces the elements of the matrix designated through the indices by the values in the row vector m.
setEnabled(boolean) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel
 
setEnabled(boolean) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
setEnabled(boolean) - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
setEnabled(boolean) - Method in class repicea.gui.components.REpiceaComboBoxOpenButton
 
setEnabled(boolean) - Method in class repicea.gui.components.REpiceaSlider
 
setEnabled(boolean) - Method in class repicea.gui.dnd.DragGestureMoveComponentHandler
This method enables or disables the handler.
setEncoding(TriggerSettings.Encoding) - Method in class repicea.console.TriggerSettings
 
setEstimatedParameterIndices() - Method in class repicea.simulation.ModelParameterEstimates
 
setEstimatedParameterIndices() - Method in class repicea.simulation.SASParameterEstimates
 
setFailureReason(Exception) - Method in class repicea.app.AbstractGenericTask
This method sets the failureReason member.
setFieldLength(int) - Method in class repicea.io.javadbf.DBFField
Length of the field.
setFieldList(List<P>) - Method in class repicea.io.FormatHeader
This method sets the list of fields
setFieldList(List<DBFField>) - Method in class repicea.io.javadbf.DBFHeader
 
setFieldMatch(FormatField) - Method in class repicea.io.tools.ImportFieldElement
This method sets the name and the match index of the ImportFieldElement instance.
setFieldName(String) - Method in class repicea.io.javadbf.DBFField
Deprecated.
This method is depricated as of version 0.3.3.1 and is replaced by DBFField.setName( String).
setFields(FormatHeader<FormatField>) - Method in class repicea.io.FormatWriter
This method sets the fields in the header.
setFields(List<FormatField>) - Method in class repicea.io.FormatWriter
This method sets the fields in the header.
setFields(List<FormatField>) - Method in class repicea.io.javacsv.CSVWriter
 
setFields(DBFField[]) - Method in class repicea.io.javadbf.DBFWriter
Deprecated.
Use the setFields(Vector fields) method instead
setFields(List<FormatField>) - Method in class repicea.io.javadbf.DBFWriter
 
setFields(List<FormatField>) - Method in class repicea.io.javasql.SQLWriter
 
setFilename(String) - Method in class repicea.gui.components.REpiceaMatchSelector
 
setFilename(String) - Method in class repicea.io.tools.ExportTool
Deprecated.
This method sets the filename of the output file.
setFilename(String) - Method in class repicea.io.tools.REpiceaExportTool
This method sets the filename of the output file.
setFilename(String) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
setFileSpecifications(String...) - Method in class repicea.io.tools.ImportFieldManager
This method sets the name of the DBF file and reads the fields of this file
setFinalCutHadToBeCarriedOut(boolean) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
setFont(UIControlManager.FontType, Font) - Static method in class repicea.gui.UIControlManager
This method makes it possible to change the fonts of the different controls.
setFormatHeader(H) - Method in class repicea.io.FormatReader
 
setFormatHeader(H) - Method in class repicea.io.FormatWriter
This method sets the header of the output file.
setGroup(DatasetGroup) - Method in class lerfob.carbonbalancetool.gui.AsymmetricalCategoryDataset
 
setHarvestVolumeMethod(Object) - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
setHeatProductionArray(double[]) - Method in class lerfob.carbonbalancetool.CATProductCompartment
 
setHelpMethod(Class<? extends Window>, AutomatedHelper) - Static method in class repicea.gui.UIControlManager
This method registers the help method for this Window-derived class.
setHierarchicalStructureLevel(List<String>) - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
setHierarchicalStructureLevel(List<String>) - Method in interface repicea.stats.data.HierarchicalStatisticalDataStructure
This method set the hierarchical structures of the data set.
setIcon() - Method in class repicea.gui.REpiceaDialog
This method sets the Icon of the frame.
setIcon() - Method in class repicea.gui.REpiceaFrame
This method sets the Icon of the frame.
setImportElementIndex() - Method in class repicea.io.tools.ImportFieldManager
This method sets the index of the fields.
setIndex(int) - Method in class repicea.io.FormatField
 
setIntegratedCarbon(double) - Method in class lerfob.carbonbalancetool.CATCompartment
 
setInterceptModel(boolean) - Method in class repicea.stats.data.GenericStatisticalDataStructure
 
setInterceptModel(boolean) - Method in interface repicea.stats.data.StatisticalDataStructure
This method determines whether the model has an intercept
setInternalSize(Point) - Method in class repicea.simulation.processsystem.SystemLayout
 
setJVMMemory(int) - Method in class repicea.multiprocess.JavaProcess
This method sets the maximum memory of the Java Virtual Machine that runs this process.
setLabel() - Method in class repicea.simulation.processsystem.ProcessorButton
 
setLabel() - Method in class repicea.simulation.processsystem.ProcessorLinkLine
 
setLanguage(REpiceaTranslator.Language) - Method in class repicea.console.TriggerSettings
 
setLanguageFromMain(String[], REpiceaTranslator.Language) - Static method in class repicea.lang.REpiceaSystem
This method scans the arguments given to the main method in order to set the language.
setLanguageFromMain(String[]) - Static method in class repicea.lang.REpiceaSystem
This method scans the arguments given to the main method in order to set the language.
setLCA(LifeCycleAnalysis) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
Deprecated.
setLength(int) - Method in class repicea.io.GExportFieldDetails
 
setLocation(Window, Point) - Static method in class repicea.gui.UIControlManager
This method sets the location of a particular window.
setLocation(int, int) - Method in class repicea.simulation.processsystem.ProcessorButton
 
setLocation(Point) - Method in class repicea.simulation.processsystem.ProcessorButton
 
setLogDispatcher(LogCategoryDispatcher) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
setLowerBound(double) - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method sets the lower bound of the numerical integration.
setLowerBoundValue(Matrix) - Method in interface repicea.stats.distributions.BoundedDistribution
This method sets the lower bound.
setLowerBoundValue(Matrix) - Method in class repicea.stats.distributions.TruncatedGaussianDistribution
 
setLowerBoundValue(Matrix) - Method in class repicea.stats.distributions.UniformDistribution
 
setLowerBoundValue(Matrix) - Method in class repicea.stats.estimates.TruncatedGaussianEstimate
 
setLowerBoundValue(Matrix) - Method in class repicea.stats.estimates.UniformEstimate
 
setManager(ProductionLineManager) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
setManager(WoodPieceDispatcher) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
setMarketName(String) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
setMarketName(String) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
setMaximum(int) - Method in class repicea.gui.components.REpiceaSlider
This method sets the maximum value of the slider.
setMean(Matrix) - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
 
setMean(Matrix) - Method in interface repicea.stats.CentralMomentsSettable
This method sets the mean vector of the random variable.
setMean(Matrix) - Method in class repicea.stats.distributions.GaussianDistribution
 
setMean(Matrix) - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
setMean(Matrix) - Method in class repicea.stats.distributions.UnknownDistribution
 
setMean(Matrix) - Method in class repicea.stats.estimates.GaussianEstimate
 
setMean(Matrix) - Method in class repicea.stats.estimates.SimpleEstimate
 
setMemorizerWorkerEnabled(boolean) - Method in class repicea.serial.REpiceaMemorizerHandler
 
setMenuBar() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
setMenuEnabled(boolean) - Method in class repicea.console.MainDialog
 
setMinimum(int) - Method in class repicea.gui.components.REpiceaSlider
This method sets the minimum value of the slider.
setModelDefinition(String) - Method in class repicea.stats.model.AbstractStatisticalModel
This method sets the model definition and computes the appropriate matrix from the data.
setModelDefinition(String) - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
setModelStochastic(boolean) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method sets the model to stochastic.
setMultipleSelection(boolean) - Method in class repicea.io.tools.REpiceaExportTool
This method makes it possible to enable or disable the multiple export.
setMultiplier(double) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATGaussianSensitivityAnalysisParameter
 
setMultiplier(double) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameter
 
setMultiplierModifier(FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies, int, int, double) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method makes it possible to induce a proportional price changes for a given period and a give species.
setMultiplierModifier(int, int, double) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor
This method makes it possible to induce a proportional price changes for a given period for all species.
setName(String) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method sets the name of the designer.
setName(String) - Method in class repicea.app.AbstractGenericTask
This method sets the name of the task.
setName(String) - Method in class repicea.io.FormatField
This method sets the name of the field.
setName(String) - Method in class repicea.io.javadbf.DBFField
 
setName(String) - Method in interface repicea.multiprocess.IndependentProcess
This method sets the name of this process.
setName(String) - Method in class repicea.simulation.processsystem.Processor
This method sets the name of the processor.
setName(String) - Method in class repicea.simulation.treelogger.LogCategory
This method sets the name of this tree log category.
setNumberOfMonteCarloRealizations(int) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method sets the number of Monte Carlo realizations for the sensitivity analysis.
setNumberOfRecords(int) - Method in class repicea.io.FormatHeader
 
setNumberOfRecords(int) - Method in class repicea.io.javacsv.CSVHeader
 
setNumberOfRecords(int) - Method in class repicea.io.javadbf.DBFHeader
 
setNumberOfRecords(int) - Method in class repicea.io.javasql.SQLHeader
 
setOpenModuleForVersionsLaterThan8Enabled(boolean) - Method in class repicea.multiprocess.JavaProcess
Open the internal loader for versions later than 8.
setOptimizer(Estimator) - Method in class repicea.stats.model.AbstractStatisticalModel
This method sets the optimizer for the model.
setOptimizerParameters(Object) - Method in class repicea.stats.model.AbstractStatisticalModel
This method sets the parameter for the optimizer.
setOption(JavaProcess.JVM_OPTION, String) - Method in class repicea.multiprocess.JavaProcess
This method sets the JVM options
setOriginalLocation(Point) - Method in class repicea.simulation.processsystem.Processor
 
setParameterDialogCanceled(boolean) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method makes it possible to specify whether or not the parameter initialization in GUI mode has been aborted.
setParameterEstimates(ModelParameterEstimates) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
setParameterEstimates(ModelParameterEstimates) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
setParameterEstimates(ModelParameterEstimates) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
setParameterEstimates(ModelParameterEstimates) - Method in class repicea.simulation.REpiceaPredictor
 
setParameterEstimates(E) - Method in class repicea.simulation.SensitivityAnalysisParameter
 
setParameters(Matrix) - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
setParameters(Matrix) - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
setParameters(Matrix) - Method in class repicea.stats.model.lm.LinearModel
 
setParameters(Matrix) - Method in interface repicea.stats.model.StatisticalModel
 
setParametersVariabilityEnabled(boolean) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisParameter
 
setParameterValue(int, double) - Method in class repicea.math.AbstractMathematicalFunction
This method sets the parameter value.
setParameterValue(int, double) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
setParameterValue(int, double) - Method in class repicea.stats.model.glm.copula.FGMCompositeLogLikelihood
 
setPartOfEndlessLoop(boolean) - Method in class repicea.simulation.processsystem.Processor
 
setPopupInGuiInterfaceEnabled(boolean) - Method in class repicea.io.tools.ImportFieldManager
 
setPopupMenu() - Method in class repicea.gui.components.REpiceaTabbedPane
 
setPopUpWindowEnabled(boolean) - Method in class repicea.io.tools.REpiceaRecordReader
This method serves to enable or disable the PopUp Windows in the Import dialog.
setPrimaryProcessor(ProductionLineProcessor) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
setProcessor(AbstractProductionLineProcessor) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
setProductionLines(Object) - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
setProductionLineToBeSentTo(String) - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineProcessor
Deprecated.
setProductionManager(String) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method sets the production lines for the next simulation in script mode.
setProductionManager() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
setProgress(int) - Method in class repicea.util.PropertyChangeEventGeneratingClass
This method sends a PropertyChangeEvent with property set to "progress" on the Event Dispatch Thread.
setProgressBarEnabled(boolean, Window) - Method in class repicea.simulation.treelogger.TreeLogger
This method enables a progress bar related to window owner.
SetProperRealizationTask(CarbonAccountingTool, int) - Constructor for class lerfob.carbonbalancetool.CATTask.SetProperRealizationTask
 
setProperty(String, String) - Method in class repicea.app.SettingMemory
This method set a particular property.
setProperty(String, double) - Method in class repicea.app.SettingMemory
This method set a particular property.
setProperty(String, boolean) - Method in class repicea.app.SettingMemory
This method set a particular property.
setProperty(String, int) - Method in class repicea.app.SettingMemory
This method set a particular property.
setProperty(WoodPiece.Property, Double) - Method in class repicea.simulation.treelogger.WoodPiece
This method sets a particular property for this wood piece.
setProportion(double) - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryToMarketMatch
Deprecated.
 
setRandomEffectsAccordingToHeightDeviate(Estimate<? extends StandardGaussianDistribution>, Estimate<? extends StandardGaussianDistribution>, Matrix) - Method in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
setRandomEffectStructure() - Method in class repicea.stats.data.GenericHierarchicalStatisticalDataStructure
 
setReadWritePermissionGranted(REpiceaGUIPermission) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
This method sets the GUI rights for changing the tree logger parameters.
setRealization(int) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
setRecordSet(GRecordSet) - Method in class repicea.io.tools.ExportTool.InternalSwingWorkerForRecordSet
Deprecated.
 
setRecordSet(Enum) - Method in class repicea.io.tools.ExportTool
Deprecated.
This method instantiates a InternalSwingWorkerForRecordSet-derived class, which handles the construction of the GRecordSet instance.
setReferent(Object) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
setReferentForBiomassParameters(Object) - Method in class lerfob.carbonbalancetool.CATSettings
 
setRelativeTo(String) - Method in class repicea.io.RelativePathFile
 
setRepresentativeConcentrationPathway(REpiceaClimateGenerator.RepresentativeConcentrationPathway) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
Sets the Representative Concentration Pathway rcp for the climate generator.
setResidualVariance(Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2014.FrenchHDRelationship2014InternalPredictor
 
setResidualVariance(Matrix) - Method in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018InternalPredictor
 
setRowIndex(List<String>) - Method in class repicea.stats.estimates.Estimate
This method makes it possible to set an optional row index.
setSaveFileEnabled(boolean) - Method in class lerfob.carbonbalancetool.io.CATExportTool
 
setSaveFileEnabled(boolean) - Method in class repicea.io.tools.REpiceaExportTool
This method makes it possible to disable the saving to file.
setSaveMemoryEnabled(boolean) - Method in class repicea.simulation.treelogger.TreeLogger
This method enables the save memory mode.
setSaveThread(Thread) - Method in class repicea.io.REpiceaRecordSet
This method specifies that the record set is linked to a save thread.
setSelected(boolean) - Method in class lerfob.carbonbalancetool.productionlines.LeftHandSideProcessor.LeftHandSideProcessorButton
 
setSelected(boolean) - Method in class repicea.simulation.processsystem.DnDCompatibleButton
 
setSelected(boolean) - Method in class repicea.simulation.processsystem.SelectableJButton
 
setSelectedGroupId(int) - Method in class repicea.io.tools.REpiceaRecordReader
This method sets the selected group.
setSelectedIndex(int) - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog.CustomJList
 
setSelectedOption(Enum) - Method in class repicea.io.tools.ExportTool
Deprecated.
setSelectedOptions(Set<Enum>) - Method in class repicea.io.tools.ExportTool
Deprecated.
This method sets the export options.
setSelectedOptions(List<Enum>) - Method in class repicea.io.tools.REpiceaExportTool
This method sets the export options.
setSelectedTreeLogger(TreeLoggerParameters<?>) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
setSettingMemory(SettingMemory) - Method in class repicea.app.AbstractGenericEngine
This method sets the settings of the application.
setSettings() - Method in class repicea.console.Trigger
 
setSimulationRunning(boolean) - Method in class lerfob.carbonbalancetool.CATFrame
 
setSimulationValid(boolean) - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
setSize(Dimension) - Method in class repicea.simulation.processsystem.SystemPanel.SystemInternalPanel
 
setSonAnchor(AnchorProvider) - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
setSpecies(String) - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
This method sets the species for the simulation
setSpecies(Object) - Method in class repicea.simulation.treelogger.LogCategory
 
setSpecificResiduals(Tree, GaussianErrorTerm) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
This method records a normalized residuals into the simulatedResidualError member which is located in the ModelBasedSimulator class.
setStand(AWSStand) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
setStandList(List<CATCompatibleStand>) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method sets the list of stands from which the carbon balance should be calculated.
setStandList() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
setStatusClass(TreeStatusProvider.StatusClass) - Method in interface repicea.simulation.covariateproviders.treelevel.TreeStatusProvider
This method sets the status of the tree.
setStochasticModeEnabled(boolean) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
This method makes it possible to enable the stochastic mode.
setStratumFieldEnum(Enum<?>) - Method in class repicea.io.tools.ImportFieldManager
 
setString(REpiceaTranslator.TextableEnum, String, String) - Static method in class repicea.util.REpiceaTranslator
This method sets the different strings for an element, i.e.
setStroke(Graphics2D) - Method in class lerfob.carbonbalancetool.productionlines.EndOfLifeLinkLine
 
setStroke(Graphics2D) - Method in class lerfob.carbonbalancetool.productionlines.PreEndOfLifeLinkLine
 
setStroke(Graphics2D) - Method in class repicea.simulation.processsystem.AbstractProcessorLinkLine
 
setStroke(Graphics2D) - Method in class repicea.simulation.processsystem.PreProcessorLinkLine
 
setStrokeAndColor(XYItemRenderer) - Method in class lerfob.carbonbalancetool.gui.XYSeriesWithIntegratedRenderer
 
setSubMatrix(double[][], int, int) - Method in class repicea.math.Matrix
This method replaces some elements of the matrix by those that are contained in an array of Double.
setSubMatrix(Matrix, int, int) - Method in class repicea.math.Matrix
This method replaces some elements of the matrix by those that are contained in matrix m.
setTabComponentAt(int, Component) - Method in class repicea.gui.components.REpiceaTabbedPane
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters.DefaultSpecies
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.CATFrame.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.CATSettings.AssessmentReport
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.CATUtility.BiomassParametersName
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.CATUtility.ProductionManagerName
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.io.CATExportTool.ExportOption
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.ColumnName
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeature.LifetimeMode
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions.CombustionProcess
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature.UseClass
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature.LandfillType
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog.MessageID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor.WoodyDebrisProcessorID
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
 
setText(String, String) - Method in enum lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher.MessageID
Deprecated.
 
setText(String, String) - Method in enum lerfob.predictor.FertilityClassEmulator.FertilityClass
 
setText(String, String) - Method in enum lerfob.predictor.hdrelationships.FrenchHeightPredictor.FrenchHeightPredictorVersion
 
setText(String, String) - Method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
 
setText(String, String) - Method in enum lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters.MessageID
 
setText(String, String) - Method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel.MessageID
 
setText(String, String) - Method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters.Grade
 
setText(String, String) - Method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBALoggableTree.Species
 
setText(String, String) - Method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters.Grade
 
setText(String, String) - Method in enum lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters.Grade
 
setText(String, String) - Method in enum lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters.Grade
 
setText(String, String) - Method in enum lerfob.treelogger.mathilde.MathildeTreeLoggerParameters.Grade
 
setText(String, String) - Method in enum repicea.console.MainDialog.MessageID
 
setText(String, String) - Method in enum repicea.gui.genericwindows.CancellableWarningMessage.MessageID
 
setText(String, String) - Method in enum repicea.gui.genericwindows.REpiceaLicenseWindow.ControlID
 
setText(String, String) - Method in enum repicea.gui.genericwindows.REpiceaTipDialog.MessageID
 
setText(String, String) - Method in enum repicea.gui.REpiceaLookAndFeelMenu.MessageID
 
setText(String, String) - Method in enum repicea.gui.UIControlManager.CommonControlID
 
setText(String, String) - Method in enum repicea.gui.UIControlManager.CommonMenuTitle
 
setText(String, String) - Method in enum repicea.gui.UIControlManager.InformationMessage
 
setText(String, String) - Method in enum repicea.gui.UIControlManager.InformationMessageTitle
 
setText(String, String) - Method in enum repicea.io.GFileFilter.FileType
 
setText(String, String) - Method in enum repicea.io.REpiceaIOFileHandlerUI.MessageID
 
setText(String, String) - Method in enum repicea.io.tools.ExportTool.FieldName
Deprecated.
 
setText(String, String) - Method in enum repicea.io.tools.ExportToolDialog.MessageID
Deprecated.
 
setText(String, String) - Method in enum repicea.io.tools.ImportFieldManagerDialog.MessageID
 
setText(String, String) - Method in enum repicea.io.tools.REpiceaExportTool.FieldName
 
setText(String, String) - Method in enum repicea.io.tools.REpiceaExportToolDialog.MessageID
 
setText(String, String) - Method in enum repicea.io.tools.REpiceaRecordReader.MessageID
 
setText(String, String) - Method in enum repicea.net.server.BasicClient.ExceptionType
 
setText(String, String) - Method in enum repicea.simulation.ApplicationScaleProvider.ApplicationScale
 
setText(String, String) - Method in enum repicea.simulation.climate.REpiceaClimateGenerator.RepresentativeConcentrationPathway
 
setText(String, String) - Method in enum repicea.simulation.climate.REpiceaClimateVariableMap.ClimateVariable
 
setText(String, String) - Method in enum repicea.simulation.covariateproviders.plotlevel.ManagementTypeProvider.ManagementType
 
setText(String, String) - Method in enum repicea.simulation.covariateproviders.treelevel.SpeciesTypeProvider.SpeciesType
 
setText(String, String) - Method in enum repicea.simulation.covariateproviders.treelevel.TreeStatusProvider.StatusClass
 
setText(String, String) - Method in enum repicea.simulation.disturbances.DisturbanceTypeProvider.DisturbanceType
 
setText(String, String) - Method in enum repicea.simulation.MonteCarloSettings.MonteCarloVarSource
 
setText(String, String) - Method in enum repicea.simulation.processsystem.ProcessorInternalDialog.MessageID
 
setText(String, String) - Method in enum repicea.simulation.processsystem.SystemManagerDialog.MessageID
 
setText(String, String) - Method in enum repicea.simulation.processsystem.UISetup.MessageID
 
setText(String, String) - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
setText(String, String) - Method in enum repicea.simulation.treelogger.LogCategoryPanel.MessageID
 
setText(String, String) - Method in enum repicea.simulation.treelogger.TreeLoggerParametersDialog.MessageID
 
setText(String, String) - Method in enum repicea.stats.Distribution.Type
 
setText(String, String) - Method in enum repicea.stats.estimates.MonteCarloEstimate.MessageID
 
setText(String, String) - Method in interface repicea.util.REpiceaTranslator.TextableEnum
This method sets the english and french text for the label, control or title.
setTimeTable(CATTimeTable) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
SettingMemory - Class in repicea.app
The class SettingMemory makes it possible to record properties in a Map object and to retrieve them afterwards.
SettingMemory() - Constructor for class repicea.app.SettingMemory
Constructor with default filename, which is java.io.tmpdir / settings.ser.
SettingMemory(String) - Constructor for class repicea.app.SettingMemory
Constructor with filename.
settings - Variable in class repicea.console.Trigger
 
settingsAction() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
settingsAction() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParametersDialog
 
settingsAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
setTitle(String) - Method in interface repicea.gui.REpiceaWindow
 
setTitle(Class<? extends Window>, String, String) - Static method in class repicea.gui.UIControlManager
This method registers a title for this Window-derived class.
setTitleAt(int, String) - Method in class repicea.gui.components.REpiceaTabbedPane
 
setToDefaultValue() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLineManager
Deprecated.
This method reinitializes the production line manager and fire an event to listeners for eventual updating.
setToolPanel() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
setToolPanel() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
setToolTipTextAt(int, String) - Method in class repicea.gui.components.REpiceaTabbedPane
 
setTopComponent() - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
setTopComponent() - Method in class repicea.simulation.processsystem.ProcessorInternalDialog
This panel contains the information that are always displayed.
setTotalHeatProduction(double) - Method in class lerfob.carbonbalancetool.CATProductCompartment
 
setTreatment(AWSTreatment) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
setTree(AWSTree) - Method in class lerfob.windstormdamagemodels.awsmodel.AWSModelCore
 
setTreeLogger(TreeLogger<?, ?>) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
This method sets the TreeLogger instance that this wrapper contains.
setTreeLoggerDescriptions(Vector<TreeLoggerDescription>) - Method in class lerfob.carbonbalancetool.CATSettings
This method sets the possible tree logger options.
setTreeLoggerParameters() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLogger
 
setTreeLoggerParameters() - Method in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
setTreeLoggerParameters() - Method in class lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLogger
 
setTreeLoggerParameters() - Method in class lerfob.treelogger.mathilde.MathildeTreeLogger
 
setTreeLoggerParameters(Parameter) - Method in class repicea.simulation.treelogger.TreeLogger
This method sets the parameters in script mode.
setTreeLoggerParameters() - Method in class repicea.simulation.treelogger.TreeLogger
This method is called in GUI mode.
setTriggerRecordSetAndSaveManually(boolean) - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
This method makes it possible to just save the filename and wait to trigger the createRecordSet and save methods manually.
setTriggerRecordSetAndSaveManually(boolean) - Method in class repicea.io.tools.REpiceaExportToolDialog
This method makes it possible to just save the filename and wait to trigger the createRecordSet and save methods manually.
setUpperBound(double) - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method sets the upper bound of the numerical integration.
setUpperBoundValue(Matrix) - Method in interface repicea.stats.distributions.BoundedDistribution
This method sets the lower bound.
setUpperBoundValue(Matrix) - Method in class repicea.stats.distributions.TruncatedGaussianDistribution
 
setUpperBoundValue(Matrix) - Method in class repicea.stats.distributions.UniformDistribution
 
setUpperBoundValue(Matrix) - Method in class repicea.stats.estimates.TruncatedGaussianEstimate
 
setUpperBoundValue(Matrix) - Method in class repicea.stats.estimates.UniformEstimate
 
setUseClass(EndUseWoodProductCarbonUnitFeature.UseClass) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
setUseMode(UseModeProvider.UseMode) - Method in interface repicea.simulation.UseModeProvider
This method makes it possible to set the use mode of the model.
setUserInterfacePanel(CarbonUnitFeaturePanel) - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
setUserValidated(boolean) - Method in class repicea.io.tools.ImportFieldManager
 
setValue() - Method in class repicea.gui.components.REpiceaCellEditor
 
setValue(int) - Method in class repicea.gui.components.REpiceaSlider
This method sets the value of the slider.
setValue(Object) - Method in class repicea.io.GExportFieldDetails
 
setValueAt(int, int, Object, DataSet.ActionType) - Method in class repicea.stats.data.DataSet
 
setValueAt(int, String, Object, DataSet.ActionType) - Method in class repicea.stats.data.DataSet
 
setValuesInLikelihoodFunction(int) - Method in class repicea.stats.model.CompositeLogLikelihood
 
setVariabilitySource(CATSensitivityAnalysisSettings.VariabilitySource, Distribution.Type, boolean) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method sets the different parameters of the sensitivity analysis at the level suggested by the IPCC.
setVariabilitySource(CATSensitivityAnalysisSettings.VariabilitySource, Distribution.Type, boolean, double) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method sets the different parameters of the sensitivity analysis
setVariabilitySource(CATSensitivityAnalysisSettings.VariabilitySource, Distribution.Type, boolean, double) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
This method sets the different parameters of the sensitivity analysis
setVariableValue(int, double) - Method in class repicea.math.AbstractMathematicalFunction
This method sets the variable value associated with this variable name.
setVariableValue(int, double) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
setVariance(Matrix) - Method in class repicea.simulation.stemtaper.AbstractStemTaperEstimate
 
setVariance(Matrix) - Method in interface repicea.stats.CentralMomentsSettable
This method sets the variance-covariance matrix of the random variable.
setVariance(Matrix) - Method in class repicea.stats.distributions.GaussianDistribution
 
setVariance(Matrix) - Method in class repicea.stats.distributions.StandardGaussianDistribution
 
setVariance(Matrix) - Method in class repicea.stats.distributions.UnknownDistribution
 
setVariance(Matrix) - Method in class repicea.stats.estimates.GaussianEstimate
 
setVariance(Matrix) - Method in class repicea.stats.estimates.SimpleEstimate
 
setVerbose(boolean) - Method in class repicea.math.optimizer.NewtonRaphsonOptimizer
This method enables the verbose, i.e.
setVerboseEnabled(boolean) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
This method enables messages all along the process chain.
setVerboseEnabled(boolean) - Method in class lerfob.carbonbalancetool.CATSettings
 
setVerboseEnabled(boolean) - Method in class repicea.math.optimizer.AbstractOptimizer
This method sets the verbose to true or false.
setViewPosition(Point) - Method in class repicea.gui.components.REpiceaScrollPane.REpiceaViewport
 
setViewPositionVetoEnabled(boolean) - Method in class repicea.gui.components.REpiceaScrollPane.REpiceaViewport
This method is used to disable the reset of the upper left corner during an action.
setVisible(boolean) - Method in class lerfob.carbonbalancetool.CATScenarioComparisonDialog
 
setVisible(boolean) - Method in class lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog
 
setVisible(boolean) - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
setVisible(boolean) - Method in class repicea.gui.REpiceaDialog
This method overrides the method of the super class JFrame.
setVisible(boolean) - Method in class repicea.gui.REpiceaFrame
This method overrides the method of the super class JFrame.
setVisible(boolean) - Method in interface repicea.gui.REpiceaWindow
 
setVolumeForThisSpecies(String, double) - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
This method sets the volume of the difference species that compose the plot.
setVolumeProportion(double) - Method in class lerfob.treelogger.basictreelogger.BasicLogCategory
 
setWeight(double) - Method in interface repicea.simulation.covariateproviders.plotlevel.PlotWeightProvider
This method sets the weight of the plot instance.
setWoodSupply(Object) - Method in class lerfob.carbonbalancetool.CATSettings
Deprecated.
setWorkspace(String) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
setWorkspace(String) - Method in interface repicea.io.Workspaceable
This method sets the workspace
setWorkspace(String) - Method in class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
setWorkSpaceChangeableInGUI(boolean) - Static method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
This method enables or disables the set workspace option in the UI of the designer.
setX(Matrix) - Method in class repicea.math.AbstractMathematicalFunction
This method sets the vector of explanatory variables.
setX(Matrix) - Method in class repicea.math.AbstractMathematicalFunctionWrapper
 
setX(int, int) - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
setX(Matrix) - Method in class repicea.stats.model.glm.copula.CopulaExpression
 
setX(Matrix) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
Deprecated.
setX(int, int) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.DistanceLinkFunctionCopulaExpression
 
setX(int, int) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
This method is not necessary for this copula since the parameter is constant
setX(int, int) - Method in class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
setXValuesFromListOfPoints(List<Double>) - Method in class repicea.stats.integral.NumericalIntegrationMethod
This method sets the upper and lower bounds from a list of Double instances.
setYVector(Matrix) - Method in class repicea.stats.model.IndividualLikelihood
 
setYVector(Matrix) - Method in class repicea.stats.model.IndividualLogLikelihood
 
setYVector(Matrix) - Method in interface repicea.stats.model.LikelihoodCompatible
This method sets the vector of observed values.
ShortFilename - Static variable in class lerfob.app.LERFOBJARSVNAppVersion
 
ShortFilename - Static variable in class repicea.app.REpiceaJARSVNAppVersion
 
shortLivedSlider - Variable in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
shouldBreakAfterGettingPieces - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogger
 
showErrorMessage(String, Component) - Static method in class repicea.gui.CommonGuiUtility
This method causes a JOptionPane.showErrorMessage to be sent on the Event Dispatch Thread.
showInformationMessage(String, Component) - Static method in class repicea.gui.CommonGuiUtility
This method causes a JOptionPane.showErrorMessage to be sent on the Event Dispatch Thread.
showInterface() - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModel
 
showPopMenu(Point) - Method in class repicea.gui.components.REpiceaTabbedPane
 
showProgressBar(SwingWorker, Enum, boolean) - Method in class repicea.io.tools.ExportToolDialog
Deprecated.
 
showProgressBar(Map<Enum, REpiceaExportTool.InternalSwingWorkerForRecordSet>, boolean) - Method in class repicea.io.tools.REpiceaExportToolDialog
 
showResult() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
showUI(Window) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
showUI(Window) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
showUI() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
showUI(Window) - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
showUI(Window) - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings
 
showUI() - Method in class repicea.console.Trigger
 
showUI(Window) - Method in class repicea.gui.components.REpiceaMatchSelector
 
showUI() - Method in interface repicea.gui.REpiceaShowableUI
This method shows the GUI interface of the class that implements this interface.
showUI(Window) - Method in interface repicea.gui.REpiceaShowableUIWithParent
This method shows the GUI interface of the class that implements this interface.
showUI(Window) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
showUI(Window) - Method in class repicea.io.tools.ImportFieldManager
 
showUI(Window) - Method in class repicea.io.tools.REpiceaExportTool
 
showUI() - Method in class repicea.net.server.gui.ServerInterfaceEngine
 
showUI(Window) - Method in class repicea.simulation.processsystem.ProcessorButton
 
showUI(Window) - Method in class repicea.simulation.processsystem.ProcessorLinkLine
 
showUI(Window) - Method in class repicea.simulation.processsystem.SystemManager
 
showUI(Window) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
showWarningMessage(String, Component) - Static method in class repicea.gui.CommonGuiUtility
This method causes a JOptionPane.showErrorMessage to be sent on the Event Dispatch Thread.
shutdown(int) - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
shutdown(int) - Method in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
shutdown(int) - Method in class repicea.app.AbstractGenericEngine
 
shutdown(int) - Method in class repicea.net.server.JavaLocalGatewayServer
 
shutdownOnClosedConnection - Variable in class repicea.net.server.JavaLocalGatewayServer
 
SimpleCopulaExpression(double, String) - Constructor for class repicea.stats.model.glm.copula.CopulaLibrary.SimpleCopulaExpression
 
SimpleEstimate - Class in repicea.stats.estimates
The Estimate class is the general class for all estimates.
SimpleEstimate() - Constructor for class repicea.stats.estimates.SimpleEstimate
Public constructor 1 for derived classes.
SimpleEstimate(Matrix, Matrix) - Constructor for class repicea.stats.estimates.SimpleEstimate
Public constructor 2 with mean and variance
SimpleLogisticCopulaExpression(double, String) - Constructor for class repicea.stats.model.glm.copula.CopulaLibrary.SimpleLogisticCopulaExpression
 
simpleSelectionButton - Variable in class repicea.simulation.processsystem.ToolPanel
 
simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject, Estimate<?>) - Method in class lerfob.predictor.mathilde.climate.formerversion.MathildeClimatePredictor
Deprecated.
 
simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject, Estimate<?>) - Method in class lerfob.predictor.mathilde.climate.MathildeClimatePredictor
 
simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject, Estimate<?>) - Method in class lerfob.predictor.mathilde.MathildeSubModule
 
simulateDeviatesForRandomEffectsOfThisSubject(MonteCarloSimulationCompliantObject, Estimate<?>) - Method in class repicea.simulation.REpiceaPredictor
This method simulates random deviates from an estimate and stores them in the simulatedRandomEffects member.
size() - Method in class repicea.math.FastArrayList
 
SizeBeforeSwitchingToLUDecompositionInDeterminantCalculation - Static variable in class repicea.math.Matrix
 
slider - Variable in class repicea.gui.components.REpiceaSlider
 
SLIDER_CHANGE - Static variable in class repicea.gui.components.REpiceaSlider
 
SlopeInclinationPercentProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that the stand or the plot instance can return its slope inclination in percentage.
socketWrapper - Variable in class repicea.net.server.ClientThread
 
SocketWrapper - Interface in repicea.net
This interface ensures that the wrapper can read and write and knows whether it is closed or not.
sortObservations(List<Integer>) - Method in class repicea.stats.data.DataSet
This method sorts the data according to the fields represented by the indices in fieldIndices parameter.
species - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018TreeImpl
 
species - Variable in class repicea.simulation.hdrelationships.HDRelationshipPredictor.RegressionElements
 
speciesAddAction() - Method in class lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParametersDialog
 
speciesAddAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
The basic implementation of this method assumes that the species are designated by String instance.
SpeciesAdded - Static variable in class repicea.simulation.treelogger.TreeLoggerAWTProperty
 
SpeciesCompositionProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures that a particular plot can provide its composition, that is whether it is broadleaved dominated, conifer dominated or mixed.
SpeciesCompositionProvider.SpeciesComposition - Enum in repicea.simulation.covariateproviders.plotlevel
 
speciesForSimulation - Variable in class lerfob.carbonbalancetool.pythonaccess.PythonAccessPoint
 
SpeciesIn2014 - Static variable in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
 
speciesList - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
SpeciesMonteCarloEstimateMap() - Constructor for class lerfob.carbonbalancetool.CATUtilityMaps.SpeciesMonteCarloEstimateMap
 
SpeciesNameProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree can provide its own species name.
SpeciesProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree can provide its own species name.
SpeciesRemoved - Static variable in class repicea.simulation.treelogger.TreeLoggerAWTProperty
 
SpeciesTypeProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures that the tree can return its species type, i.e.
SpeciesTypeProvider.SpeciesType - Enum in repicea.simulation.covariateproviders.treelevel
 
splashTimer - Variable in class repicea.gui.genericwindows.REpiceaSplashWindow
 
splitLine(String, String) - Static method in class repicea.util.ObjectUtility
This method splits a String into a list of string given a particular token and the possibility of having the \" character.
SprayedAgainstDefoliatorProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the plot instance can tell whether or not it is going to be sprayed against defoliator in the upcoming interval.
SpruceBudwormDefoliatedProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide information as whether or not it has just been defoliated during a spruce budworm outbreak.
SQLField - Class in repicea.io.javasql
 
SQLField(String, String, int) - Constructor for class repicea.io.javasql.SQLField
General constructor.
SQLHeader - Class in repicea.io.javasql
 
SQLHeader() - Constructor for class repicea.io.javasql.SQLHeader
 
SQLReader - Class in repicea.io.javasql
The SQLReader class makes it possible to read tables in Microsoft Access databases (*.mdb, *.accdb).
SQLReader(String, String) - Constructor for class repicea.io.javasql.SQLReader
General constructor.
SQLWriter - Class in repicea.io.javasql
The SQLWriter class is an extension of the FormatWriter class, which is designed to write tables in MS Access databases.
SQLWriter(File, String, boolean) - Constructor for class repicea.io.javasql.SQLWriter
Constructor
SquaredDbhCmProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its squared dbh.
SquaredLnDbhCmPlus1Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide the square of the natural log of its own dbh + 1.
squareSym() - Method in class repicea.math.Matrix
This method makes a square symmetric matrix from a vector.
StandardGaussianDistribution - Class in repicea.stats.distributions
 
StandardGaussianDistribution() - Constructor for class repicea.stats.distributions.StandardGaussianDistribution
This constructor creates a Gaussian function with mean mu and variance sigma2.
start() - Method in class repicea.net.server.ClientThread
 
startAction() - Method in class repicea.console.MainDialog
 
startApplication() - Method in class repicea.app.AbstractGenericEngine
This method starts the client application.
startEmbeddedApplication() - Method in class repicea.console.Trigger
 
startReceiverThread() - Method in class repicea.net.server.AbstractServer
This method starts the callReceiver thread that handles the call from the clients.
stateChanged(ChangeEvent) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature
 
stateChanged(ChangeEvent) - Method in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
stateChanged(ChangeEvent) - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature
 
stateChanged(ChangeEvent) - Method in class lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel
 
stateChanged(ChangeEvent) - Method in class repicea.console.MainDialog
 
stateChanged(ChangeEvent) - Method in class repicea.gui.components.REpiceaSlider
 
stateChanged(ChangeEvent) - Method in class repicea.gui.components.REpiceaSliderGroup
 
stateChanged(ChangeEvent) - Method in class repicea.simulation.processsystem.ProcessorLinkLineSlider
 
stateChanged(ChangeEvent) - Method in class repicea.simulation.processsystem.SystemPanel
 
StatementMaker - Class in repicea.io.javasql
 
StatementMaker(Connection) - Constructor for class repicea.io.javasql.StatementMaker
 
StatisticalDataException - Exception in repicea.stats.data
This class handles Exception instance that are specific to the data.
StatisticalDataException(String) - Constructor for exception repicea.stats.data.StatisticalDataException
 
StatisticalDataStructure - Interface in repicea.stats.data
This interface is the basic interface for any data structure.
StatisticalModel<P extends StatisticalDataStructure> - Interface in repicea.stats.model
This interface defines the services provided by a statistical model.
StatisticalUtility - Class in repicea.stats
This class contains static methods that are useful for statistical regressions.
StatisticalUtility() - Constructor for class repicea.stats.StatisticalUtility
 
StatisticalUtility.TypeMatrixR - Enum in repicea.stats
 
StemDensityHaProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand instance can provide its own stem density.
StemTaperCrossSection - Class in repicea.simulation.stemtaper
This class simply describe a cross section in tree.
StemTaperCrossSection(double, double) - Constructor for class repicea.simulation.stemtaper.StemTaperCrossSection
Constructor.
StemTaperSegment - Class in repicea.simulation.stemtaper
The StemTaperSegment class represents a segment in the tree.
StemTaperSegment(double, double, NumericalIntegrationMethod) - Constructor for class repicea.simulation.stemtaper.StemTaperSegment
Constructor 1.
StemTaperSegment(NumericalIntegrationMethod) - Constructor for class repicea.simulation.stemtaper.StemTaperSegment
Constructor 2.
StemTaperSegment(StemTaperCrossSection, StemTaperCrossSection, NumericalIntegrationMethod) - Constructor for class repicea.simulation.stemtaper.StemTaperSegment
Constructor 2.
StemTaperSegmentList - Class in repicea.simulation.stemtaper
 
StemTaperSegmentList() - Constructor for class repicea.simulation.stemtaper.StemTaperSegmentList
 
StochasticInformationProvider<Realization> - Interface in repicea.simulation.covariateproviders.plotlevel
The StochasticInformationProvider interface provides basic information about the simulation mode.
stochasticOptionCheckBox - Variable in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
stopAction() - Method in class repicea.console.MainDialog
 
storeResults() - Method in class lerfob.carbonbalancetool.CATCompartmentManager
 
stringProperties - Variable in class repicea.app.SettingMemory
 
StudentTDistribution - Class in repicea.stats.distributions
This class implements the standard Student's t distribution.
StudentTDistribution(Matrix, Matrix, int) - Constructor for class repicea.stats.distributions.StudentTDistribution
This constructor creates a Student't distribution with mean mu and variance sigma2.
StudentTDistribution(int) - Constructor for class repicea.stats.distributions.StudentTDistribution
Constructor for a standard Student's distribution, i.e.
subCategory - Variable in class lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategory
 
subModules - Variable in class lerfob.predictor.mathilde.diameterincrement.MathildeDiameterIncrementPredictor
 
subModules - Variable in class lerfob.predictor.mathilde.mortality.MathildeMortalityPredictor
 
subProcessors - Variable in class repicea.simulation.processsystem.Processor
 
SubSplitter - Static variable in class repicea.lang.codetranslator.REnvironment
 
substitutionTextField - Variable in class lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel
 
subtract(Matrix) - Method in class repicea.math.Matrix
This method subtracts matrix m from the current matrix.
subtract(Matrix, Matrix) - Static method in class repicea.math.MatrixUtility
This method subtracts a matrix from a reference matrix.
subtract(BootstrapHybridPointEstimate) - Method in class repicea.stats.estimates.BootstrapHybridPointEstimate
This method returns a MonteCarloEstimate instance that results from the subtraction of two MonteCarloEstimate instances with the same number of realizations.
subtract(MonteCarloEstimate) - Method in class repicea.stats.estimates.MonteCarloEstimate
This method returns a MonteCarloEstimate instance that results from the subtraction of two MonteCarloEstimate instances with the same number of realizations.
subtract(PointEstimate<?>) - Method in class repicea.stats.estimates.PointEstimate
 
subtract(PointEstimate<?>) - Method in class repicea.stats.estimates.PopulationMeanEstimate
 
subtract(PointEstimate<?>) - Method in class repicea.stats.estimates.PopulationTotalEstimate
 
summary - Variable in class lerfob.carbonbalancetool.CATCompartmentManager
 
swapAlongTheDiagonal(int, int) - Method in class repicea.math.Matrix
 
symSquare() - Method in class repicea.math.Matrix
This method returns a vector of the values corresponding to a symmetric matrix.
synchronize() - Method in class repicea.serial.REpiceaMemorizerHandler
 
SynchronizedListening - Interface in repicea.gui
 
synchronizeUIWithOwner() - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
synchronizeUIWithOwner() - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog
 
synchronizeUIWithOwner() - Method in class lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettingsDlg
 
synchronizeUIWithOwner() - Method in class lerfob.treelogger.basictreelogger.BasicTreeLoggerParametersDialog
 
synchronizeUIWithOwner() - Method in class repicea.gui.components.REpiceaMatchSelectorDialog
 
synchronizeUIWithOwner() - Method in interface repicea.gui.OwnedWindow
This method ensures that the values of the components are those of the owner.
synchronizeUIWithOwner() - Method in class repicea.simulation.processsystem.SystemManagerDialog
 
synchronizeUIWithOwner() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
SynchronizeWithOwner - Static variable in class repicea.gui.REpiceaAWTProperty
 
SystemInternalPanel() - Constructor for class repicea.simulation.processsystem.SystemPanel.SystemInternalPanel
 
SystemLabel - Class in repicea.simulation.processsystem
 
SystemLabel() - Constructor for class repicea.simulation.processsystem.SystemLabel
 
SystemLayout - Class in repicea.simulation.processsystem
This class specifies the layout of the SystemPanel class.
SystemLayout() - Constructor for class repicea.simulation.processsystem.SystemLayout
 
SystemManager - Class in repicea.simulation.processsystem
 
SystemManager(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.SystemManager
 
SystemManager() - Constructor for class repicea.simulation.processsystem.SystemManager
 
SystemManagerDialog - Class in repicea.simulation.processsystem
 
SystemManagerDialog(Window, SystemManager) - Constructor for class repicea.simulation.processsystem.SystemManagerDialog
 
SystemManagerDialog.MessageID - Enum in repicea.simulation.processsystem
 
systemPanel - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
SystemPanel - Class in repicea.simulation.processsystem
 
SystemPanel(SystemManager, SystemLayout) - Constructor for class repicea.simulation.processsystem.SystemPanel
 
SystemPanel.SystemInternalPanel - Class in repicea.simulation.processsystem
 

T

tableChanged(TableModelEvent) - Method in class repicea.gui.components.REpiceaMatchSelector
 
TabTitleComponent(String) - Constructor for class repicea.gui.components.REpiceaTabbedPane.TabTitleComponent
 
take() - Method in class repicea.io.REpiceaRecordSet
 
tasksDone - Variable in class repicea.app.AbstractGenericEngine
 
TCPSocketWrapper - Class in repicea.net
The TCPSocketWrapper class handles the output and input of a TCP/IP socket.
TCPSocketWrapper(Socket, boolean) - Constructor for class repicea.net.TCPSocketWrapper
General constructor.
terminateSaveThreadIfAny() - Method in class repicea.io.tools.REpiceaExportTool.InternalSwingWorkerForRecordSet
 
TestProcessUnit - Class in repicea.simulation.processsystem
 
textPadding(String, String, int) - Static method in class repicea.io.javadbf.Utils
 
textPadding(String, String, int, int) - Static method in class repicea.io.javadbf.Utils
 
textPadding(String, String, int, int, byte) - Static method in class repicea.io.javadbf.Utils
 
TimeSinceLastCutYrProvider - Interface in repicea.simulation.covariateproviders.plotlevel
 
toArray() - Method in class repicea.stats.data.Observation
Converts this observation to an array of Object instances
ToolButton - Class in repicea.simulation.processsystem
 
ToolButton(REpiceaGUIPermission) - Constructor for class repicea.simulation.processsystem.ToolButton
 
toolPanel - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
ToolPanel - Class in repicea.simulation.processsystem
 
ToolPanel(SystemPanel) - Constructor for class repicea.simulation.processsystem.ToolPanel
 
ToolPanel.CreateLinkButton - Class in repicea.simulation.processsystem
 
ToolPanel.CreateProcessorButton - Class in repicea.simulation.processsystem
 
ToolPanel.KeyEventHandler - Class in repicea.simulation.processsystem
 
ToolPanel.MoveProcessorButton - Class in repicea.simulation.processsystem
 
ToolTips - Static variable in class repicea.simulation.processsystem.UISetup
 
topex - Variable in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables.AWSDefaultValuesSet
 
toString() - Method in enum lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
 
toString() - Method in enum lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters.DefaultSpecies
 
toString() - Method in enum lerfob.carbonbalancetool.CATFrame.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.CATSettings.AssessmentReport
 
toString() - Method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
 
toString() - Method in class lerfob.carbonbalancetool.CATSimulationDifference
 
toString() - Method in enum lerfob.carbonbalancetool.CATUtility.BiomassParametersName
 
toString() - Method in enum lerfob.carbonbalancetool.CATUtility.ProductionManagerName
 
toString() - Method in class lerfob.carbonbalancetool.CATUtility.ProductionProcessorManagerWrapper
 
toString() - Method in enum lerfob.carbonbalancetool.io.CATExportTool.ExportOption
 
toString() - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.ColumnName
 
toString() - Method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.MessageID
 
toString() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnit
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeature.LifetimeMode
 
toString() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitFeature
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel.MessageID
 
toString() - Method in class lerfob.carbonbalancetool.productionlines.CarbonUnitList
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions.CombustionProcess
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature.UseClass
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature.LandfillType
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis.ReferenceLCA
Deprecated.
 
toString() - Method in class lerfob.carbonbalancetool.productionlines.ProductionLine
Deprecated.
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog.MessageID
 
toString() - Method in enum lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor.WoodyDebrisProcessorID
 
toString() - Method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
 
toString() - Method in class lerfob.carbonbalancetool.woodpiecedispatcher.LogCategoryDispatcher
Deprecated.
 
toString() - Method in enum lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher.MessageID
Deprecated.
 
toString() - Method in enum lerfob.predictor.FertilityClassEmulator.FertilityClass
 
toString() - Method in enum lerfob.predictor.hdrelationships.FrenchHeightPredictor.FrenchHeightPredictorVersion
 
toString() - Method in class lerfob.predictor.mathilde.climate.GeographicalCoordinatesGenerator.PlotCoordinates
 
toString() - Method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
 
toString() - Method in enum lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters.MessageID
 
toString() - Method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel.MessageID
 
toString() - Method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters.Grade
 
toString() - Method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBALoggableTree.Species
 
toString() - Method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters.Grade
 
toString() - Method in enum lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters.Grade
 
toString() - Method in enum lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters.Grade
 
toString() - Method in enum lerfob.treelogger.mathilde.MathildeTreeLoggerParameters.Grade
 
toString() - Method in class repicea.app.AbstractGenericTask
 
toString() - Method in enum repicea.console.MainDialog.MessageID
 
toString() - Method in enum repicea.console.TriggerSettings.Encoding
 
toString() - Method in enum repicea.gui.genericwindows.CancellableWarningMessage.MessageID
 
toString() - Method in enum repicea.gui.REpiceaLookAndFeelMenu.MessageID
 
toString() - Method in enum repicea.gui.UIControlManager.CommonControlID
 
toString() - Method in enum repicea.gui.UIControlManager.CommonMenuTitle
 
toString() - Method in enum repicea.gui.UIControlManager.InformationMessage
 
toString() - Method in enum repicea.gui.UIControlManager.InformationMessageTitle
 
toString() - Method in class repicea.io.FormatField
 
toString() - Method in enum repicea.io.GFileFilter.FileType
 
toString() - Method in class repicea.io.javadbf.DBFReader
 
toString() - Method in enum repicea.io.REpiceaIOFileHandlerUI.MessageID
 
toString() - Method in enum repicea.io.tools.ExportTool.FieldName
Deprecated.
 
toString() - Method in enum repicea.io.tools.ImportFieldManagerDialog.MessageID
 
toString() - Method in enum repicea.io.tools.REpiceaExportTool.FieldName
 
toString() - Method in enum repicea.io.tools.REpiceaRecordReader.MessageID
 
toString() - Method in class repicea.math.formula.MathFormula
 
toString() - Method in class repicea.math.Matrix
Returns a representation of the m_afData array.
toString() - Method in class repicea.math.optimizer.AbstractOptimizer
 
toString() - Method in enum repicea.net.server.BasicClient.ExceptionType
 
toString() - Method in class repicea.serial.xml.XmlList
 
toString() - Method in enum repicea.simulation.ApplicationScaleProvider.ApplicationScale
 
toString() - Method in enum repicea.simulation.climate.REpiceaClimateGenerator.RepresentativeConcentrationPathway
 
toString() - Method in enum repicea.simulation.climate.REpiceaClimateVariableMap.ClimateVariable
 
toString() - Method in enum repicea.simulation.covariateproviders.plotlevel.ManagementTypeProvider.ManagementType
 
toString() - Method in enum repicea.simulation.covariateproviders.treelevel.SpeciesTypeProvider.SpeciesType
 
toString() - Method in enum repicea.simulation.covariateproviders.treelevel.TreeStatusProvider.StatusClass
 
toString() - Method in enum repicea.simulation.disturbances.DisturbanceTypeProvider.DisturbanceType
 
toString() - Method in class repicea.simulation.HierarchicalLevel
 
toString() - Method in enum repicea.simulation.MonteCarloSettings.MonteCarloVarSource
 
toString() - Method in class repicea.simulation.processsystem.Processor
 
toString() - Method in class repicea.simulation.processsystem.ProcessorButton
 
toString() - Method in enum repicea.simulation.processsystem.ProcessorInternalDialog.MessageID
 
toString() - Method in enum repicea.simulation.processsystem.SystemManagerDialog.MessageID
 
toString() - Method in enum repicea.simulation.processsystem.UISetup.MessageID
 
toString() - Method in class repicea.simulation.REpiceaPredictorEvent.ModelBasedSimulatorEventProperty
 
toString() - Method in enum repicea.simulation.species.REpiceaSpecies.Species
 
toString() - Method in class repicea.simulation.treelogger.LogCategory
 
toString() - Method in enum repicea.simulation.treelogger.LogCategoryPanel.MessageID
 
toString() - Method in class repicea.simulation.treelogger.TreeLoggerDescription
 
toString() - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
toString() - Method in enum repicea.simulation.treelogger.TreeLoggerParametersDialog.MessageID
 
toString() - Method in class repicea.stats.data.DataBlock
 
toString() - Method in enum repicea.stats.Distribution.Type
 
toString() - Method in enum repicea.stats.estimates.MonteCarloEstimate.MessageID
 
toString() - Method in class repicea.stats.estimates.MonteCarloEstimate
 
toString() - Method in class repicea.stats.estimators.MaximumLikelihoodEstimator
 
toString() - Method in class repicea.stats.model.glm.copula.FGMCopulaGLModel
 
toString() - Method in class repicea.stats.model.glm.GeneralizedLinearModel
 
toString() - Method in class repicea.stats.model.glm.HosmerLemeshowTest
 
toString() - Method in enum repicea.util.REpiceaTranslator.Language
 
TotalVolumeM3Provider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree instance can provide its total volume.
translator - Variable in class repicea.net.server.JavaLocalGatewayServer
 
transpose() - Method in class repicea.math.Matrix
Creates a transposed matrix.
TrapezoidalRule - Class in repicea.stats.integral
The TrapezoidalRule class implements the trapezoidal rule integration method.
TrapezoidalRule(double) - Constructor for class repicea.stats.integral.TrapezoidalRule
Constructor.
TrapezoidalRule(List<Double>) - Constructor for class repicea.stats.integral.TrapezoidalRule
This constructor is set through a list of double instances that represents the point along the integral.
TREE - Static variable in class repicea.simulation.HierarchicalLevel
 
treeList - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
TreeLogger<Parameter extends TreeLoggerParameters<? extends LogCategory>,Tree extends LoggableTree> - Class in repicea.simulation.treelogger
The TreeLogger abstract class is the class from which a the tree loggers must inherit.
TreeLogger() - Constructor for class repicea.simulation.treelogger.TreeLogger
General construtor for all AbstractTreeLogger-derived classes.
treeLogger - Variable in class repicea.simulation.treelogger.TreeLoggerParameters
 
TreeLoggerAWTProperty - Class in repicea.simulation.treelogger
The TreeLoggerAWTProperty class contains the event that are thrown by the TreeLoggerParameterDialog class.
TreeLoggerAWTProperty(String) - Constructor for class repicea.simulation.treelogger.TreeLoggerAWTProperty
 
treeLoggerChanged(TreeLoggerEvent) - Method in interface repicea.simulation.treelogger.TreeLoggerChangeListener
This method handles an event generated by a TreeLoggerWrapper instance.
TreeLoggerChangeListener - Interface in repicea.simulation.treelogger
The TreeLoggerChangeListener interface should be implemented by instances that listen to a TreeLoggerWrapper instance.
TreeLoggerCompatibilityCheck - Class in repicea.simulation.treelogger
The TreeLoggerCompatibilityCheck class provides some parameters than can be included in the compatibility check of the tree loggers.
TreeLoggerCompatibilityCheck(Object) - Constructor for class repicea.simulation.treelogger.TreeLoggerCompatibilityCheck
 
TreeLoggerDescription - Class in repicea.simulation.treelogger
The TreeLoggerDescription class has an address for a TreeLogger instance.
TreeLoggerDescription(String) - Constructor for class repicea.simulation.treelogger.TreeLoggerDescription
Constructor.
TreeLoggerDescription(Class<? extends TreeLogger<?, ?>>) - Constructor for class repicea.simulation.treelogger.TreeLoggerDescription
Constructor 2.
TreeLoggerEvent - Class in repicea.simulation.treelogger
The TreeLoggerEvent class is a basic event that is sent every time the TreeLogger instance is changed in the TreeLoggerWrapper class.
TreeLoggerEvent(TreeLogger<?, ?>) - Constructor for class repicea.simulation.treelogger.TreeLoggerEvent
Protected constructor since it is generated only in this package.
TreeLoggerFileFilter - Static variable in class repicea.simulation.treelogger.TreeLoggerParameters
 
TreeLoggerInstanceCompatibilityException() - Constructor for exception lerfob.carbonbalancetool.productionlines.ProductionProcessorManager.TreeLoggerInstanceCompatibilityException
 
TreeLoggerManager - Class in repicea.simulation.treelogger
 
TreeLoggerParameters<LC extends LogCategory> - Class in repicea.simulation.treelogger
The TreeLoggerParameters contains the basic features for defining the parameters of a treelogger.
TreeLoggerParameters(Class<? extends TreeLogger<?, ?>>) - Constructor for class repicea.simulation.treelogger.TreeLoggerParameters
General constructor all the TreeLoggerParameters-derived classes.
TreeLoggerParameters.TreeLoggerParametersFileFilter - Class in repicea.simulation.treelogger
 
TreeLoggerParametersDialog<P extends LogCategory> - Class in repicea.simulation.treelogger
The TreeLoggerParametersDialog is the abstract dialog that enables the specification of the different log grades or log categories.
TreeLoggerParametersDialog(Window, TreeLoggerParameters<P>) - Constructor for class repicea.simulation.treelogger.TreeLoggerParametersDialog
Constructor.
TreeLoggerParametersDialog.CustomJList - Class in repicea.simulation.treelogger
 
TreeLoggerParametersDialog.MessageID - Enum in repicea.simulation.treelogger
This enum variable contains the different messages displayed by the TreeLoggerParametersDialog classes.
TreeLoggerParametersFileFilter() - Constructor for class repicea.simulation.treelogger.TreeLoggerParameters.TreeLoggerParametersFileFilter
 
TreeLoggerWrapper - Class in repicea.simulation.treelogger
Deprecated.
TreeLoggerWrapper() - Constructor for class repicea.simulation.treelogger.TreeLoggerWrapper
Deprecated.
 
TreeStatusCollectionsProvider - Interface in repicea.simulation.covariateproviders.plotlevel
This interface ensures the stand can provide collections of trees according to a particular tree status.
TreeStatusProvider - Interface in repicea.simulation.covariateproviders.treelevel
This interface ensures the tree can provide its status.
TreeStatusProvider.StatusClass - Enum in repicea.simulation.covariateproviders.treelevel
 
TreeWeightProvider - Interface in repicea.simulation.covariateproviders.treelevel
This method ensures the tree instance can provide the weight of the plot it is located in.
Trigger - Class in repicea.console
 
Trigger() - Constructor for class repicea.console.Trigger
 
triggerRecordSetAndSaveManually - Variable in class repicea.io.tools.ExportToolDialog
Deprecated.
 
triggerRecordSetAndSaveManually - Variable in class repicea.io.tools.REpiceaExportToolDialog
 
TriggerSettings - Class in repicea.console
 
TriggerSettings(Trigger) - Constructor for class repicea.console.TriggerSettings
 
TriggerSettings.Encoding - Enum in repicea.console
 
trimLeftSpaces(byte[]) - Static method in class repicea.io.javadbf.Utils
 
TruncatedGaussianDistribution - Class in repicea.stats.distributions
 
TruncatedGaussianDistribution() - Constructor for class repicea.stats.distributions.TruncatedGaussianDistribution
Constructor 1.
TruncatedGaussianDistribution(Matrix, Matrix) - Constructor for class repicea.stats.distributions.TruncatedGaussianDistribution
Constructor 2.
TruncatedGaussianDistribution.Bound - Class in repicea.stats.distributions
 
TruncatedGaussianEstimate - Class in repicea.stats.estimates
The TruncatedGaussianEstimate class allows to generate random deviates from a truncated Gaussian distribution.
TruncatedGaussianEstimate() - Constructor for class repicea.stats.estimates.TruncatedGaussianEstimate
Basic constructor with mu set to 0 and sigma2 set to 1.
TruncatedGaussianEstimate(Matrix, Matrix) - Constructor for class repicea.stats.estimates.TruncatedGaussianEstimate
Constructor 2 with user specified mu and sigma2.
TXT - Static variable in class repicea.io.GFileFilter
 

U

UDPSocketWrapper - Class in repicea.net
The UDPSocketWrapper class handles the output and input of a UDP socket.
UDPSocketWrapper(InetSocketAddress, boolean) - Constructor for class repicea.net.UDPSocketWrapper
Constructor for client.
UDPSocketWrapper(int, boolean) - Constructor for class repicea.net.UDPSocketWrapper
Constructor for the server socket.
UIControlManager - Class in repicea.gui
The UIControlManager class contains static methods that facilitate the design of the dialog.
UIControlManager.CommonControlID - Enum in repicea.gui
This enum variable provides the most common controls.
UIControlManager.CommonMenuTitle - Enum in repicea.gui
This enum variable provides the most common menu titles in the menu bar.
UIControlManager.FontType - Enum in repicea.gui
 
UIControlManager.InformationMessage - Enum in repicea.gui
This enum variable provides the most common information messages.
UIControlManager.InformationMessageTitle - Enum in repicea.gui
This enum variable provides the most common message titles.
UISetup - Class in repicea.simulation.processsystem
 
UISetup() - Constructor for class repicea.simulation.processsystem.UISetup
 
UISetup.BasicMode - Enum in repicea.simulation.processsystem
 
UISetup.MessageID - Enum in repicea.simulation.processsystem
 
UIToolKit - Class in repicea.gui
The UIToolKit class provides some static methods that are useful to interact with the User Interface.
UIToolKit.WindowTrackerListener - Interface in repicea.gui
 
undo - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
undoAction() - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
UndoClicked - Static variable in class repicea.gui.REpiceaAWTProperty
 
UniformDistribution - Class in repicea.stats.distributions
 
UniformDistribution(Matrix, Matrix) - Constructor for class repicea.stats.distributions.UniformDistribution
 
UniformEstimate - Class in repicea.stats.estimates
The UniformEstimate class relies on a uniform distribution.
UniformEstimate(Matrix, Matrix) - Constructor for class repicea.stats.estimates.UniformEstimate
 
UnknownDistribution - Class in repicea.stats.distributions
The UnknownDistribution class is a basic distribution for which the first two moments are known (and can be set) but the underlying distribution remains unknown.
UnknownDistribution() - Constructor for class repicea.stats.distributions.UnknownDistribution
 
unlockEngine() - Method in class lerfob.carbonbalancetool.CarbonAccountingTool
 
unlockEngine() - Method in class repicea.app.AbstractGenericEngine
This method unlock the engine if locked.
unmarshall(XmlList) - Method in class repicea.serial.xml.XmlUnmarshaller
 
unpackMemorizerPackage(MemorizerPackage) - Method in class lerfob.carbonbalancetool.AbstractDesigner
Deprecated.
 
unpackMemorizerPackage(MemorizerPackage) - Method in class lerfob.carbonbalancetool.biomassparameters.BiomassParameters
 
unpackMemorizerPackage(MemorizerPackage) - Method in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
 
unpackMemorizerPackage(MemorizerPackage) - Method in class repicea.app.SettingMemory
 
unpackMemorizerPackage(MemorizerPackage) - Method in class repicea.console.TriggerSettings
 
unpackMemorizerPackage(MemorizerPackage) - Method in class repicea.gui.components.REpiceaMatchSelector
 
unpackMemorizerPackage(MemorizerPackage) - Method in interface repicea.serial.Memorizable
This method unpacks the MemorizerPackage instance retrieved by the TemporaryMemorizer class.
unpackMemorizerPackage(MemorizerPackage) - Method in class repicea.simulation.processsystem.SystemManager
 
unpackMemorizerPackage(MemorizerPackage) - Method in class repicea.simulation.treelogger.TreeLoggerParameters
 
updated - Variable in class repicea.stats.distributions.GaussianErrorTermList
 
updateErrorTerm(Matrix) - Method in class repicea.stats.distributions.GaussianErrorTermList
 
updateGUIForLanguage() - Method in class repicea.console.MainDialog
 
updateProcessEmissions(AmountMap<CarbonUnit.Element>, double, double) - Static method in class lerfob.carbonbalancetool.productionlines.AbstractProcessor
 
UseClassSpeciesMonteCarloEstimateMap() - Constructor for class lerfob.carbonbalancetool.CATUtilityMaps.UseClassSpeciesMonteCarloEstimateMap
 
UseCorrectedYears - Static variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018ClimateGenerator
 
UseModeProvider - Interface in repicea.simulation
The UseModeProvider interface ensures a model can be run in different modes (GUI only, GUI assisted, or Script).
UseModeProvider.UseMode - Enum in repicea.simulation
 
utf8Encoding - Variable in class repicea.console.MainDialog
 
Utils - Class in repicea.io.javadbf
Miscelaneous functions required by the JavaDBF package.

V

validateParameter(double) - Method in class repicea.math.ParameterBound
 
validateRecord(Object[]) - Method in class repicea.io.FormatWriter
This method validates the record before adding it to the output file.
ValidProcessorLinkLine - Class in repicea.simulation.processsystem
 
ValidProcessorLinkLine(SystemPanel, AnchorProvider, AnchorProvider) - Constructor for class repicea.simulation.processsystem.ValidProcessorLinkLine
 
ValletTotalAboveGroundVolumeEquations - Class in lerfob.allometricrelationships
This method implements the models developed in Vallet et al.
ValletTotalAboveGroundVolumeEquations() - Constructor for class lerfob.allometricrelationships.ValletTotalAboveGroundVolumeEquations
 
value - Variable in class repicea.stats.distributions.GaussianErrorTerm
 
valueChanged(ListSelectionEvent) - Method in class repicea.io.tools.ExportTool
Deprecated.
 
valueChanged(ListSelectionEvent) - Method in class repicea.io.tools.REpiceaExportTool
 
valueChanged(ListSelectionEvent) - Method in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
valueOf(String) - Static method in enum lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CarbonAccountingTool.CATMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATBasicWoodDensityProvider.AverageBasicDensity
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATCarbonContentRatioProvider.AverageCarbonContent
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATCompartment.PoolCategory
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATDecayFunction.ParameterID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATDecayFunction.VariableID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters.DefaultSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATFrame.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATSettings.AssessmentReport
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATTask.Task
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATUtility.BiomassParametersName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.CATUtility.ProductionManagerName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATExportTool.ExportOption
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.CATGrowthSimulationFieldID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.CATGrowthSimulationFieldLevel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.ColumnName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.CATYieldTableFieldID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.CATYieldTableFieldLevel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnit.CarbonUnitStatus
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnit.Element
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeature.LifetimeMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions.CombustionProcess
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature.UseClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature.LandfillType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis.ReferenceLCA
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManager.EnhancedMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor.WoodyDebrisProcessorID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher.MessageID
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.fagacees.FagaceesSpeciesProvider.FgSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.FertilityClassEmulator.FertilityClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.hdrelationships.FrenchHeightPredictor.FrenchHeightPredictorVersion
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Tree.FrenchCommercialVolume2014TreeSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Tree.FrenchCommercialVolume2020TreeSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchRegionPriorTo2016
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchRegion2016Provider.FrenchRegion2016
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters.Grade
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBALoggableTree.Species
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters.Grade
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters.Grade
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters.Grade
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.treelogger.mathilde.MathildeTreeLoggerParameters.Grade
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSModelCore.RandomEffectID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSModelCore.SubModelID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSStand.StandVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSStandImpl.TestStandVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTreatment.TreatmentVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTree.AWSTreeSpecies
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTree.TreeVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl.TestTreeVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.console.MainDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.console.TriggerSettings.Encoding
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.components.NumberFormatFieldFactory.Range
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.components.NumberFormatFieldFactory.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.components.REpiceaSlider.Position
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.genericwindows.CancellableWarningMessage.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.genericwindows.REpiceaLicenseWindow.ControlID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.genericwindows.REpiceaTipDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.REpiceaLookAndFeelMenu.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.UIControlManager.CommonControlID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.UIControlManager.CommonMenuTitle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.UIControlManager.FontType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.UIControlManager.InformationMessage
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.gui.UIControlManager.InformationMessageTitle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.GFileFilter.FileType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.REpiceaIOFileHandlerUI.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.ExportTool.FieldName
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.ExportToolDialog.MessageID
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.ImportFieldElement.FieldType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.ImportFieldManagerDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.REpiceaExportTool.FieldName
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.REpiceaExportToolDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.io.tools.REpiceaRecordReader.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.math.optimizer.AbstractOptimizer.LineSearchMethod
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.multiprocess.IndependentProcess.StateValue
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.multiprocess.JavaProcess.JVM_OPTION
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.RemoteEventManager.InternalCall
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.server.AbstractServer.ServerReply
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.server.BasicClient.ClientRequest
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.server.BasicClient.ExceptionType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.server.ServerConfiguration.Protocol
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.net.server.ServerTask.ServerTaskID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.ApplicationScaleProvider.ApplicationScale
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.climate.REpiceaClimateGenerator.RepresentativeConcentrationPathway
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.climate.REpiceaClimateVariableMap.ClimateVariable
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.DrainageGroupProvider.DrainageGroup
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.LandOwnershipProvider.LandOwnership
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.LandUseProvider.LandUse
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.ManagementTypeProvider.ManagementType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.plotlevel.SpeciesCompositionProvider.SpeciesComposition
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.treelevel.SpeciesTypeProvider.SpeciesType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.covariateproviders.treelevel.TreeStatusProvider.StatusClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.disturbances.DisturbanceTypeProvider.DisturbanceType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.MonteCarloSettings.MonteCarloVarSource
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.processsystem.ProcessorInternalDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.processsystem.SystemManagerDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.processsystem.UISetup.BasicMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.processsystem.UISetup.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.REpiceaPredictor.ErrorTermGroup
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.species.REpiceaSpecies.Species
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.treelogger.LogCategoryPanel.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.treelogger.TreeLoggerParametersDialog.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.treelogger.WoodPiece.Property
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.simulation.UseModeProvider.UseMode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.data.DataSet.ActionType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.Distribution.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.estimates.Estimate.EstimatorType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.estimates.MonteCarloEstimate.MessageID
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.integral.GaussQuadrature.NumberOfPoints
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.model.glm.LinkFunction.Type
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.stats.StatisticalUtility.TypeMatrixR
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum repicea.util.REpiceaTranslator.Language
Returns the enum constant of this type with the specified name.
values() - Static method in enum lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CarbonAccountingTool.CATMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATBasicWoodDensityProvider.AverageBasicDensity
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATCarbonContentRatioProvider.AverageCarbonContent
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATCompartment.CompartmentInfo
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATCompartment.PoolCategory
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATDecayFunction.ParameterID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATDecayFunction.VariableID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.catdiameterbasedtreelogger.CATDiameterBasedTreeLoggerParameters.DefaultSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATFrame.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATSettings.AssessmentReport
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATSettings.CATSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATTask.Task
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATUtility.BiomassParametersName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.CATUtility.ProductionManagerName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATExportTool.ExportOption
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.CATGrowthSimulationFieldID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.CATGrowthSimulationFieldLevel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationRecordReader.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.CATGrowthSimulationSpeciesSelectorDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATGrowthSimulationSpeciesSelector.ColumnName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.CATYieldTableFieldID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.CATYieldTableFieldLevel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.io.CATYieldTableRecordReader.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnit.CarbonUnitStatus
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnit.Element
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeature.LifetimeMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.CarbonUnitFeaturePanel.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.combustion.CombustionEmissions.CombustionProcess
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeature.UseClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.EndUseWoodProductCarbonUnitFeaturePanel.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.EnhancedProcessorInternalDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeature.LandfillType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.LandfillCarbonUnitFeaturePanel.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.LifeCycleAnalysis.ReferenceLCA
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManager.EnhancedMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.ProductionProcessorManagerDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor.WoodyDebrisProcessorID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.sensitivityanalysis.CATSensitivityAnalysisSettings.VariabilitySource
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher.MessageID
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.fagacees.FagaceesSpeciesProvider.FgSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.FertilityClassEmulator.FertilityClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.hdrelationships.FrenchHDRelationshipTree.FrenchHdSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.hdrelationships.FrenchHeightPredictor.FrenchHeightPredictorVersion
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.mathilde.MathildeTreeSpeciesProvider.MathildeTreeSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPredictor.FrenchNFIThinnerSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.volume.frenchcommercialvolume2014.FrenchCommercialVolume2014Tree.FrenchCommercialVolume2014TreeSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.predictor.volume.frenchcommercialvolume2020.FrenchCommercialVolume2020Tree.FrenchCommercialVolume2020TreeSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchDepartment
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchDepartmentProvider.FrenchRegionPriorTo2016
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.simulation.covariateproviders.plotlevel.FrenchRegion2016Provider.FrenchRegion2016
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.basictreelogger.BasicTreeLoggerParameters.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLogCategoryPanel.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.diameterbasedtreelogger.DiameterBasedTreeLoggerParameters.Grade
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBALoggableTree.Species
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.douglasfirfcba.DouglasFCBATreeLoggerParameters.Grade
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.europeanbeech.EuropeanBeechBasicTreeLoggerParameters.Grade
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.maritimepine.MaritimePineBasicTreeLoggerParameters.Grade
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.treelogger.mathilde.MathildeTreeLoggerParameters.Grade
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSModelCore.RandomEffectID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSModelCore.SubModelID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSStand.StandVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSStandImpl.TestStandVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTreatment.TreatmentVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTree.AWSTreeSpecies
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTree.TreeVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum lerfob.windstormdamagemodels.awsmodel.AWSTreeImpl.TestTreeVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.console.MainDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.console.TriggerSettings.Encoding
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.components.NumberFormatFieldFactory.Range
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.components.NumberFormatFieldFactory.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.components.REpiceaSlider.Position
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.genericwindows.CancellableWarningMessage.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.genericwindows.REpiceaLicenseWindow.ControlID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.genericwindows.REpiceaTipDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.REpiceaLookAndFeelMenu.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.UIControlManager.CommonControlID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.UIControlManager.CommonMenuTitle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.UIControlManager.FontType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.UIControlManager.InformationMessage
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.gui.UIControlManager.InformationMessageTitle
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.GFileFilter.FileType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.REpiceaIOFileHandlerUI.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.ExportTool.FieldName
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.ExportToolDialog.MessageID
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.ImportFieldElement.FieldType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.ImportFieldManagerDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.REpiceaExportTool.FieldName
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.REpiceaExportToolDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.io.tools.REpiceaRecordReader.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.math.optimizer.AbstractOptimizer.LineSearchMethod
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.multiprocess.IndependentProcess.StateValue
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.multiprocess.JavaProcess.JVM_OPTION
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.RemoteEventManager.InternalCall
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.server.AbstractServer.ServerReply
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.server.BasicClient.ClientRequest
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.server.BasicClient.ExceptionType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.server.ServerConfiguration.Protocol
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.net.server.ServerTask.ServerTaskID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.ApplicationScaleProvider.ApplicationScale
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.climate.REpiceaClimateGenerator.RepresentativeConcentrationPathway
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.climate.REpiceaClimateVariableMap.ClimateVariable
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.plotlevel.DrainageGroupProvider.DrainageGroup
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.plotlevel.LandOwnershipProvider.LandOwnership
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.plotlevel.LandUseProvider.LandUse
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.plotlevel.ManagementTypeProvider.ManagementType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.plotlevel.SpeciesCompositionProvider.SpeciesComposition
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.treelevel.SpeciesTypeProvider.SpeciesType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.covariateproviders.treelevel.TreeStatusProvider.StatusClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.disturbances.DisturbanceTypeProvider.DisturbanceType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.MonteCarloSettings.MonteCarloVarSource
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.processsystem.ProcessorInternalDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.processsystem.SystemManagerDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.processsystem.UISetup.BasicMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.processsystem.UISetup.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.REpiceaPredictor.ErrorTermGroup
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.species.REpiceaSpecies.Species
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.treelogger.LogCategoryPanel.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.treelogger.TreeLoggerParametersDialog.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.treelogger.WoodPiece.Property
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.simulation.UseModeProvider.UseMode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.data.DataSet.ActionType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.Distribution.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.estimates.Estimate.EstimatorType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.estimates.MonteCarloEstimate.MessageID
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.integral.GaussQuadrature.NumberOfPoints
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.model.glm.LinkFunction.Type
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.stats.StatisticalUtility.TypeMatrixR
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum repicea.util.REpiceaTranslator.Language
Returns an array containing the constants of this enum type, in the order they are declared.
VariableValueException(String) - Constructor for exception repicea.io.tools.REpiceaRecordReader.VariableValueException
 
VarianceEstimate - Class in repicea.stats.estimates
The VarianceEstimate is a class of Estimate that suits the variance estimation.
VarianceEstimate(int, double) - Constructor for class repicea.stats.estimates.VarianceEstimate
Constructor with mean only.
vectorY - Variable in class repicea.stats.data.GenericStatisticalDataStructure
 
vectorZ - Variable in class repicea.simulation.hdrelationships.HDRelationshipPredictor.RegressionElements
 
verbose - Variable in class repicea.math.optimizer.NewtonRaphsonOptimizer
 
VERY_SMALL - Static variable in class lerfob.carbonbalancetool.productionlines.ProductionProcessorManager
The VERY_SMALL value serves as threshold when dealing with small quantities.
VERY_SMALL - Static variable in class repicea.simulation.stemtaper.StemTaperSegment
 
viewPositionVetoEnabled - Variable in class repicea.gui.components.REpiceaScrollPane.REpiceaViewport
 

W

waitForCloseCall() - Method in class repicea.net.RemoteEventManager
This method makes the main thread waits for the receiver and the sender threads to die.
waitingStandList - Variable in class lerfob.carbonbalancetool.CarbonAccountingTool
 
wasThereAnySiliviculturalTreatmentInTheLast5Years() - Method in interface lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlot
This method returns true if any silvicultural treatment was carried out in the plot during the last five years.
wasThereAnySiliviculturalTreatmentInTheLast5Years() - Method in class lerfob.predictor.thinners.frenchnfithinner2018.FrenchNFIThinnerPlotImpl
 
wasThisTreeInitiallyMeasured(Tree) - Method in class repicea.simulation.hdrelationships.HDRelationshipPredictor
 
wdpID - Variable in class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor
 
weights - Variable in class repicea.stats.integral.NumericalIntegrationMethod
 
whatShouldIDoWithThisObject(Object) - Method in class repicea.multiprocess.IndependentProcessIncomingCommunicationWorker
This method handles the received object.
whatShouldIDoWithThisObjectIJustReceived(Object) - Method in class repicea.net.RemoteEventManager
This method already handles object that are either RemoteEvent instance and List of RemoteListener instances.
wind50 - Variable in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables.AWSDefaultValuesSet
 
wind99 - Variable in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables.AWSDefaultValuesSet
 
WindowAcceptedConfirmed - Static variable in class repicea.gui.REpiceaAWTProperty
 
windowActivated(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowActivated(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
WindowCancelledConfirmed - Static variable in class repicea.gui.REpiceaAWTProperty
 
WindowCancelRequested - Static variable in class repicea.gui.REpiceaAWTProperty
 
windowClosed(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowClosed(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
windowClosing(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
Called when the window is closed using the right corner x.
windowClosing(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
windowDeactivated(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowDeactivated(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
windowDeiconified(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowDeiconified(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
WindowHelpRequested - Static variable in class repicea.gui.REpiceaAWTProperty
 
windowIconified(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowIconified(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
WindowOkRequested - Static variable in class repicea.gui.REpiceaAWTProperty
 
windowOpened(WindowEvent) - Method in class lerfob.windstormdamagemodels.awsmodel.AlbrechtWindStormModelUI
 
windowOpened(WindowEvent) - Method in class repicea.gui.genericwindows.REpiceaProgressBarDialog
 
windowSettings - Variable in class lerfob.carbonbalancetool.biomassparameters.BiomassParametersDialog
 
WindowSettings - Class in repicea.gui
The WindowSettings class handles the last loaded filename and so on for a more friendly use of the interface.
WindowSettings(String, Window) - Constructor for class repicea.gui.WindowSettings
 
windowSettings - Variable in class repicea.io.tools.ImportFieldManagerDialog
 
windowSettings - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
windowSettings - Variable in class repicea.simulation.treelogger.TreeLoggerParametersDialog
 
WoodPiece - Class in repicea.simulation.treelogger
A basic wood piece from a logger.
WoodPiece(LogCategory, int, LoggableTree, int, boolean, boolean) - Constructor for class repicea.simulation.treelogger.WoodPiece
Deprecated.
WoodPiece(LogCategory, LoggableTree, boolean, double) - Constructor for class repicea.simulation.treelogger.WoodPiece
Constructor #2.
WoodPiece.Property - Enum in repicea.simulation.treelogger
 
WoodPieceDispatcher - Class in lerfob.carbonbalancetool.woodpiecedispatcher
Deprecated.
WoodPieceDispatcher(TreeLoggerWrapper, ProductionLineManager) - Constructor for class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
General constructor.
WoodPieceDispatcher() - Constructor for class lerfob.carbonbalancetool.woodpiecedispatcher.WoodPieceDispatcher
Deprecated.
Empty contructor for deserialization.
WoodPieceDispatcher.MessageID - Enum in lerfob.carbonbalancetool.woodpiecedispatcher
Deprecated.
 
woodProductFeature - Variable in class lerfob.carbonbalancetool.productionlines.AbstractProductionLineProcessor
 
WoodyDebrisProcessor - Class in lerfob.carbonbalancetool.productionlines
 
WoodyDebrisProcessor(WoodyDebrisProcessor.WoodyDebrisProcessorID) - Constructor for class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor
 
WoodyDebrisProcessor.WoodyDebrisProcessorButton - Class in lerfob.carbonbalancetool.productionlines
The WoodyDebrisProcessorButton class is the GUI implementation for WoodyDebrisProcessor.
WoodyDebrisProcessor.WoodyDebrisProcessorID - Enum in lerfob.carbonbalancetool.productionlines
 
WoodyDebrisProcessorButton(SystemPanel, WoodyDebrisProcessor) - Constructor for class lerfob.carbonbalancetool.productionlines.WoodyDebrisProcessor.WoodyDebrisProcessorButton
Constructor.
workingDirectory - Variable in class repicea.console.Trigger
 
Workspaceable - Interface in repicea.io
This interface applies to classes that use a workspace.
wrapper - Variable in class repicea.simulation.treelogger.TreeLogger
Deprecated.
write(int) - Method in class repicea.app.Logger
 
write(DataOutput) - Method in class repicea.io.javadbf.DBFField
Writes the content of DBFField object into the stream as per DBF format specifications.
write(DataOutput) - Method in class repicea.io.javadbf.DBFHeader
This method writes the header in the data file denominated by the DataOutput instance.
write(OutputStream) - Method in class repicea.io.javadbf.DBFWriter
Writes the set data to the OutputStream.
write() - Method in class repicea.io.javadbf.DBFWriter
 
writeObject(Object) - Method in interface repicea.net.SocketWrapper
This method sends an object through the socket.
writeObject(Object) - Method in class repicea.net.TCPSocketWrapper
 
writeObject(Object) - Method in class repicea.net.UDPSocketWrapper
 
writeObject(Object) - Method in class repicea.serial.xml.XmlSerializer
This method writes an object to the xml file.

X

xCoord - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
XGap - Static variable in class repicea.simulation.processsystem.UISetup
 
XML - Static variable in class repicea.io.GFileFilter
 
XmlDeserializer - Class in repicea.serial.xml
The XMLDeserializer class handles the deserialisation from a XML file.
XmlDeserializer(String) - Constructor for class repicea.serial.xml.XmlDeserializer
Constructor.
XmlDeserializer(InputStream) - Constructor for class repicea.serial.xml.XmlDeserializer
Constructor.
XmlList - Class in repicea.serial.xml
The XmlList class is the basic serialization for any object.
XmlMarshaller - Class in repicea.serial.xml
The XmlMarshaller class handles the serialization of any object into XmlList and XmlEntry objects.
XmlMarshaller() - Constructor for class repicea.serial.xml.XmlMarshaller
 
XmlMarshallException - Exception in repicea.serial.xml
A XmlMarshallException is thrown whenever the marshalling or the unmarshalling fails.
XmlMarshallingUtilities - Class in repicea.serial.xml
The XmlMarshallingUtilities class provides static methods for marshalling and unmarshalling.
XmlMarshallingUtilities() - Constructor for class repicea.serial.xml.XmlMarshallingUtilities
 
XmlSerialCloner<P> - Class in repicea.serial.cloner
The XmlSerialCloner class relies on the repicea.serial.xml package for cloning objects.
XmlSerialCloner() - Constructor for class repicea.serial.cloner.XmlSerialCloner
 
XmlSerializer - Class in repicea.serial.xml
The XMLSerializer class handles the serialization process for any Object.
XmlSerializer(String) - Constructor for class repicea.serial.xml.XmlSerializer
Constructor.
XmlSerializerChangeMonitor - Class in repicea.serial.xml
The XmlSerializerChangeMonitor records all the changes in package and class names.
XmlSerializerChangeMonitor() - Constructor for class repicea.serial.xml.XmlSerializerChangeMonitor
 
XmlUnmarshaller - Class in repicea.serial.xml
The XmlUnmarshaller class handles the deserialization from XmlEntry and XmlList classes.
XmlUnmarshaller() - Constructor for class repicea.serial.xml.XmlUnmarshaller
 
XOrigin - Static variable in class repicea.simulation.processsystem.UISetup
 
xValues - Variable in class repicea.stats.integral.NumericalIntegrationMethod
 
XYSeriesWithIntegratedRenderer - Class in lerfob.carbonbalancetool.gui
 
XYSeriesWithIntegratedRenderer(XYSeriesCollection, String, CATCompartment.CompartmentInfo, boolean, double) - Constructor for class lerfob.carbonbalancetool.gui.XYSeriesWithIntegratedRenderer
 

Y

y - Variable in class repicea.stats.model.glm.GeneralizedLinearModel
 
yCoord - Variable in class lerfob.predictor.hdrelationships.frenchgeneralhdrelationship2018.FrenchHDRelationship2018PlotImpl
 
year - Variable in class lerfob.windstormdamagemodels.awsmodel.AWSReferenceTables.AWSDefaultValuesSet
 
YEAR - Static variable in class repicea.simulation.HierarchicalLevel
 
YGap - Static variable in class repicea.simulation.processsystem.UISetup
 
YOrigin - Static variable in class repicea.simulation.processsystem.UISetup
 

Z

zoomSlider - Variable in class repicea.simulation.processsystem.SystemManagerDialog
 
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