lerfob.predictor.mathilde.thinning

Class MathildeTreeThinningPredictor

java.lang.Object

repicea.simulation.SensitivityAnalysisParameter<ModelParameterEstimates>

repicea.simulation.REpiceaPredictor

repicea.simulation.REpiceaBinaryEventPredictor<MathildeThinningStand,MathildeTree>

lerfob.predictor.mathilde.thinning.MathildeTreeThinningPredictor

All Implemented Interfaces:

java.io.Serializable

public final class MathildeTreeThinningPredictor
extends REpiceaBinaryEventPredictor<MathildeThinningStand,MathildeTree>

This class implements the tree level thinning submodel in Mathilde model.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class repicea.simulation.REpiceaPredictor

REpiceaPredictor.CruiseLine, REpiceaPredictor.ErrorTermGroup, REpiceaPredictor.IntervalNestedInPlotDefinition

Field Summary

Fields

Modifier and Type	Field and Description
protected GaussHermiteQuadrature	ghq
protected static boolean	isGaussianQuadratureEnabled

Fields inherited from class repicea.simulation.REpiceaPredictor

DefaultZeroIndex, isRandomEffectsVariabilityEnabled, isResidualVariabilityEnabled, listeners, oXVector

Fields inherited from class repicea.simulation.SensitivityAnalysisParameter

isParametersVariabilityEnabled

Constructor Summary

Constructors

Constructor and Description
MathildeTreeThinningPredictor(boolean isVariabilityEnabled) Constructor.

Method Summary

Modifier and Type	Method and Description
protected double	getFixedEffectOnlyPrediction(Matrix beta, MathildeThinningStand stand, MathildeTree tree)
protected lerfob.predictor.mathilde.thinning.MathildeThinningSubModule	getSubModule(int subModuleId)
protected void	init() This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.
double	predictEventProbability(MathildeThinningStand stand, MathildeTree tree, java.lang.Object... parms) This method returns the probability of event for a particular tree represented by the parameter "tree".

Methods inherited from class repicea.simulation.REpiceaBinaryEventPredictor

findFirstParameterOfThisClass, predictEvent

Methods inherited from class repicea.simulation.REpiceaPredictor

addModelBasedSimulatorListener, doBlupsExistForThisSubject, doesThisSubjectHaveResidualErrorTerm, doRandomDeviatesExistForThisSubject, fireModelBasedSimulatorEvent, fireRandomEffectDeviateGeneratedEvent, getBlupsForThisSubject, getCruiseLineForThisSubject, getDefaultRandomEffects, getDefaultRandomEffects, getDefaultResidualError, getGaussianErrorTerms, getIntervalNestedInPlotDefinition, getParametersForThisRealization, getRandomEffectsForThisSubject, getResidualError, getResidualErrorForThisSubject, getSubjectPlusMonteCarloSpecificId, getSubjectPlusMonteCarloSpecificId, hasSubjectBeenTestedForBlups, recordSubjectTestedForBlups, removeModelBasedSimulatorListener, setBlupsForThisSubject, setDefaultRandomEffects, setDefaultResidualError, setDeviatesForRandomEffectsOfThisSubject, setParameterEstimates, simulateDeviatesForRandomEffectsOfThisSubject

Methods inherited from class repicea.simulation.SensitivityAnalysisParameter

getParameterEstimates

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

isGaussianQuadratureEnabled

protected static boolean isGaussianQuadratureEnabled

ghq

protected GaussHermiteQuadrature ghq

Constructor Detail

MathildeTreeThinningPredictor

public MathildeTreeThinningPredictor(boolean isVariabilityEnabled)

Constructor.

Method Detail

init

protected void init()

Description copied from class: REpiceaPredictor

This method reads all the parameters in .csv files and stores the estimates into members defaultBeta, defaultResidualError, and defaultRandomEffects.

Specified by:

init in class REpiceaPredictor

getFixedEffectOnlyPrediction

protected double getFixedEffectOnlyPrediction(Matrix beta,
                                              MathildeThinningStand stand,
                                              MathildeTree tree)

predictEventProbability

public double predictEventProbability(MathildeThinningStand stand,
                                      MathildeTree tree,
                                      java.lang.Object... parms)

Description copied from class: REpiceaBinaryEventPredictor

This method returns the probability of event for a particular tree represented by the parameter "tree".

Specified by:

predictEventProbability in class REpiceaBinaryEventPredictor<MathildeThinningStand,MathildeTree>

Parameters:

stand - a S-derived instance

tree - a T-derived instance

parms - some additional parameters

Returns:

the event probability

getSubModule

protected final lerfob.predictor.mathilde.thinning.MathildeThinningSubModule getSubModule(int subModuleId)