lerfob.predictor.mathilde.recruitment

Class MathildeRecruitDbhPredictor

java.lang.Object

repicea.simulation.SensitivityAnalysisParameter<ModelParameterEstimates>

repicea.simulation.REpiceaPredictor

lerfob.predictor.mathilde.recruitment.MathildeRecruitDbhPredictor

All Implemented Interfaces:

java.io.Serializable

public class MathildeRecruitDbhPredictor
extends REpiceaPredictor

This class predicts the dbh of the recruits in MATHILDE.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class repicea.simulation.REpiceaPredictor

REpiceaPredictor.CruiseLine, REpiceaPredictor.ErrorTermGroup, REpiceaPredictor.IntervalNestedInPlotDefinition

Field Summary

Fields

Modifier and Type	Field and Description
protected static double	Dispersion

Fields inherited from class repicea.simulation.REpiceaPredictor

DefaultZeroIndex, isRandomEffectsVariabilityEnabled, isResidualVariabilityEnabled, listeners, oXVector

Fields inherited from class repicea.simulation.SensitivityAnalysisParameter

isParametersVariabilityEnabled

Constructor Summary

Constructors

Modifier	Constructor and Description
	MathildeRecruitDbhPredictor(boolean isVariabilityEnabled) Constructor
protected	MathildeRecruitDbhPredictor(boolean isParametersVariabilityEnabled, boolean isResidualVariabilityEnabled)

Method Summary

Modifier and Type	Method and Description
protected void	init() This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.
protected double	predictFixedEffectOnly(Matrix beta, MathildeRecruitmentStand stand, MathildeTree tree)
double	predictRecruitDiameter(MathildeRecruitmentStand stand, MathildeTree tree) This method returns the dbh of the recruit in Mathilde model.
protected double	predictRecruitDiameterWithOffset(MathildeRecruitmentStand stand, MathildeTree tree)

Methods inherited from class repicea.simulation.REpiceaPredictor

addModelBasedSimulatorListener, doBlupsExistForThisSubject, doesThisSubjectHaveResidualErrorTerm, doRandomDeviatesExistForThisSubject, fireModelBasedSimulatorEvent, fireRandomEffectDeviateGeneratedEvent, getBlupsForThisSubject, getCruiseLineForThisSubject, getDefaultRandomEffects, getDefaultRandomEffects, getDefaultResidualError, getGaussianErrorTerms, getIntervalNestedInPlotDefinition, getParametersForThisRealization, getRandomEffectsForThisSubject, getResidualError, getResidualErrorForThisSubject, getSubjectPlusMonteCarloSpecificId, getSubjectPlusMonteCarloSpecificId, hasSubjectBeenTestedForBlups, recordSubjectTestedForBlups, removeModelBasedSimulatorListener, setBlupsForThisSubject, setDefaultRandomEffects, setDefaultResidualError, setDeviatesForRandomEffectsOfThisSubject, setParameterEstimates, simulateDeviatesForRandomEffectsOfThisSubject

Methods inherited from class repicea.simulation.SensitivityAnalysisParameter

getParameterEstimates

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

Dispersion

protected static double Dispersion

Constructor Detail

MathildeRecruitDbhPredictor

public MathildeRecruitDbhPredictor(boolean isVariabilityEnabled)

Constructor

Parameters:

isVariabilityEnabled - true to enable the stochastic variability.

MathildeRecruitDbhPredictor

protected MathildeRecruitDbhPredictor(boolean isParametersVariabilityEnabled,
                                      boolean isResidualVariabilityEnabled)

Method Detail

init

protected void init()

Description copied from class: REpiceaPredictor

This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.

Specified by:

init in class REpiceaPredictor

predictRecruitDiameter

public double predictRecruitDiameter(MathildeRecruitmentStand stand,
                                     MathildeTree tree)

This method returns the dbh of the recruit in Mathilde model.

Parameters:

stand - a MathildeRecruitmentStand instance

tree - a MathildeTree instance

Returns:

the dbh (cm)

predictRecruitDiameterWithOffset

protected double predictRecruitDiameterWithOffset(MathildeRecruitmentStand stand,
                                                  MathildeTree tree)

predictFixedEffectOnly

protected double predictFixedEffectOnly(Matrix beta,
                                        MathildeRecruitmentStand stand,
                                        MathildeTree tree)